Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8065596.1

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 483

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8065596.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

atgagttatccggactacaccgaaactgaatcgggtcttcagtataaggacttgcgagcaggagatggccccaaacccaaggttggggatacagtagtgattgattgggatggttataccattggatactacggtcgtatatttgaagctcgaaataaaacaaaaggtggttcatttgaggtattgattacttatgatctgtttactggggacttatttcggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

74

Amino Acids

8.4

Weight (kDa)

4.69

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	83, 84
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	68
BaeI	ACNNNNGTAYC	4 cut(s)	81, 114, 118, 151
BbsI	GAAGAC	1 cut(s)	29
BccI	CCATC	2 cut(s)	59, 104
BciVI	GTATCC	2 cut(s)	82, 119
BfuI	GTATCC	2 cut(s)	82, 119
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 84
Bse1I	ACTGG	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	83, 84
BseNI	ACTGG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	83, 84
BsnI	GGCC	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	94, 134
BstC8I	GCNNGC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	29
BsuI	GTATCC	2 cut(s)	82, 119
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	68
CviJI	RGCY	2 cut(s)	69, 149
CviKI_1	RGCY	2 cut(s)	69, 149
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaiI	YATR	4 cut(s)	45, 117, 140, 195
FokI	GGATG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	11
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	94, 134
Kpn2I	TCCGGA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	3 cut(s)	24, 45, 192
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	29
MnlI	CCTC	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	10
MspI	CCGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	68
SetI	ASST	4 cut(s)	84, 151, 169, 183
SgeI	CNNG	8 cut(s)	23, 45, 64, 68, 72, 91, 162, 219
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	94, 134
TaqI	TCGA	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.