Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

25332306 .. 25334757

Gene Structure 2452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTTCAATCTCAGCCATTGGATCCCCACACCGTCCTCTAACCTCATCTGCCGGAATCTCTCGAACCCCTGTTCGGCGCGGATCCCACTCTCTTCTTCCTCCGGAAGCCGAGAAAGTTCCTGATTCAGGCGCAGGCAGTGGAAGCGCCAATGTTGTCGATCGAAGAAAGATGCTGTTGTCATCGATTGGAGTGGTGGCTTCAGCTTTCTGTAATAAAGAAGCAGCCTTGGCATCTCAATTTGCAGACATGCCGGCACTTAGGGGGAAGGACTACGGAAAGTCGAAAATGAGTTATCCCGACTATACAGAAACTGAATCAGGTCTTCAGTATAAGGACTTGCGAGCTGGAAATGGCCCCAAGCCGAAGGTTGGGGATACAGTGGTGGTTGATTGGGATGGTTATACCATTGGATACTATGGTCGCATATTTGAAGCTCGAAATAAGACAAAAGGTGGTTCATTTGAGGGTGATGACAAGGCTTTTTTCAAATTCAGGGTAGGATCTCAAGAGGTGATACCAGCTTTTGAGGAAGCTATTACAGGCATGTCTATTGGTGGCGTTAGAAGGATTATAGTGCCTCCAGAATTGGGATATCCCGACAATGATTACAACAAGAGCGGCCCAAAACCTAATACCTTTTCGGGCCAACGAGCGTTGGATTTTGTGCTGGGGAACCAAGGTCTGATAGACAAGACTCTTCTGTTTGATATCGAGCTGATTAAGATCATACCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

247

Amino Acids

26.47

Weight (kDa)

8.82

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	121 - 189	4.9e-07	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	621
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	2 cut(s)	81, 621
AclWI	GGATC	5 cut(s)	18, 31, 78, 91, 511
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	2 cut(s)	186, 311
AfiI	CCNNNNNNNGG	4 cut(s)	75, 128, 371, 590
AgsI	TTSAA	3 cut(s)	9, 434, 490
AluBI	AGCT	6 cut(s)	206, 347, 437, 524, 536, 718
AluI	AGCT	6 cut(s)	206, 347, 437, 524, 536, 718
AlwI	GGATC	5 cut(s)	18, 31, 78, 91, 511
AlwNI	CAGNNNCTG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	3 cut(s)	355, 622, 646
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	3 cut(s)	81, 134, 149
AspS9I	GGNCC	3 cut(s)	356, 623, 646
AsuHPI	GGTGA	2 cut(s)	482, 526
BaeI	ACNNNNGTAYC	4 cut(s)	369, 402, 406, 439
BamHI	GGATCC	2 cut(s)	23, 83
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	392
BciVI	GTATCC	2 cut(s)	370, 407
BfoI	RGCGCY	1 cut(s)	150
BfuI	GTATCC	2 cut(s)	370, 407
BisI	GCNGC	2 cut(s)	225, 622
BlsI	GCNGC	2 cut(s)	226, 623
BmgT120I	GGNCC	3 cut(s)	356, 623, 646
BmiI	GGNNCC	4 cut(s)	25, 85, 358, 677
BmsI	GCATC	2 cut(s)	162, 242
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	725
BsaJI	CCNNGG	2 cut(s)	228, 679
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 128, 371, 590
Bse118I	RCCGGY	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	725
BseAI	TCCGGA	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	228, 679
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	725
BseLI	CCNNNNNNNGG	4 cut(s)	75, 128, 371, 590
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	357, 624, 648
BshVI	ATCGAT	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	54, 104, 254
BslI	CCNNNNNNNGG	4 cut(s)	75, 128, 371, 590
BsnI	GGCC	3 cut(s)	357, 624, 648
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	5 cut(s)	23, 83, 160, 503, 726
BspACI	CCGC	2 cut(s)	81, 621
BspANI	GGCC	3 cut(s)	357, 624, 648
BspCNI	CTCAG	1 cut(s)	26
BspDI	ATCGAT	1 cut(s)	185
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	4 cut(s)	25, 85, 358, 677
BspPI	GGATC	5 cut(s)	18, 31, 78, 91, 511
BsrBI	CCGCTC	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	228, 679
BssMI	GATC	5 cut(s)	23, 83, 160, 503, 726
BssT1I	CCWWGG	2 cut(s)	228, 679
Bst4CI	ACNGT	2 cut(s)	35, 382
Bst6I	CTCTTC	2 cut(s)	99, 705
BstC8I	GCNNGC	3 cut(s)	136, 255, 345
BstDEI	CTNAG	2 cut(s)	13, 260
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	3 cut(s)	81, 134, 149
BstKTI	GATC	5 cut(s)	26, 86, 163, 506, 729
BstMBI	GATC	5 cut(s)	23, 83, 160, 503, 726
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 230
BstNSI	RCATGY	2 cut(s)	253, 550
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	3 cut(s)	23, 83, 503
BstYI	RGATCY	3 cut(s)	23, 83, 503
Bsu15I	ATCGAT	1 cut(s)	185
BsuI	GTATCC	2 cut(s)	370, 407
BsuRI	GGCC	3 cut(s)	357, 624, 648
BsuTUI	ATCGAT	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	145, 387
Cac8I	GCNNGC	3 cut(s)	136, 255, 345
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	3 cut(s)	81, 134, 149
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	356, 623, 646
ClaI	ATCGAT	1 cut(s)	185
CviAII	CATG	2 cut(s)	250, 547
DdeI	CTNAG	2 cut(s)	13, 260
DpnI	GATC	5 cut(s)	25, 85, 162, 505, 728
DpnII	GATC	5 cut(s)	23, 83, 160, 503, 726
Eam1104I	CTCTTC	2 cut(s)	99, 705
EarI	CTCTTC	2 cut(s)	99, 705
Eco130I	CCWWGG	2 cut(s)	228, 679
Eco32I	GATATC	2 cut(s)	596, 712
Eco57I	CTGAAG	2 cut(s)	186, 311
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoRV	GATATC	2 cut(s)	596, 712
EcoT14I	CCWWGG	2 cut(s)	228, 679
ErhI	CCWWGG	2 cut(s)	228, 679
FaeI	CATG	2 cut(s)	253, 550
FaiI	YATR	9 cut(s)	251, 306, 333, 405, 420, 428, 548, 575, 731
FatI	CATG	2 cut(s)	249, 546
Fnu4HI	GCNGC	2 cut(s)	225, 622
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	225, 622
GlaI	GCGC	3 cut(s)	80, 133, 148
GluI	GCNGC	2 cut(s)	225, 622
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	357, 624, 648
HapII	CCGG	3 cut(s)	54, 104, 254
HhaI	GCGC	3 cut(s)	81, 134, 149
Hin1II	CATG	2 cut(s)	253, 550
Hin6I	GCGC	3 cut(s)	79, 132, 147
HinP1I	GCGC	3 cut(s)	79, 132, 147
HinfI	GANTC	4 cut(s)	57, 125, 317, 697
HpaII	CCGG	3 cut(s)	54, 104, 254
HphI	GGTGA	2 cut(s)	482, 526
Hpy188I	TCNGA	1 cut(s)	687
Hpy188III	TCNNGA	7 cut(s)	63, 104, 122, 299, 509, 584, 599
HpyAV	CCTTC	3 cut(s)	262, 361, 561
HpyCH4III	ACNGT	2 cut(s)	35, 382
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 230
HpyF3I	CTNAG	2 cut(s)	13, 260
Hsp92II	CATG	2 cut(s)	253, 550
HspAI	GCGC	3 cut(s)	79, 132, 147
Kpn2I	TCCGGA	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	23, 83, 160, 503, 726
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	162, 242
MalI	GATC	5 cut(s)	25, 85, 162, 505, 728
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	5 cut(s)	23, 83, 160, 503, 726
MboII	GAAGA	5 cut(s)	86, 89, 177, 317, 692
MflI	RGATCY	3 cut(s)	23, 83, 503
MluCI	AATT	3 cut(s)	239, 491, 587
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	7 cut(s)	48, 55, 111, 460, 505, 523, 591
MroI	TCCGGA	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	1 cut(s)	723
MspI	CCGG	3 cut(s)	54, 104, 254
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	144, 230
NaeI	GCCGGC	1 cut(s)	255
NdeII	GATC	5 cut(s)	23, 83, 160, 503, 726
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	253, 550
NlaIV	GGNNCC	4 cut(s)	25, 85, 358, 677
NmeAIII	GCCGAG	1 cut(s)	136
NspI	RCATGY	2 cut(s)	253, 550
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	57, 125, 317
PkrI	GCNGC	2 cut(s)	226, 623
Ple19I	CGATCG	1 cut(s)	163
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PspFI	CCCAGC	1 cut(s)	670
PspN4I	GGNNCC	4 cut(s)	25, 85, 358, 677
PspPI	GGNCC	3 cut(s)	356, 623, 646
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	3 cut(s)	23, 83, 503
PvuI	CGATCG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	2 cut(s)	225, 622
Sau3AI	GATC	5 cut(s)	23, 83, 160, 503, 726
Sau96I	GGNCC	3 cut(s)	356, 623, 646
SchI	GAGTC	1 cut(s)	691
SfaNI	GCATC	2 cut(s)	162, 242
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	3 cut(s)	239, 491, 587
SsiI	CCGC	2 cut(s)	81, 621
StyI	CCWWGG	2 cut(s)	228, 679
TaaI	ACNGT	2 cut(s)	35, 382
TaqI	TCGA	7 cut(s)	64, 159, 163, 185, 284, 439, 714
TasI	AATT	3 cut(s)	239, 491, 587
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	3 cut(s)	57, 125, 317
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	2 cut(s)	145, 387
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	145, 387
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	2 cut(s)	253, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.