Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

46383209 .. 46388283

Gene Structure 5075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG291700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTTCAATCTCAGCCATTGGATCTCCTCAGCGACCTCTAACCTCATCGGTCGGAAAATCTCGAACCCGTGTACGGCGCGGACCCAAATCTTTTCTTCCCCCGGAAGCCGAGAAATCTTCTGATTCAGGTTCAGGCGGCGGAAGCAATCTTATCGAGCGAAGAAAACTTGTGTTTTCATCCATCGGAACTGTAGCTGCGGCTTTCTGTAATGCTTTTAAGGATAAACTCGCCCTGGCATCTCAGTTTGCAGACATGCCAGCAATTAGAGGAAAGGACTACGGCAAGTCGAAGATGAGTTATCCGGACTACACCGAAACTGAATCGGGTCTTCAGTATAAGGACTTGCGAGCAGGAGATGGCCCCAAACCCAAGGTTGGGGATACAGTAGTGATTGATTGGGATGGTTATACCATTGGATACTATGGTCGTATATTTGAAGCTCGAAATAAAACAAAAGGTGGTTCATTTGAGGGTGATGACAAGGCTTTTTTCAAATTCAGAGTAGGATCTCAAGAGGTGATACCAGCTTTTGAGGAAGCTATTACAGGCATGTCTCTTGGTGGCGTTAGAAGGTGCTGCATCTTGTTTTTTTCTGTAGCTTACAGCTTTTGCTTATGGAATTTTCAAGCAGTTGGATTGAATGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

217

Amino Acids

23.54

Weight (kDa)

9.33

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	123 - 195	1.6e-07	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	4 cut(s)	81, 138, 141, 200
AclWI	GGATC	2 cut(s)	31, 517
AcsI	RAATTY	2 cut(s)	497, 622
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	75, 377, 378
AgsI	TTSAA	5 cut(s)	9, 440, 496, 629, 643
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	6 cut(s)	197, 443, 530, 542, 602, 609
AluI	AGCT	6 cut(s)	197, 443, 530, 542, 602, 609
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	31, 517
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	197, 579
ApoI	RAATTY	2 cut(s)	497, 622
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	83, 362
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	488, 532
AvaII	GGWCC	1 cut(s)	83
BaeI	ACNNNNGTAYC	4 cut(s)	375, 408, 412, 445
BbsI	GAAGAC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	184, 566
BccI	CCATC	3 cut(s)	191, 353, 398
BceAI	ACGGC	2 cut(s)	92, 298
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	2 cut(s)	376, 413
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	192, 597
BfuI	GTATCC	2 cut(s)	376, 413
BisI	GCNGC	4 cut(s)	139, 198, 201, 580
BlsI	GCNGC	4 cut(s)	140, 199, 202, 581
Bme1390I	CCNGG	2 cut(s)	104, 236
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	83, 362
BmiI	GGNNCC	2 cut(s)	85, 364
BmrFI	CCNGG	2 cut(s)	104, 236
BmsI	GCATC	2 cut(s)	248, 591
BpiI	GAAGAC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	102, 234, 372
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 377, 378
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	102, 234, 372
BseGI	GGATG	2 cut(s)	179, 409
BseLI	CCNNNNNNNGG	3 cut(s)	75, 377, 378
BseMII	CTCAG	3 cut(s)	27, 44, 257
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	184, 566
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	104, 305
BslI	CCNNNNNNNGG	3 cut(s)	75, 377, 378
BsmAI	GTCTC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	23, 509
BspACI	CCGC	4 cut(s)	81, 138, 141, 200
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	3 cut(s)	26, 43, 256
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	85, 364
BspPI	GGATC	2 cut(s)	31, 517
BssECI	CCNNGG	3 cut(s)	102, 234, 372
BssMI	GATC	2 cut(s)	23, 509
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	193, 388
BstC8I	GCNNGC	2 cut(s)	261, 351
BstDEI	CTNAG	3 cut(s)	13, 30, 243
BstF5I	GGATG	2 cut(s)	179, 409
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	26, 512
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	2 cut(s)	23, 509
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	259, 556
BstSCI	CCNGG	2 cut(s)	102, 234
BstSFI	CTRYAG	2 cut(s)	192, 597
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	184, 566
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	23, 509
BstYI	RGATCY	2 cut(s)	23, 509
BsuI	GTATCC	2 cut(s)	376, 413
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	179, 409
Cac8I	GCNNGC	2 cut(s)	261, 351
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	83, 362
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	256, 553
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	13, 30, 243
DpnI	GATC	2 cut(s)	25, 511
DpnII	GATC	2 cut(s)	23, 509
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	259, 556
FaiI	YATR	7 cut(s)	257, 339, 411, 426, 434, 554, 619
FatI	CATG	2 cut(s)	255, 552
Fnu4HI	GCNGC	4 cut(s)	139, 198, 201, 580
FokI	GGATG	2 cut(s)	166, 416
Fsp4HI	GCNGC	4 cut(s)	139, 198, 201, 580
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	139, 198, 201, 580
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	104, 305
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	259, 556
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	125, 323
HpaII	CCGG	2 cut(s)	104, 305
HphI	GGTGA	2 cut(s)	488, 532
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	4 cut(s)	56, 124, 188, 503
Hpy188III	TCNNGA	3 cut(s)	63, 305, 515
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	2 cut(s)	193, 388
HpyCH4V	TGCA	2 cut(s)	251, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	3 cut(s)	13, 30, 243
Hsp92II	CATG	2 cut(s)	259, 556
HspAI	GCGC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	23, 509
Lsp1109I	GCAGC	2 cut(s)	184, 566
LweI	GCATC	2 cut(s)	248, 591
MalI	GATC	2 cut(s)	25, 511
MboI	GATC	2 cut(s)	23, 509
MboII	GAAGA	5 cut(s)	89, 111, 174, 304, 323
MflI	RGATCY	2 cut(s)	23, 509
MluCI	AATT	3 cut(s)	264, 497, 622
MmeI	TCCRAC	2 cut(s)	34, 616
MnlI	CCTC	7 cut(s)	39, 48, 55, 263, 466, 511, 529
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	1 cut(s)	219
MspI	CCGG	2 cut(s)	104, 305
MspR9I	CCNGG	2 cut(s)	104, 236
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	23, 509
NlaIII	CATG	2 cut(s)	259, 556
NlaIV	GGNNCC	2 cut(s)	85, 364
NmeAIII	GCCGAG	1 cut(s)	136
NspI	RCATGY	2 cut(s)	259, 556
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	2 cut(s)	125, 323
PkrI	GCNGC	4 cut(s)	140, 199, 202, 581
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	85, 364
PspPI	GGNCC	2 cut(s)	83, 362
PsuI	RGATCY	2 cut(s)	23, 509
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	139, 198, 201, 580
Sau3AI	GATC	2 cut(s)	23, 509
Sau96I	GGNCC	2 cut(s)	83, 362
ScrFI	CCNGG	2 cut(s)	104, 236
SfaNI	GCATC	2 cut(s)	248, 591
SfcI	CTRYAG	2 cut(s)	192, 597
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	264, 497, 622
SsiI	CCGC	4 cut(s)	81, 138, 141, 200
StyD4I	CCNGG	2 cut(s)	102, 234
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	193, 388
TaqI	TCGA	4 cut(s)	64, 156, 290, 445
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	264, 497, 622
TauI	GCSGC	2 cut(s)	141, 203
TfiI	GAWTC	2 cut(s)	125, 323
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	2 cut(s)	197, 579
TspDTI	ATGAA	2 cut(s)	168, 456
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	497, 622
XceI	RCATGY	2 cut(s)	259, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.