Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Forward (+)

10924990 .. 10927523

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1141800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCTTCAATCTCAGCCGTCCGGTCTCCACCGCGGCCTCCGTCCTCACCCGTCGGAAAATCTTCAACCCCGATACGTCGTTTCGTGCTAAACTTCCCTTCTATGCGCCAGAGACGCCGCGGACCCCAATCTCATCTTCTTCCTGAAGCGGAGAAGTTTTCCGATTCAGGTGCAGGCGGTGGAAGCATTCTTATCGAGCGAAGAAGTGTTGTGTTTTCATCGGTTGGCATGGTGGCTGCAGCTTTCTGTAATGCTTCAAAGGACGTAATTGCCCTCGCGTCTCAGTTTACTGACATGCCAGCACTTAGGGGGAAGGACTATGGCAAGTCGAAAATGAGTTATCCGGACTATACGGAAACTGAATCAGGTCTTCAGTACAAGGACTTGCGAGTAGGAGATGGCCCCAAACCGAAGGTGGGAGAGACCGTTGTGGTTGATTGGGATGGATACACCATAGGATATTATGGACGTATCTTTGAAGCTCGAAATAAAACAAAGGGCGGTTCATTTGAGGGTGATGACAAGGCCTTTTTCAAATTCAGGGTAGGATCTCAAGAGGTAATACCAGCTTTTGAGGAATCCATTACAGGCATGGCTCTTGGAGGCATTAGAAGGATCATAGTGCCCCCGGAATTGGGATATCCAGACAATGACTACAACAAGAGTGGCCCAAGGCCGACAACATTTTCGGGCCAACGAGCCTTGGATTTCGTGCTGAGGAACCAAGGGCTGATCGACAAGACTCTTCTGTTCGATATTGAGCTCATCAAGATCATACCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

262

Amino Acids

28.64

Weight (kDa)

9.42

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	136 - 256	1.6e-14	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	34, 120, 278
AccIII	TCCGGA	1 cut(s)	343
AciI	CCGC	7 cut(s)	32, 34, 118, 120, 149, 177, 501
AclWI	GGATC	2 cut(s)	556, 623
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	2 cut(s)	165, 356
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	416, 634, 635
AgsI	TTSAA	5 cut(s)	9, 66, 258, 479, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	4 cut(s)	242, 482, 569, 763
AluI	AGCT	4 cut(s)	242, 482, 569, 763
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	4 cut(s)	30, 106, 285, 416
AlwI	GGATC	2 cut(s)	556, 623
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	6 cut(s)	35, 400, 525, 667, 674, 691
ApeKI	GCWGC	2 cut(s)	236, 239
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	670, 702
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	4 cut(s)	122, 401, 668, 691
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	39, 527
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	223, 251
BccI	CCATC	2 cut(s)	392, 437
BceAI	ACGGC	1 cut(s)	2
BcgI	CGANNNNNNTGC	4 cut(s)	152, 175, 186, 209
BciVI	GTATCC	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	4 cut(s)	30, 106, 285, 416
BfmI	CTRYAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	4 cut(s)	35, 118, 237, 240
BlsI	GCNGC	4 cut(s)	36, 119, 238, 241
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	4 cut(s)	122, 401, 668, 691
BmiI	GGNNCC	3 cut(s)	124, 403, 722
BmrFI	CCNGG	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	716
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	115
BsaI	GGTCTC	2 cut(s)	30, 416
BsaJI	CCNNGG	6 cut(s)	32, 118, 627, 671, 702, 724
BsaWI	WCCGGW	2 cut(s)	21, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 634, 635
BseAI	TCCGGA	1 cut(s)	343
BseDI	CCNNGG	6 cut(s)	32, 118, 627, 671, 702, 724
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	3 cut(s)	416, 634, 635
BseMII	CTCAG	3 cut(s)	27, 296, 707
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	2 cut(s)	223, 251
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	3 cut(s)	34, 120, 278
BshFI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	3 cut(s)	22, 344, 629
BslI	CCNNNNNNNGG	3 cut(s)	416, 634, 635
BsmAI	GTCTC	4 cut(s)	30, 106, 285, 416
BsmBI	CGTCTC	2 cut(s)	106, 285
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
Bso31I	GGTCTC	2 cut(s)	30, 416
Bsp1286I	GDGCHC	2 cut(s)	627, 765
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	548, 615, 732, 771
BspACI	CCGC	7 cut(s)	32, 34, 118, 120, 149, 177, 501
BspANI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
BspCNI	CTCAG	3 cut(s)	26, 295, 708
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	3 cut(s)	34, 120, 278
BspLI	GGNNCC	3 cut(s)	124, 403, 722
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	2 cut(s)	556, 623
BspTNI	GGTCTC	2 cut(s)	30, 416
BssECI	CCNNGG	6 cut(s)	32, 118, 627, 671, 702, 724
BssMI	GATC	4 cut(s)	548, 615, 732, 771
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	3 cut(s)	671, 702, 724
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	750
BstACI	GRCGYC	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	175, 300
BstDEI	CTNAG	4 cut(s)	13, 282, 305, 716
BstDSI	CCRYGG	2 cut(s)	32, 118
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	3 cut(s)	34, 120, 278
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	4 cut(s)	551, 618, 735, 774
BstMAI	GTCTC	4 cut(s)	30, 106, 285, 416
BstMBI	GATC	4 cut(s)	548, 615, 732, 771
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 183
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	3 cut(s)	34, 120, 278
BstV1I	GCAGC	2 cut(s)	223, 251
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
BtgI	CCRYGG	2 cut(s)	32, 118
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	175, 300
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	4 cut(s)	122, 401, 668, 691
Cfr42I	CCGCGG	2 cut(s)	35, 121
CseI	GACGC	2 cut(s)	123, 267
Csp6I	GTAC	1 cut(s)	376
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	3 cut(s)	229, 295, 592
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	4 cut(s)	13, 282, 305, 716
DpnI	GATC	4 cut(s)	550, 617, 734, 773
DpnII	GATC	4 cut(s)	548, 615, 732, 771
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	763
Eco130I	CCWWGG	3 cut(s)	671, 702, 724
Eco147I	AGGCCT	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	2 cut(s)	30, 416
Eco32I	GATATC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	763
Eco57I	CTGAAG	2 cut(s)	165, 356
EcoICRI	GAGCTC	1 cut(s)	763
EcoRV	GATATC	1 cut(s)	641
EcoT14I	CCWWGG	3 cut(s)	671, 702, 724
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	3 cut(s)	671, 702, 724
Esp3I	CGTCTC	2 cut(s)	106, 285
FaeI	CATG	3 cut(s)	232, 298, 595
FatI	CATG	3 cut(s)	228, 294, 591
Fnu4HI	GCNGC	4 cut(s)	35, 118, 237, 240
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	4 cut(s)	35, 118, 237, 240
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	4 cut(s)	35, 118, 237, 240
HaeIII	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
HapII	CCGG	3 cut(s)	22, 344, 629
HgaI	GACGC	2 cut(s)	123, 267
HhaI	GCGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	232, 298, 595
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	4 cut(s)	164, 362, 578, 742
HpaII	CCGG	3 cut(s)	22, 344, 629
HphI	GGTGA	2 cut(s)	39, 527
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	56, 163
Hpy188III	TCNNGA	5 cut(s)	143, 344, 554, 644, 769
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	56, 81
HpyAV	CCTTC	4 cut(s)	108, 307, 406, 606
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	3 cut(s)	76, 264, 469
HpyCH4V	TGCA	2 cut(s)	173, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 183
HpyF3I	CTNAG	4 cut(s)	13, 282, 305, 716
HpySE526I	ACGT	3 cut(s)	76, 264, 469
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	232, 298, 595
HspAI	GCGC	1 cut(s)	106
Kpn2I	TCCGGA	1 cut(s)	343
KspI	CCGCGG	2 cut(s)	35, 121
Kzo9I	GATC	4 cut(s)	548, 615, 732, 771
Lsp1109I	GCAGC	2 cut(s)	223, 251
MaeII	ACGT	3 cut(s)	76, 264, 469
MalI	GATC	4 cut(s)	550, 617, 734, 773
MboI	GATC	4 cut(s)	548, 615, 732, 771
MboII	GAAGA	6 cut(s)	54, 128, 131, 213, 362, 737
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	2 cut(s)	627, 765
MluCI	AATT	3 cut(s)	267, 536, 632
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	8 cut(s)	48, 55, 284, 505, 550, 568, 596, 711
MroI	TCCGGA	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	61
MspA1I	CMGCKG	2 cut(s)	34, 120
MspI	CCGG	3 cut(s)	22, 344, 629
MspR9I	CCNGG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	186
MvnI	CGCG	3 cut(s)	34, 120, 278
MwoI	GCNNNNNNNGC	2 cut(s)	114, 183
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	4 cut(s)	548, 615, 732, 771
NlaIII	CATG	3 cut(s)	232, 298, 595
NlaIV	GGNNCC	3 cut(s)	124, 403, 722
NspI	RCATGY	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	527
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	164, 362, 578
PkrI	GCNGC	4 cut(s)	36, 119, 238, 241
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Psp124BI	GAGCTC	1 cut(s)	765
PspN4I	GGNNCC	3 cut(s)	124, 403, 722
PspPI	GGNCC	4 cut(s)	122, 401, 668, 691
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	765
SacII	CCGCGG	2 cut(s)	35, 121
SatI	GCNGC	4 cut(s)	35, 118, 237, 240
Sau3AI	GATC	4 cut(s)	548, 615, 732, 771
Sau96I	GGNCC	4 cut(s)	122, 401, 668, 691
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	627, 765
SfcI	CTRYAG	1 cut(s)	237
Sfr303I	CCGCGG	2 cut(s)	35, 121
SgrBI	CCGCGG	2 cut(s)	35, 121
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	3 cut(s)	267, 536, 632
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	7 cut(s)	32, 34, 118, 120, 149, 177, 501
SstI	GAGCTC	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	3 cut(s)	671, 702, 724
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	3 cut(s)	79, 267, 472
TaqI	TCGA	5 cut(s)	195, 329, 484, 735, 753
TasI	AATT	3 cut(s)	267, 536, 632
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	2 cut(s)	37, 120
TfiI	GAWTC	3 cut(s)	164, 362, 578
TseI	GCWGC	2 cut(s)	236, 239
TspDTI	ATGAA	2 cut(s)	207, 495
TspGWI	ACGGA	2 cut(s)	30, 368
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	412, 589
XmnI	GAANNNNTTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.