Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

39313851 .. 39315317

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0228700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGATTCGAAATCAAAACGTCCAGAAGGAGCTGAAGATAGGATCAGCCAATTACAGGACGATATTCTTGTGCATATACTATCCTATATTCCGACGGTCTATTCTGTTCGAACCATGGTTTTGTCTAAAAGATGGAACAACTTATGGACCTTCGTCCCCAGCCTACACTTCGACCAACTAGATAATCGCATAGGACATTATCGAACTTGGTATACTTTTGATGATTTTGCGAAGTTTGTTGATGGTGCACTCTCGTTACACAACTCGTCGACAATCAGAAAGTTTCGTCTTCATATTGAACGCAACATTCAGCTTATTCGAGAGGAAGGTGTTTCTCGCATTCGTGACTGGATATGCACTGCCATGAGGCATGAGGTCTGTGAACTTGATCTTTATTTTTGCCCTAATTATTGGTGGAGAGAGAAGATAGAGTTGAATCTGCCTCGAAGAGTTTTCTTGTGCAAAACTCTGGAGGTTTTGAAGGTACATTCAAATTGTATCAACTATCCTCCTACTAATCCAGGTTACTTTCCAAGCCTCAAGTTCGCCAAAGTTACCGCAGAACATGGAGATAATTCCTCAATGGGAGAACTTTTTTGTAACTGCCCTGTACTTGAAGAGTTGTCTATCGATGCCCATCTTATGAAAAAAGATGTCAACATCTGGATCTCTGCACCTGAATTGAAAACTTTAAGGACTAGAATTCTTGTAAATGATGATGAACGAAAGGTGAAAGGGATTTCTATCAATGCTCCAAAGCTTGAAAACCTTTTTGTCTACACTGATTTGACAAGATATATCTTGCGGAATGCAAAATCCCTCGTCAAAGCCAACATAGAACTCACAGATTTCGAAGAAAATTTGAGTCCAGAGCTTTTGAACCGTGCAACTGCTTTACTTGCAGGAGTTTCCGGTGTTGAATATTTGCATATATCAGGTCCTAATTATGTGGCATGTTCACTGCCTAATTTCTGTAATTTGAAGCAATTGAAGCTCATTCTTTTTGGGTGCTCTTATTTGGAATATGTAATGGAGTTGCTCAAGCGATCACCTAAGCTTGAAGATCTTGTCTTAGATATTGATGTCCGCTCATGGTATCGTGAAGAATATGTCGAAGGATACGAGCCCTTCAAGCCACCAGAGATTGTGCCTATTTGTGTGGTGTCCCACCTTAAGACTGTTTCCATTACTCACATCACGGGACATGATGATCAGTTAGGTGTGGTAAAGTATTTGTTAAAGTATGGTCAAGTTCTGAGGAATATGACTATATTCACCTGTGGTGCTCTTCTTTTTAAGACTCGTCATATCACAGAAGAGAAGTTCCAGAGGAAAATTTTGAAGTATCACAAGAGTTCAAACACTTGTGAGGTTGAAGTTAAGTTTGAAAATAAAGGGGTAGTTTCAAAATATTGTTTCCCCTGTGGAAGCAGCAACCTCCACCTAGATCAAAGATATCGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

488

Amino Acids

56.88

Weight (kDa)

8.48

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 53	8.2e-07	F-box domain
LRR_At5g56370	PF24758	115 - 264	1.6e-09	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	380 - 424	8.7e-10	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1089
AccI	GTMKAC	3 cut(s)	212, 269, 777
AciI	CCGC	3 cut(s)	558, 805, 1087
AclWI	GGATC	2 cut(s)	50, 674
AcsI	RAATTY	3 cut(s)	702, 859, 1335
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	486, 612
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflII	CTTAAG	1 cut(s)	1172
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	6 cut(s)	32, 313, 760, 874, 994, 1057
AluI	AGCT	6 cut(s)	32, 313, 760, 874, 994, 1057
Alw21I	GWGCWC	3 cut(s)	250, 1013, 1288
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	50, 674
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	1431
ApoI	RAATTY	3 cut(s)	702, 859, 1335
AspS9I	GGNCC	2 cut(s)	147, 938
AsuHPI	GGTGA	3 cut(s)	742, 1041, 1267
AsuII	TTCGAA	3 cut(s)	8, 109, 852
AvaII	GGWCC	2 cut(s)	147, 938
BaeGI	GKGCMC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	1128
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	3 cut(s)	250, 1013, 1288
BbvI	GCAGC	1 cut(s)	1443
BccI	CCATC	3 cut(s)	126, 236, 645
BciT130I	CCWGG	1 cut(s)	522
BciVI	GTATCC	1 cut(s)	1112
BclI	TGATCA	1 cut(s)	1210
BfaI	CTAG	3 cut(s)	179, 699, 1445
BfrI	CTTAAG	1 cut(s)	1172
BfuI	GTATCC	1 cut(s)	1112
BglII	AGATCT	1 cut(s)	1063
BisI	GCNGC	1 cut(s)	1432
BlsI	GCNGC	1 cut(s)	1433
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	2 cut(s)	147, 938
BmgT120I	GGNCC	2 cut(s)	147, 938
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	622
BoxI	GACNNNNGTC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	1053
Bpu14I	TTCGAA	3 cut(s)	8, 109, 852
BpuEI	CTTGAG	2 cut(s)	524, 1025
Bsa29I	ATCGAT	1 cut(s)	630
BsaBI	GATNNNNATC	2 cut(s)	636, 743
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	911
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	2 cut(s)	636, 743
BseBI	CCWGG	1 cut(s)	522
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	114
BseJI	GATNNNNATC	2 cut(s)	636, 743
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	1247
BseNI	ACTGG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	1443
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	657
BshVI	ATCGAT	1 cut(s)	630
BsiHKAI	GWGCWC	3 cut(s)	250, 1013, 1288
BsiSI	CCGG	1 cut(s)	912
BslFI	GGGAC	3 cut(s)	140, 1150, 1215
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	3 cut(s)	140, 1150, 1215
BsmI	GAATGC	2 cut(s)	339, 814
Bsp119I	TTCGAA	3 cut(s)	8, 109, 852
Bsp1286I	GDGCHC	4 cut(s)	250, 1013, 1128, 1288
Bsp143I	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	3 cut(s)	558, 805, 1087
BspCNI	CTCAG	1 cut(s)	1248
BspDI	ATCGAT	1 cut(s)	630
BspPI	GGATC	2 cut(s)	50, 674
BspQI	GCTCTTC	1 cut(s)	1293
BspT104I	TTCGAA	3 cut(s)	8, 109, 852
BspTI	CTTAAG	1 cut(s)	1172
BsrBI	CCGCTC	1 cut(s)	1089
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
BssNAI	GTATAC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	97, 884, 1180
Bst6I	CTCTTC	4 cut(s)	442, 612, 1293, 1311
BstAFI	CTTAAG	1 cut(s)	1172
BstBI	TTCGAA	3 cut(s)	8, 109, 852
BstDEI	CTNAG	3 cut(s)	1053, 1072, 1256
BstDSI	CCRYGG	1 cut(s)	114
BstKTI	GATC	7 cut(s)	45, 391, 669, 1049, 1066, 1213, 1450
BstMBI	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
BstMWI	GCNNNNNNNGC	3 cut(s)	899, 991, 1132
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	957
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	1443
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	2 cut(s)	666, 1063
BstYI	RGATCY	2 cut(s)	666, 1063
BstZ17I	GTATAC	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	1112
BsuTUI	ATCGAT	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	114
BtsI	GCAGTG	2 cut(s)	357, 959
BtsIMutI	CAGTG	3 cut(s)	357, 780, 959
Cfr13I	GGNCC	2 cut(s)	147, 938
ClaI	ATCGAT	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	485, 611
CviAII	CATG	7 cut(s)	115, 364, 371, 566, 954, 1092, 1205
CviQI	GTAC	2 cut(s)	485, 611
DdeI	CTNAG	3 cut(s)	1053, 1072, 1256
DpnI	GATC	7 cut(s)	44, 390, 668, 1048, 1065, 1212, 1449
DpnII	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
Eam1104I	CTCTTC	4 cut(s)	442, 612, 1293, 1311
EarI	CTCTTC	4 cut(s)	442, 612, 1293, 1311
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	1128
Eco32I	GATATC	1 cut(s)	1457
Eco47I	GGWCC	2 cut(s)	147, 938
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRI	GAATTC	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	1457
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	1128
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	7 cut(s)	118, 367, 374, 569, 957, 1095, 1208
FaqI	GGGAC	3 cut(s)	140, 1150, 1215
FatI	CATG	7 cut(s)	114, 363, 370, 565, 953, 1091, 1204
FbaI	TGATCA	1 cut(s)	1210
FblI	GTMKAC	3 cut(s)	212, 269, 777
Fnu4HI	GCNGC	1 cut(s)	1432
FriOI	GRGCYC	1 cut(s)	1128
Fsp4HI	GCNGC	1 cut(s)	1432
FspBI	CTAG	3 cut(s)	179, 699, 1445
GluI	GCNGC	1 cut(s)	1432
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	491
HapII	CCGG	1 cut(s)	912
Hin1II	CATG	7 cut(s)	118, 367, 374, 569, 957, 1095, 1208
HincII	GTYRAC	2 cut(s)	270, 658
HindII	GTYRAC	2 cut(s)	270, 658
HindIII	AAGCTT	2 cut(s)	758, 1055
HinfI	GANTC	4 cut(s)	5, 436, 865, 1300
HpaII	CCGG	1 cut(s)	912
HphI	GGTGA	3 cut(s)	742, 1041, 1267
Hpy166II	GTNNAC	7 cut(s)	213, 248, 270, 383, 658, 778, 959
Hpy188I	TCNGA	3 cut(s)	93, 278, 1257
Hpy188III	TCNNGA	8 cut(s)	23, 320, 344, 470, 664, 869, 1100, 1327
Hpy8I	GTNNAC	7 cut(s)	213, 248, 270, 383, 658, 778, 959
Hpy99I	CGWCG	2 cut(s)	97, 271
HpyAV	CCTTC	6 cut(s)	20, 160, 320, 475, 1109, 1138
HpyCH4III	ACNGT	3 cut(s)	97, 884, 1180
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	9 cut(s)	73, 248, 357, 462, 674, 812, 887, 902, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	899, 991, 1132
HpyF3I	CTNAG	3 cut(s)	1053, 1072, 1256
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	7 cut(s)	118, 367, 374, 569, 957, 1095, 1208
Ksp22I	TGATCA	1 cut(s)	1210
Kzo9I	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
LguI	GCTCTTC	1 cut(s)	1293
LmnI	GCTCC	2 cut(s)	29, 757
Lsp1109I	GCAGC	1 cut(s)	1443
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	179, 699, 1445
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	5 cut(s)	255, 344, 524, 553, 599
MalI	GATC	7 cut(s)	44, 390, 668, 1048, 1065, 1212, 1449
MbiI	CCGCTC	1 cut(s)	1089
MboI	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
MfeI	CAATTG	1 cut(s)	986
MflI	RGATCY	2 cut(s)	666, 1063
MhlI	GDGCHC	4 cut(s)	250, 1013, 1128, 1288
MlyI	GAGTC	2 cut(s)	874, 1294
MmeI	TCCRAC	1 cut(s)	116
MseI	TTAA	5 cut(s)	692, 1173, 1238, 1296, 1380
MslI	CAYNNNNRTG	1 cut(s)	362
MspCI	CTTAAG	1 cut(s)	1172
MspI	CCGG	1 cut(s)	912
MspR9I	CCNGG	1 cut(s)	522
MunI	CAATTG	1 cut(s)	986
Mva1269I	GAATGC	2 cut(s)	339, 814
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	3 cut(s)	899, 991, 1132
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
NlaIII	CATG	7 cut(s)	118, 367, 374, 569, 957, 1095, 1208
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	957
NspV	TTCGAA	3 cut(s)	8, 109, 852
PciSI	GCTCTTC	1 cut(s)	1293
PcsI	WCGNNNNNNNCGW	1 cut(s)	1119
PctI	GAATGC	2 cut(s)	339, 814
PfeI	GAWTC	2 cut(s)	5, 436
PkrI	GCNGC	1 cut(s)	1433
PleI	GAGTC	2 cut(s)	873, 1294
PpsI	GAGTC	2 cut(s)	873, 1294
PpuMI	RGGWCCY	1 cut(s)	938
PshAI	GACNNNNGTC	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	147, 938
PspPPI	RGGWCCY	1 cut(s)	938
PsrI	GAACNNNNNNTAC	2 cut(s)	196, 228
PsuI	RGATCY	2 cut(s)	666, 1063
RsaI	GTAC	2 cut(s)	486, 612
RsaNI	GTAC	2 cut(s)	485, 611
RseI	CAYNNNNRTG	1 cut(s)	362
SalI	GTCGAC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	1293
SaqAI	TTAA	5 cut(s)	692, 1173, 1238, 1296, 1380
SatI	GCNGC	1 cut(s)	1432
Sau3AI	GATC	7 cut(s)	42, 388, 666, 1046, 1063, 1210, 1447
Sau96I	GGNCC	2 cut(s)	147, 938
SchI	GAGTC	2 cut(s)	874, 1294
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	4 cut(s)	250, 1013, 1128, 1288
SfaNI	GCATC	1 cut(s)	622
SfuI	TTCGAA	3 cut(s)	8, 109, 852
SinI	GGWCC	2 cut(s)	147, 938
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	3 cut(s)	539, 1040, 1172
SmoI	CTYRAG	3 cut(s)	539, 1040, 1172
SsiI	CCGC	3 cut(s)	558, 805, 1087
SspI	AATATT	2 cut(s)	923, 1412
SspMI	CTAG	3 cut(s)	179, 699, 1445
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	97, 884, 1180
TaiI	ACGT	1 cut(s)	22
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	2 cut(s)	5, 436
Tru1I	TTAA	5 cut(s)	692, 1173, 1238, 1296, 1380
Tru9I	TTAA	5 cut(s)	692, 1173, 1238, 1296, 1380
TscAI	CASTG	3 cut(s)	364, 787, 966
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	1431
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	281, 659, 735
TspRI	CASTG	3 cut(s)	364, 787, 966
Vha464I	CTTAAG	1 cut(s)	1172
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	147, 938
XapI	RAATTY	3 cut(s)	702, 859, 1335
XceI	RCATGY	1 cut(s)	957
XmiI	GTMKAC	3 cut(s)	212, 269, 777
XspI	CTAG	3 cut(s)	179, 699, 1445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.