Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

39274719 .. 39276173

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGATTCGAAATCAGAACGTCCAGACGGAGCTGAAGATAGGATCAGCCAATTACCGGACGCTATTCTTGTTCATATACTATCCTATATTCCGACGGTCTATTCTGTCCGAACCACGGTTTTGTCTGAAAGATGGAACAACTTATGGACCTTCGTCCCCAACCTAGACTTCGACCAACAAGATTATTCCACAGAACATGGTCCTCCAAGTTCTAGTTTTGATGAATTTGCGAAGTTTGTTGATGGTGCACTCTCGTTACATAACTCATCGACAATCAGAAAGTTTCATCTTCATATTAAACACGACATTCAGCTTCAAGAGGAAGATTTTTCTCGCATTCGTGATTGGATATGCACTGCCATGGGGCATGAGATCTGTGAACTTGATCTTTCTTTTTGCCCTTATCAGTACCGGGGATGGGGAAAGAAGATAGAGTTGGATCTGCCTCGAAGAGTTTTCTTGTGCAAAACTCTGGAGGTTTTGAAGGTACATTCAAATTGTATCAACTATCCTCCTACTAAACCCGGTTACTTTCCAAGCCTCAAGTTCGCCAAAGTTACCGCAGAACATGGAGATAATTCCTCAATGGGAGAACTTTTTTGTAACTGCCCTGTACTTGAAGAGTTGTCTATCGATGCCGATCTTATGGAAAAAGATGTCAAAATCCGGATCTCTGCACCTGAATTGAAAACTTTAAGAACGAGCATTTATGTATATGATGAAAGAAAGGTGAAAGGGATTTCTATCAATGCCCCAAAGCTTGAAAACCTTGTTGTCTCCGGTCGTTTGACAAGATATATCTTCCGGAACGCAAAATCCCTAGTCAAAGCCAACATAGAACACACATATTTCGAAGAAAATTTGGGTCCAGAGCTTTTGAACCGTGCAACTGCTCTACTTGCAGGAGTTTCCAGTGTGGAGTATTTGCATTTATCAGGTTCTAAATTTGTGGCGTGTTCATTTCCAAATTTTAGTAATTTGAAGCAATTGAAGCTCACTCTTTTTGGTTGCTCTTATTTGGAATATGTAATGGAGTTGCTCAAGCGATCACCTAAGCTTGAAGATCTGGTCTTAGATATCGATGTCTGCTCATGGTATGATGAAAAATATGTCGAAGGATACGAGCCCTTCAAACCACCAGAGAAAGTGCCTATTTGTGTGGTGTCACACCTTAAGACTGTTTCCATTACTCACATCACAGGACATGATGATCAGTTGGATTTGGTGGAGTATTTGTTGAAGTGCGGTTGTGTTCTGAAGAAGATATCTCTGTCCACTTGTGGTAAGCTTCTTTTCAAGACCCGCCATATGACTGAAGAGAAGTTCAAGAGGGAACTTTTGAAGTATCAAAGGAGTTCAAACACTTGTGAAGTTGAAGTTGAGTTTGAAAATAAAGGGGTAGTTTCATGGAGTTGTTCAGACTGTGGAAGCAGCATCCTCCATCTAAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

484

Amino Acids

55.4

Weight (kDa)

6.09

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 52	7.2e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	84 - 430	4.8e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	115 - 263	2.3e-09	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	380 - 423	7.8e-10	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	666, 804
AciI	CCGC	3 cut(s)	561, 1245, 1303
AclWI	GGATC	3 cut(s)	50, 447, 677
AcsI	RAATTY	4 cut(s)	224, 859, 944, 967
AcuI	CTGAAG	3 cut(s)	54, 1277, 1335
AfaI	GTAC	3 cut(s)	410, 489, 615
AfiI	CCNNNNNNNGG	3 cut(s)	55, 115, 418
AflII	CTTAAG	1 cut(s)	1172
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 419, 451
AloI	GAACNNNNNNTCC	2 cut(s)	800, 832
AluBI	AGCT	7 cut(s)	32, 313, 760, 874, 994, 1057, 1288
AluI	AGCT	7 cut(s)	32, 313, 760, 874, 994, 1057, 1288
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	781
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	50, 447, 677
Aor13HI	TCCGGA	2 cut(s)	666, 804
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	1431
ApoI	RAATTY	4 cut(s)	224, 859, 944, 967
AspS9I	GGNCC	3 cut(s)	147, 200, 866
AsuC2I	CCSGG	2 cut(s)	413, 525
AsuHPI	GGTGA	2 cut(s)	742, 1041
AsuII	TTCGAA	2 cut(s)	8, 852
AvaII	GGWCC	3 cut(s)	147, 200, 866
BaeGI	GKGCMC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	1128
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	1443
BccI	CCATC	4 cut(s)	126, 236, 411, 1449
BciVI	GTATCC	1 cut(s)	1112
BclI	TGATCA	1 cut(s)	1210
BcnI	CCSGG	2 cut(s)	413, 525
BcoDI	GTCTC	1 cut(s)	781
BfaI	CTAG	3 cut(s)	164, 213, 821
BfrI	CTTAAG	1 cut(s)	1172
BfuI	GTATCC	1 cut(s)	1112
BglII	AGATCT	2 cut(s)	372, 1063
BisI	GCNGC	1 cut(s)	1432
BlsI	GCNGC	1 cut(s)	1433
Bme1390I	CCNGG	2 cut(s)	413, 525
Bme18I	GGWCC	3 cut(s)	147, 200, 866
BmgT120I	GGNCC	3 cut(s)	147, 200, 866
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	2 cut(s)	413, 525
BmsI	GCATC	2 cut(s)	625, 1443
BoxI	GACNNNNGTC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	1053
Bpu14I	TTCGAA	2 cut(s)	8, 852
BpuEI	CTTGAG	2 cut(s)	527, 1025
BpuMI	CCSGG	2 cut(s)	413, 525
Bsa29I	ATCGAT	2 cut(s)	633, 1080
BsaBI	GATNNNNATC	2 cut(s)	639, 743
BsaJI	CCNNGG	3 cut(s)	114, 360, 412
BsaWI	WCCGGW	4 cut(s)	55, 666, 779, 804
BsaXI	ACNNNNNCTCC	2 cut(s)	1220, 1250
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 115, 418
Bse1I	ACTGG	1 cut(s)	912
Bse8I	GATNNNNATC	2 cut(s)	639, 743
BseAI	TCCGGA	2 cut(s)	666, 804
BseCI	ATCGAT	2 cut(s)	633, 1080
BseDI	CCNNGG	3 cut(s)	114, 360, 412
BseGI	GGATG	2 cut(s)	422, 1434
BseJI	GATNNNNATC	2 cut(s)	639, 743
BseLI	CCNNNNNNNGG	3 cut(s)	55, 115, 418
BseNI	ACTGG	1 cut(s)	912
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	1443
BsgI	GTGCAG	1 cut(s)	660
Bsh1285I	CGRYCG	1 cut(s)	784
BshVI	ATCGAT	2 cut(s)	633, 1080
BsiEI	CGRYCG	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	6 cut(s)	56, 412, 525, 667, 780, 805
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	55, 115, 418
BsmAI	GTCTC	1 cut(s)	781
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	336
Bsp119I	TTCGAA	2 cut(s)	8, 852
Bsp1286I	GDGCHC	2 cut(s)	250, 1128
Bsp13I	TCCGGA	2 cut(s)	666, 804
Bsp143I	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	3 cut(s)	561, 1245, 1303
BspDI	ATCGAT	2 cut(s)	633, 1080
BspEI	TCCGGA	2 cut(s)	666, 804
BspLI	GGNNCC	1 cut(s)	867
BspPI	GGATC	3 cut(s)	50, 447, 677
BspT104I	TTCGAA	2 cut(s)	8, 852
BspTI	CTTAAG	1 cut(s)	1172
BsrI	ACTGG	1 cut(s)	912
BssECI	CCNNGG	3 cut(s)	114, 360, 412
BssMI	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
BssT1I	CCWWGG	1 cut(s)	360
Bst4CI	ACNGT	5 cut(s)	97, 118, 884, 1180, 1424
Bst6I	CTCTTC	3 cut(s)	445, 615, 1311
BstAFI	CTTAAG	1 cut(s)	1172
BstBI	TTCGAA	2 cut(s)	8, 852
BstDEI	CTNAG	2 cut(s)	1053, 1072
BstDSI	CCRYGG	2 cut(s)	114, 360
BstF5I	GGATG	2 cut(s)	422, 1434
BstKTI	GATC	9 cut(s)	45, 375, 388, 442, 643, 672, 1049, 1066, 1213
BstMAI	GTCTC	1 cut(s)	781
BstMBI	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
BstMCI	CGRYCG	1 cut(s)	784
BstMWI	GCNNNNNNNGC	2 cut(s)	899, 991
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	411, 523
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	1443
BstX2I	RGATCY	4 cut(s)	372, 439, 669, 1063
BstYI	RGATCY	4 cut(s)	372, 439, 669, 1063
Bsu15I	ATCGAT	2 cut(s)	633, 1080
BsuI	GTATCC	1 cut(s)	1112
BsuTUI	ATCGAT	2 cut(s)	633, 1080
BtgI	CCRYGG	2 cut(s)	114, 360
BtsCI	GGATG	2 cut(s)	422, 1434
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 919
Cfr13I	GGNCC	3 cut(s)	147, 200, 866
ClaI	ATCGAT	2 cut(s)	633, 1080
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	409, 488, 614
CviAII	CATG	7 cut(s)	197, 361, 368, 569, 1092, 1205, 1407
CviQI	GTAC	3 cut(s)	409, 488, 614
DdeI	CTNAG	2 cut(s)	1053, 1072
DpnI	GATC	9 cut(s)	44, 374, 387, 441, 642, 671, 1048, 1065, 1212
DpnII	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
Eam1104I	CTCTTC	3 cut(s)	445, 615, 1311
EarI	CTCTTC	3 cut(s)	445, 615, 1311
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	1128
Eco32I	GATATC	2 cut(s)	1078, 1266
Eco47I	GGWCC	3 cut(s)	147, 200, 866
Eco57I	CTGAAG	3 cut(s)	54, 1277, 1335
EcoRV	GATATC	2 cut(s)	1078, 1266
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	1128
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	7 cut(s)	200, 364, 371, 572, 1095, 1208, 1410
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	7 cut(s)	196, 360, 367, 568, 1091, 1204, 1406
FauI	CCCGC	1 cut(s)	1310
FauNDI	CATATG	1 cut(s)	1308
FbaI	TGATCA	1 cut(s)	1210
Fnu4HI	GCNGC	1 cut(s)	1432
FokI	GGATG	2 cut(s)	429, 1421
FriOI	GRGCYC	1 cut(s)	1128
Fsp4HI	GCNGC	1 cut(s)	1432
FspBI	CTAG	3 cut(s)	164, 213, 821
GluI	GCNGC	1 cut(s)	1432
GsuI	CTGGAG	1 cut(s)	494
HapII	CCGG	6 cut(s)	56, 412, 525, 667, 780, 805
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	7 cut(s)	200, 364, 371, 572, 1095, 1208, 1410
HindIII	AAGCTT	3 cut(s)	758, 1055, 1286
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	6 cut(s)	56, 412, 525, 667, 780, 805
HphI	GGTGA	2 cut(s)	742, 1041
Hpy166II	GTNNAC	3 cut(s)	248, 380, 1275
Hpy188I	TCNGA	7 cut(s)	16, 93, 110, 127, 278, 1257, 1420
Hpy188III	TCNNGA	9 cut(s)	23, 317, 341, 473, 667, 805, 869, 1297, 1327
Hpy8I	GTNNAC	3 cut(s)	248, 380, 1275
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	4 cut(s)	160, 478, 1109, 1138
HpyCH4III	ACNGT	5 cut(s)	97, 118, 884, 1180, 1424
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	7 cut(s)	248, 354, 465, 677, 887, 902, 928
HpyF10VI	GCNNNNNNNGC	2 cut(s)	899, 991
HpyF3I	CTNAG	2 cut(s)	1053, 1072
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	7 cut(s)	200, 364, 371, 572, 1095, 1208, 1410
Kpn2I	TCCGGA	2 cut(s)	666, 804
Ksp22I	TGATCA	1 cut(s)	1210
Kzo9I	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	1443
LweI	GCATC	2 cut(s)	625, 1443
MaeI	CTAG	3 cut(s)	164, 213, 821
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	5 cut(s)	255, 527, 556, 602, 1164
MalI	GATC	9 cut(s)	44, 374, 387, 441, 642, 671, 1048, 1065, 1212
MboI	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
MfeI	CAATTG	1 cut(s)	986
MflI	RGATCY	4 cut(s)	372, 439, 669, 1063
MhlI	GDGCHC	2 cut(s)	250, 1128
MmeI	TCCRAC	3 cut(s)	116, 417, 1197
MnlI	CCTC	9 cut(s)	213, 313, 456, 469, 522, 551, 592, 1323, 1448
MroI	TCCGGA	2 cut(s)	666, 804
MseI	TTAA	3 cut(s)	297, 695, 1173
MslI	CAYNNNNRTG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	1172
MspI	CCGG	6 cut(s)	56, 412, 525, 667, 780, 805
MspR9I	CCNGG	2 cut(s)	413, 525
MunI	CAATTG	1 cut(s)	986
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	899, 991
NciI	CCSGG	2 cut(s)	413, 525
NcoI	CCATGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	1308
NdeII	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
NlaIII	CATG	7 cut(s)	200, 364, 371, 572, 1095, 1208, 1410
NlaIV	GGNNCC	1 cut(s)	867
NmuCI	GTSAC	1 cut(s)	1164
NspV	TTCGAA	2 cut(s)	8, 852
PcsI	WCGNNNNNNNCGW	1 cut(s)	1119
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	1433
PshAI	GACNNNNGTC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	3 cut(s)	147, 200, 866
PsuI	RGATCY	4 cut(s)	372, 439, 669, 1063
RsaI	GTAC	3 cut(s)	410, 489, 615
RsaNI	GTAC	3 cut(s)	409, 488, 614
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	297, 695, 1173
SatI	GCNGC	1 cut(s)	1432
Sau3AI	GATC	9 cut(s)	42, 372, 385, 439, 640, 669, 1046, 1063, 1210
Sau96I	GGNCC	3 cut(s)	147, 200, 866
ScrFI	CCNGG	2 cut(s)	413, 525
SduI	GDGCHC	2 cut(s)	250, 1128
SfaNI	GCATC	2 cut(s)	625, 1443
SfuI	TTCGAA	2 cut(s)	8, 852
SinI	GGWCC	3 cut(s)	147, 200, 866
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	3 cut(s)	542, 1040, 1172
SmoI	CTYRAG	3 cut(s)	542, 1040, 1172
SsiI	CCGC	3 cut(s)	561, 1245, 1303
SspMI	CTAG	3 cut(s)	164, 213, 821
StyD4I	CCNGG	2 cut(s)	411, 523
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	5 cut(s)	97, 118, 884, 1180, 1424
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	8 cut(s)	8, 171, 269, 448, 633, 852, 1080, 1113
TatI	WGTACW	1 cut(s)	613
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	297, 695, 1173
Tru9I	TTAA	3 cut(s)	297, 695, 1173
TscAI	CASTG	2 cut(s)	361, 919
TseFI	GTSAC	1 cut(s)	1164
TseI	GCWGC	1 cut(s)	1431
Tsp45I	GTSAC	1 cut(s)	1164
TspDTI	ATGAA	8 cut(s)	62, 237, 275, 281, 735, 948, 1116, 1395
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	361, 919
Vha464I	CTTAAG	1 cut(s)	1172
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	3 cut(s)	147, 200, 866
XapI	RAATTY	4 cut(s)	224, 859, 944, 967
XspI	CTAG	3 cut(s)	164, 213, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.