Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

52171909 .. 52174393

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAGGTTCCGGTTTGTTCGTCAACTACTTCCCTACCTTCAAATGGCTTCAATCTCAGCCATTGGATCTCCTCAGAGACCTCTAACCTCATCGGTCGGAAAATCTCGAACCCGTGTACGGTGCGGACCCAAATCTTTTCTTCCCCGGAAGCCGAGAAATCTTCTGATTCAGGTGCAGGCGGCGGAAGCAATCTTATCGAGCGAAGAAAGCTTGTGTTTTCATCCATCGGAACTGTAGCTGCGGCTTTCTGTAATGCTTTTAAGGATAAACTCGCCCTGGCATCTCAGTTTGCAGACATGCCAGCAATTAGAGGAAAGGACTACGGCAAGTCGAAGATGAGTTATCCGGACTACACCGAAACTGAATCGGGTCTTCAGTATAAGGACTTGCGAGCAGGAGATGGCCCCAAACCCAAGGTTGGGGATATAGTAGTGATTGATTGGGATGGTTATACCATTGGATACTACGGTCGCATATTTGAAGCTCGAAATAAGACAAAGGGTGGTTCATTTGAGGGTGATGACAAGGCCTTTTTCAAATTCAGAGTAGGATCTCAAGAGGTGATACCAGCTTTTGAGGAAGCTATTACAGGCATGTCTCTTGGTGGCGTTAGAAGGATCATAGTGCCTCCAGAATTGGGATATCCGGACAATGACTACAACAAGAGTGGCCCAAGACCCACAACATTTTCGGGCCAACGAGCCTTGGATTTTGTGCTGGGGAACCAAGGGCTGATAGACAAGACTCTTCTGTTTGATATTGAGCTGATTAAGATCATTCCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

262

Amino Acids

28.51

Weight (kDa)

8.3

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	137 - 257	2.5e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	346, 646
AciI	CCGC	4 cut(s)	124, 180, 183, 242
AclWI	GGATC	3 cut(s)	74, 559, 626
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	5 cut(s)	44, 118, 419, 420, 638
AgsI	TTSAA	4 cut(s)	42, 52, 482, 538
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	6 cut(s)	211, 239, 485, 572, 584, 766
AluI	AGCT	6 cut(s)	211, 239, 485, 572, 584, 766
Alw26I	GTCTC	2 cut(s)	71, 603
AlwI	GGATC	3 cut(s)	74, 559, 626
Aor13HI	TCCGGA	2 cut(s)	346, 646
AoxI	GGCC	4 cut(s)	403, 528, 670, 694
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	539
AspS9I	GGNCC	4 cut(s)	126, 404, 671, 694
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	530, 574
AvaII	GGWCC	1 cut(s)	126
BaeI	ACNNNNGTAYC	2 cut(s)	454, 487
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	233, 395, 440
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	71, 603
BfmI	CTRYAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	181, 240, 243
BlsI	GCNGC	3 cut(s)	182, 241, 244
Bme1390I	CCNGG	2 cut(s)	146, 278
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	4 cut(s)	126, 404, 671, 694
BmiI	GGNNCC	4 cut(s)	9, 128, 406, 725
BmrFI	CCNGG	2 cut(s)	146, 278
BmsI	GCATC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	144, 276, 414, 705, 727
BsaWI	WCCGGW	3 cut(s)	10, 346, 646
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 118, 419, 420, 638
Bse8I	GATNNNNATC	1 cut(s)	773
BseAI	TCCGGA	2 cut(s)	346, 646
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	5 cut(s)	144, 276, 414, 705, 727
BseGI	GGATG	2 cut(s)	221, 451
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	5 cut(s)	44, 118, 419, 420, 638
BseMII	CTCAG	3 cut(s)	70, 87, 299
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	718
BsgI	GTGCAG	1 cut(s)	195
Bsh1285I	CGRYCG	2 cut(s)	97, 472
BshFI	GGCC	4 cut(s)	405, 530, 672, 696
BsiEI	CGRYCG	2 cut(s)	97, 472
BsiSI	CCGG	4 cut(s)	11, 146, 347, 647
BslI	CCNNNNNNNGG	5 cut(s)	44, 118, 419, 420, 638
BsmAI	GTCTC	2 cut(s)	71, 603
BsnI	GGCC	4 cut(s)	405, 530, 672, 696
Bso31I	GGTCTC	1 cut(s)	71
Bsp13I	TCCGGA	2 cut(s)	346, 646
Bsp143I	GATC	4 cut(s)	66, 551, 618, 774
BspACI	CCGC	4 cut(s)	124, 180, 183, 242
BspANI	GGCC	4 cut(s)	405, 530, 672, 696
BspCNI	CTCAG	3 cut(s)	69, 86, 298
BspEI	TCCGGA	2 cut(s)	346, 646
BspLI	GGNNCC	4 cut(s)	9, 128, 406, 725
BspPI	GGATC	3 cut(s)	74, 559, 626
BspTNI	GGTCTC	1 cut(s)	71
BssECI	CCNNGG	5 cut(s)	144, 276, 414, 705, 727
BssMI	GATC	4 cut(s)	66, 551, 618, 774
BssT1I	CCWWGG	3 cut(s)	414, 705, 727
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	121, 235, 470
Bst6I	CTCTTC	1 cut(s)	753
BstC8I	GCNNGC	3 cut(s)	178, 303, 393
BstDEI	CTNAG	3 cut(s)	56, 73, 285
BstF5I	GGATG	2 cut(s)	221, 451
BstKTI	GATC	4 cut(s)	69, 554, 621, 777
BstMAI	GTCTC	2 cut(s)	71, 603
BstMBI	GATC	4 cut(s)	66, 551, 618, 774
BstMCI	CGRYCG	2 cut(s)	97, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 208
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	2 cut(s)	301, 598
BstSCI	CCNGG	2 cut(s)	144, 276
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	66, 551
BstYI	RGATCY	2 cut(s)	66, 551
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	4 cut(s)	405, 530, 672, 696
BtsCI	GGATG	2 cut(s)	221, 451
Cac8I	GCNNGC	3 cut(s)	178, 303, 393
Cfr13I	GGNCC	4 cut(s)	126, 404, 671, 694
Csp6I	GTAC	1 cut(s)	117
CspCI	CAANNNNNGTGG	2 cut(s)	649, 684
CviAII	CATG	2 cut(s)	298, 595
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	3 cut(s)	56, 73, 285
DpnI	GATC	4 cut(s)	68, 553, 620, 776
DpnII	GATC	4 cut(s)	66, 551, 618, 774
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	3 cut(s)	414, 705, 727
Eco147I	AGGCCT	1 cut(s)	530
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	644
EcoT14I	CCWWGG	3 cut(s)	414, 705, 727
ErhI	CCWWGG	3 cut(s)	414, 705, 727
FaeI	CATG	2 cut(s)	301, 598
FaiI	YATR	7 cut(s)	299, 381, 428, 453, 476, 596, 623
FatI	CATG	2 cut(s)	297, 594
Fnu4HI	GCNGC	3 cut(s)	181, 240, 243
FokI	GGATG	2 cut(s)	208, 458
Fsp4HI	GCNGC	3 cut(s)	181, 240, 243
GluI	GCNGC	3 cut(s)	181, 240, 243
GsaI	CCCAGC	1 cut(s)	722
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	405, 530, 672, 696
HapII	CCGG	4 cut(s)	11, 146, 347, 647
Hin1II	CATG	2 cut(s)	301, 598
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	167, 365, 745
HpaII	CCGG	4 cut(s)	11, 146, 347, 647
HphI	GGTGA	2 cut(s)	530, 574
Hpy166II	GTNNAC	2 cut(s)	24, 117
Hpy188I	TCNGA	5 cut(s)	76, 99, 166, 230, 545
Hpy188III	TCNNGA	5 cut(s)	106, 347, 557, 632, 647
Hpy8I	GTNNAC	2 cut(s)	24, 117
HpyAV	CCTTC	2 cut(s)	48, 609
HpyCH4III	ACNGT	3 cut(s)	121, 235, 470
HpyCH4V	TGCA	2 cut(s)	176, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 208
HpyF3I	CTNAG	3 cut(s)	56, 73, 285
Hsp92II	CATG	2 cut(s)	301, 598
Kpn2I	TCCGGA	2 cut(s)	346, 646
Kzo9I	GATC	4 cut(s)	66, 551, 618, 774
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	290
MalI	GATC	4 cut(s)	68, 553, 620, 776
MboI	GATC	4 cut(s)	66, 551, 618, 774
MboII	GAAGA	6 cut(s)	132, 153, 216, 346, 365, 740
MflI	RGATCY	2 cut(s)	66, 551
MluCI	AATT	3 cut(s)	306, 539, 635
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	8 cut(s)	82, 91, 98, 305, 508, 553, 571, 639
MroI	TCCGGA	2 cut(s)	346, 646
MseI	TTAA	2 cut(s)	261, 771
MspI	CCGG	4 cut(s)	11, 146, 347, 647
MspR9I	CCNGG	2 cut(s)	146, 278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	186, 208
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	4 cut(s)	66, 551, 618, 774
NlaIII	CATG	2 cut(s)	301, 598
NlaIV	GGNNCC	4 cut(s)	9, 128, 406, 725
NmeAIII	GCCGAG	1 cut(s)	178
NspI	RCATGY	2 cut(s)	301, 598
PceI	AGGCCT	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	167, 365
PkrI	GCNGC	3 cut(s)	182, 241, 244
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	9, 128, 406, 725
PspPI	GGNCC	4 cut(s)	126, 404, 671, 694
PsuI	RGATCY	2 cut(s)	66, 551
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	261, 771
SatI	GCNGC	3 cut(s)	181, 240, 243
Sau3AI	GATC	4 cut(s)	66, 551, 618, 774
Sau96I	GGNCC	4 cut(s)	126, 404, 671, 694
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	2 cut(s)	146, 278
SfaNI	GCATC	1 cut(s)	290
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	3 cut(s)	306, 539, 635
SseBI	AGGCCT	1 cut(s)	530
SsiI	CCGC	4 cut(s)	124, 180, 183, 242
StuI	AGGCCT	1 cut(s)	530
StyD4I	CCNGG	2 cut(s)	144, 276
StyI	CCWWGG	3 cut(s)	414, 705, 727
TaaI	ACNGT	3 cut(s)	121, 235, 470
TaqI	TCGA	4 cut(s)	107, 198, 332, 487
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	306, 539, 635
TauI	GCSGC	2 cut(s)	183, 245
TfiI	GAWTC	2 cut(s)	167, 365
Tru1I	TTAA	2 cut(s)	261, 771
Tru9I	TTAA	2 cut(s)	261, 771
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	17, 210, 498
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	2 cut(s)	301, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.