Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022301.1

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Forward (+)

8995 .. 10761

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022301.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggcttcaatctcagccattggatctcctcagcgacctctaacctcatcggtcggaaaatctcgaacccgtgtacggcgaggacccaaatcttttcttcccccggaagccgagaaatcttctgattcaggtgcaggcggcggaagcaacctcatcgagcgaagaaaacttgtgttttcatccattggaactgtagctgcggctttctgtaatgcttttaaggataaactcgccctggcatctcagtttgcagacatgccagcaattaggggaaaggactacggcaagtcgaagatgagttatccggactacaccgaaactgaatcgggtcttcagtataaggacttgcgagcaggagatggccccaaacccaaggttggggatacagtagtgattgattgggatggttataccattggatactacggtcgtatatttgaagctcgaaataaaacaaaaggtggttcatttgagggtgatgacaaggcttttttcaaattcagagtaggatctcaagaggtgataccagctttcgaggaagctattacaggcatgtctcttggtggcgttagaaggatcatagtgcctccagaattgggatatccggacaatgactacaacaagagtggcccaagacccacaacattttcgggccaacgagccttggattttgtgctggggaaccaagggctgatagacaagactcttctgtttgatattgagctgattaagatcataccaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

248

Amino Acids

26.91

Weight (kDa)

9.26

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	304, 604
AciI	CCGC	3 cut(s)	138, 141, 200
AclWI	GGATC	3 cut(s)	31, 517, 584
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	4 cut(s)	75, 377, 378, 596
AgsI	TTSAA	3 cut(s)	9, 440, 496
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	5 cut(s)	197, 443, 530, 542, 724
AluI	AGCT	5 cut(s)	197, 443, 530, 542, 724
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	3 cut(s)	31, 517, 584
Aor13HI	TCCGGA	2 cut(s)	304, 604
AoxI	GGCC	3 cut(s)	361, 628, 652
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	497
AspS9I	GGNCC	4 cut(s)	83, 362, 629, 652
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	488, 532
AvaII	GGWCC	1 cut(s)	83
BaeI	ACNNNNGTAYC	4 cut(s)	375, 408, 412, 445
BbsI	GAAGAC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	353, 398
BceAI	ACGGC	2 cut(s)	92, 298
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	2 cut(s)	376, 413
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	2 cut(s)	376, 413
BisI	GCNGC	3 cut(s)	139, 198, 201
BlsI	GCNGC	3 cut(s)	140, 199, 202
Bme1390I	CCNGG	2 cut(s)	104, 236
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	4 cut(s)	83, 362, 629, 652
BmiI	GGNNCC	3 cut(s)	85, 364, 683
BmrFI	CCNGG	2 cut(s)	104, 236
BmsI	GCATC	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	731
BsaJI	CCNNGG	5 cut(s)	102, 234, 372, 663, 685
BsaWI	WCCGGW	2 cut(s)	304, 604
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 377, 378, 596
Bse8I	GATNNNNATC	1 cut(s)	731
BseAI	TCCGGA	2 cut(s)	304, 604
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	5 cut(s)	102, 234, 372, 663, 685
BseGI	GGATG	2 cut(s)	179, 409
BseJI	GATNNNNATC	1 cut(s)	731
BseLI	CCNNNNNNNGG	4 cut(s)	75, 377, 378, 596
BseMII	CTCAG	3 cut(s)	27, 44, 257
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	676
BsgI	GTGCAG	1 cut(s)	153
Bsh1285I	CGRYCG	2 cut(s)	54, 430
BshFI	GGCC	3 cut(s)	363, 630, 654
BsiEI	CGRYCG	2 cut(s)	54, 430
BsiSI	CCGG	3 cut(s)	104, 305, 605
BslI	CCNNNNNNNGG	4 cut(s)	75, 377, 378, 596
BsmAI	GTCTC	1 cut(s)	561
BsnI	GGCC	3 cut(s)	363, 630, 654
Bsp13I	TCCGGA	2 cut(s)	304, 604
Bsp143I	GATC	4 cut(s)	23, 509, 576, 732
BspACI	CCGC	3 cut(s)	138, 141, 200
BspANI	GGCC	3 cut(s)	363, 630, 654
BspCNI	CTCAG	3 cut(s)	26, 43, 256
BspEI	TCCGGA	2 cut(s)	304, 604
BspLI	GGNNCC	3 cut(s)	85, 364, 683
BspPI	GGATC	3 cut(s)	31, 517, 584
BssECI	CCNNGG	5 cut(s)	102, 234, 372, 663, 685
BssMI	GATC	4 cut(s)	23, 509, 576, 732
BssT1I	CCWWGG	3 cut(s)	372, 663, 685
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	193, 388, 428
Bst6I	CTCTTC	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	136, 261, 351
BstDEI	CTNAG	3 cut(s)	13, 30, 243
BstF5I	GGATG	2 cut(s)	179, 409
BstKTI	GATC	4 cut(s)	26, 512, 579, 735
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	4 cut(s)	23, 509, 576, 732
BstMCI	CGRYCG	2 cut(s)	54, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	259, 556
BstSCI	CCNGG	2 cut(s)	102, 234
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	23, 509
BstYI	RGATCY	2 cut(s)	23, 509
BsuI	GTATCC	2 cut(s)	376, 413
BsuRI	GGCC	3 cut(s)	363, 630, 654
BtsCI	GGATG	2 cut(s)	179, 409
Cac8I	GCNNGC	3 cut(s)	136, 261, 351
Cfr13I	GGNCC	4 cut(s)	83, 362, 629, 652
Csp6I	GTAC	1 cut(s)	74
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	2 cut(s)	256, 553
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	13, 30, 243
DpnI	GATC	4 cut(s)	25, 511, 578, 734
DpnII	GATC	4 cut(s)	23, 509, 576, 732
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	3 cut(s)	372, 663, 685
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	602
EcoT14I	CCWWGG	3 cut(s)	372, 663, 685
ErhI	CCWWGG	3 cut(s)	372, 663, 685
FaeI	CATG	2 cut(s)	259, 556
FaiI	YATR	7 cut(s)	257, 339, 411, 434, 554, 581, 737
FatI	CATG	2 cut(s)	255, 552
Fnu4HI	GCNGC	3 cut(s)	139, 198, 201
FokI	GGATG	2 cut(s)	166, 416
Fsp4HI	GCNGC	3 cut(s)	139, 198, 201
GluI	GCNGC	3 cut(s)	139, 198, 201
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	3 cut(s)	363, 630, 654
HapII	CCGG	3 cut(s)	104, 305, 605
Hin1II	CATG	2 cut(s)	259, 556
HinfI	GANTC	3 cut(s)	125, 323, 703
HpaII	CCGG	3 cut(s)	104, 305, 605
HphI	GGTGA	2 cut(s)	488, 532
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	56, 124, 503
Hpy188III	TCNNGA	5 cut(s)	63, 305, 515, 590, 605
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	3 cut(s)	193, 388, 428
HpyCH4V	TGCA	2 cut(s)	134, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	3 cut(s)	13, 30, 243
Hsp92II	CATG	2 cut(s)	259, 556
Kpn2I	TCCGGA	2 cut(s)	304, 604
Kzo9I	GATC	4 cut(s)	23, 509, 576, 732
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	248
MalI	GATC	4 cut(s)	25, 511, 578, 734
MboI	GATC	4 cut(s)	23, 509, 576, 732
MboII	GAAGA	6 cut(s)	89, 111, 174, 304, 323, 698
MflI	RGATCY	2 cut(s)	23, 509
MluCI	AATT	3 cut(s)	264, 497, 593
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	9 cut(s)	39, 48, 55, 74, 161, 466, 511, 529, 597
MroI	TCCGGA	2 cut(s)	304, 604
MseI	TTAA	2 cut(s)	219, 729
MspI	CCGG	3 cut(s)	104, 305, 605
MspR9I	CCNGG	2 cut(s)	104, 236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	23, 509, 576, 732
NlaIII	CATG	2 cut(s)	259, 556
NlaIV	GGNNCC	3 cut(s)	85, 364, 683
NmeAIII	GCCGAG	1 cut(s)	136
NspI	RCATGY	2 cut(s)	259, 556
PfeI	GAWTC	2 cut(s)	125, 323
PkrI	GCNGC	3 cut(s)	140, 199, 202
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	85, 364, 683
PspPI	GGNCC	4 cut(s)	83, 362, 629, 652
PspPPI	RGGWCCY	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	23, 509
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	219, 729
SatI	GCNGC	3 cut(s)	139, 198, 201
Sau3AI	GATC	4 cut(s)	23, 509, 576, 732
Sau96I	GGNCC	4 cut(s)	83, 362, 629, 652
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	104, 236
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	264, 497, 593
SsiI	CCGC	3 cut(s)	138, 141, 200
StyD4I	CCNGG	2 cut(s)	102, 234
StyI	CCWWGG	3 cut(s)	372, 663, 685
TaaI	ACNGT	3 cut(s)	193, 388, 428
TaqI	TCGA	5 cut(s)	64, 156, 290, 445, 534
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	264, 497, 593
TauI	GCSGC	2 cut(s)	141, 203
TfiI	GAWTC	2 cut(s)	125, 323
Tru1I	TTAA	2 cut(s)	219, 729
Tru9I	TTAA	2 cut(s)	219, 729
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	168, 456
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	2 cut(s)	259, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.