Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Reverse (-)

51004920 .. 51009927

Gene Structure 5008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG288800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTTCAATCTCAGCCATTGGATCTCCTCAGCGACCTCTAACCTCATCGGTCGGAAAATCTCTAACCCTTGTACGGCGCGGACCCAAATCTTTTCTTCCCCCGGAAGCCGAGAAATCTTCTGCTTCAGGTGCAGGCGGCGGAAGCAACCTCATCGAGCGAAGAAAACTTGTGTTTTCATCCATTGGAACTGTAGCCGCGGCTTTCTGTAATGCTTTTAAGGATAAACTCGCCCTGGCATCTCAGTTTGCAGACATGCCTGCAATTAGGGGAAAGGACTACGGCAAGTCGAAGATGAGTTATCCGGACTACACCGAAACTGAATCGGGTCTTCAGTATAAGGACTTGCGAGCAGGAGATGGCCCCAAACCCAAGGTTGGGGATACAGTAGTGATTGATTGGGATGGTTATACCATTGGATACTACGGTCGTATATTTGAAGCTCGAAATAAAACAAAAGGTGGTTCATTTGAGGGTGATGACAAGGCTTTTTTCAAATTCAGAGTAGGATCTCAAGAGGTGATACCAGCTTTTGAGGAAGCTATTACAGGCATGTCTCTTGGTGGCGTTAGAAGGTGCTGCATCTTGTTTTCTGTAGCTTATAGCTTTTGCTTATGGAATTTTCAAGCAGTTGGATTGAATGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

216

Amino Acids

23.25

Weight (kDa)

9.23

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	123 - 201	9.2e-09	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	81, 200
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	5 cut(s)	81, 138, 141, 198, 200
AclWI	GGATC	2 cut(s)	31, 517
AcsI	RAATTY	2 cut(s)	497, 619
AcuI	CTGAAG	2 cut(s)	111, 317
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	75, 377, 378
AgsI	TTSAA	5 cut(s)	9, 440, 496, 626, 640
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	5 cut(s)	443, 530, 542, 599, 606
AluI	AGCT	5 cut(s)	443, 530, 542, 599, 606
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	31, 517
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	579
ApoI	RAATTY	2 cut(s)	497, 619
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	83, 362
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	488, 532
AvaII	GGWCC	1 cut(s)	83
BaeI	ACNNNNGTAYC	4 cut(s)	375, 408, 412, 445
BbsI	GAAGAC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	2 cut(s)	353, 398
BceAI	ACGGC	2 cut(s)	92, 298
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	2 cut(s)	376, 413
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	192, 594
BfuI	GTATCC	2 cut(s)	376, 413
BisI	GCNGC	4 cut(s)	139, 198, 201, 580
BlsI	GCNGC	4 cut(s)	140, 199, 202, 581
Bme1390I	CCNGG	2 cut(s)	104, 236
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	83, 362
BmiI	GGNNCC	2 cut(s)	85, 364
BmrFI	CCNGG	2 cut(s)	104, 236
BmsI	GCATC	2 cut(s)	248, 591
BpiI	GAAGAC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	102, 198, 234, 372
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 377, 378
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	4 cut(s)	102, 198, 234, 372
BseGI	GGATG	2 cut(s)	179, 409
BseLI	CCNNNNNNNGG	3 cut(s)	75, 377, 378
BseMII	CTCAG	3 cut(s)	27, 44, 257
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	2 cut(s)	81, 200
Bsh1285I	CGRYCG	2 cut(s)	54, 430
BshFI	GGCC	1 cut(s)	363
BsiEI	CGRYCG	2 cut(s)	54, 430
BsiSI	CCGG	2 cut(s)	104, 305
BslI	CCNNNNNNNGG	3 cut(s)	75, 377, 378
BsmAI	GTCTC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	23, 509
BspACI	CCGC	5 cut(s)	81, 138, 141, 198, 200
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	3 cut(s)	26, 43, 256
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	2 cut(s)	81, 200
BspLI	GGNNCC	2 cut(s)	85, 364
BspPI	GGATC	2 cut(s)	31, 517
BssECI	CCNNGG	4 cut(s)	102, 198, 234, 372
BssMI	GATC	2 cut(s)	23, 509
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	193, 388, 428
BstC8I	GCNNGC	3 cut(s)	136, 261, 351
BstDEI	CTNAG	3 cut(s)	13, 30, 243
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	179, 409
BstFNI	CGCG	2 cut(s)	81, 200
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	26, 512
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	2 cut(s)	23, 509
BstMCI	CGRYCG	2 cut(s)	54, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 144
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	259, 556
BstSCI	CCNGG	2 cut(s)	102, 234
BstSFI	CTRYAG	2 cut(s)	192, 594
BstUI	CGCG	2 cut(s)	81, 200
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	23, 509
BstYI	RGATCY	2 cut(s)	23, 509
BsuI	GTATCC	2 cut(s)	376, 413
BsuRI	GGCC	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	179, 409
Cac8I	GCNNGC	3 cut(s)	136, 261, 351
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	83, 362
Cfr42I	CCGCGG	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	256, 553
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	13, 30, 243
DpnI	GATC	2 cut(s)	25, 511
DpnII	GATC	2 cut(s)	23, 509
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	111, 317
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	259, 556
FaiI	YATR	7 cut(s)	257, 339, 411, 434, 554, 603, 616
FatI	CATG	2 cut(s)	255, 552
Fnu4HI	GCNGC	4 cut(s)	139, 198, 201, 580
FokI	GGATG	2 cut(s)	166, 416
Fsp4HI	GCNGC	4 cut(s)	139, 198, 201, 580
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	139, 198, 201, 580
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	104, 305
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	259, 556
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	2 cut(s)	104, 305
HphI	GGTGA	2 cut(s)	488, 532
Hpy188I	TCNGA	2 cut(s)	56, 503
Hpy188III	TCNNGA	2 cut(s)	305, 515
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	3 cut(s)	193, 388, 428
HpyCH4V	TGCA	4 cut(s)	134, 251, 263, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 144
HpyF3I	CTNAG	3 cut(s)	13, 30, 243
Hsp92II	CATG	2 cut(s)	259, 556
HspAI	GCGC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	304
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	23, 509
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	2 cut(s)	248, 591
MalI	GATC	2 cut(s)	25, 511
MboI	GATC	2 cut(s)	23, 509
MboII	GAAGA	5 cut(s)	89, 111, 174, 304, 323
MflI	RGATCY	2 cut(s)	23, 509
MluCI	AATT	3 cut(s)	264, 497, 619
MmeI	TCCRAC	2 cut(s)	34, 613
MnlI	CCTC	7 cut(s)	39, 48, 55, 161, 466, 511, 529
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	104, 305
MspR9I	CCNGG	2 cut(s)	104, 236
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	81, 200
MwoI	GCNNNNNNNGC	2 cut(s)	131, 144
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	23, 509
NlaIII	CATG	2 cut(s)	259, 556
NlaIV	GGNNCC	2 cut(s)	85, 364
NmeAIII	GCCGAG	1 cut(s)	136
NspI	RCATGY	2 cut(s)	259, 556
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	140, 199, 202, 581
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	85, 364
PspPI	GGNCC	2 cut(s)	83, 362
PsuI	RGATCY	2 cut(s)	23, 509
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SacII	CCGCGG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	139, 198, 201, 580
Sau3AI	GATC	2 cut(s)	23, 509
Sau96I	GGNCC	2 cut(s)	83, 362
ScrFI	CCNGG	2 cut(s)	104, 236
SfaNI	GCATC	2 cut(s)	248, 591
SfcI	CTRYAG	2 cut(s)	192, 594
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	264, 497, 619
SsiI	CCGC	5 cut(s)	81, 138, 141, 198, 200
StyD4I	CCNGG	2 cut(s)	102, 234
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	193, 388, 428
TaqI	TCGA	3 cut(s)	156, 290, 445
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	264, 497, 619
TauI	GCSGC	3 cut(s)	141, 200, 203
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	1 cut(s)	579
TspDTI	ATGAA	2 cut(s)	168, 456
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	497, 619
XceI	RCATGY	2 cut(s)	259, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.