AT5G13570

hydrolase m7G(5')pppN diphosphatase mRNA binding protein homodimerization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009616
Physical Location & Seq
Forward (+)
4367262 .. 4370429
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13570.1

Sequence Viewer

Length: 1122 bp
ATGTCGGGCCTCCATCGATCATCAAGTTCATCGAAGAACATCGGAAATTGCCTTCCCTCCAAAGAACTCCTTGATGATCTTTGCAGTCGATTTGTTTTGAATGTCCCTGAAGAAGATCAACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATAATGCTGTAGAGAATGATCCAAAGCTTAAGTCCCTGTCTTTGAAAGAGTTTACTTCGCTCTTATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGTGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTTCCCCGCGGAAAAAAGAGCAAGGATGAAGAAGACCATGCTTGTGCCATACGTGAGGTCTTAGAGGAAACTGGATTTGATGTCTCAAAGCTACTCAAGAGAGAAGAATATATAGAGTTTGTTTTCAGGCAGCAAAGAGTACGACTTTACATTGTTGCTGGGGTGACAGAAGATACAGTTTTTGCACCACTTACAAAGAAGGAAATCAGTGAAATCACATGGCATCGGCTTGATCATCTTCAGCCAGCAAGTAATGAGGTGATAACTCATGGAGTTTCTGGTCTCAAATTGTACATGGTGGCACCTTTCCTTTCGTCATTGAAGTCGTGGATATTAAAGCATCCTTCACCTGTAGCACGGAGACCTAACAAGCCCCTTAAAGCACTCTGCGTGTGGAATGCAAGGACTAGTGTTGGAGGGAACGGGACAGCAACAGTGGAAAGCCAAAATAGAAAGTCTGAACTCAGGACAACAACAATGGAAAGCAACAGTAGAAAGCCTGAACTCAAGAGAACAACAATGGAAAGCCACAGTACAAAGCCTGAACTCAGGAAAGGAACAATGGAAAGCCACAATACAACAGCAACAGTAGAAAGCCACAATACAAAGCCTGTAGTCGACCATTCTCAGGACATAAAACCTGGTGGCAGTTTCATAAACTTCAAGTTCAACCAGTCAGTTATCTTACAGGCGTTGGAATCTGGTAATTCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP2 NUDIX

Protein Analysis

373

Amino Acids

42.39

Weight (kDa)

8.06

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP2 PF05026 22 - 104 1.6e-29 Dcp2, box A domain
NUDIX PF00293 109 - 218 4.3e-15 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 366, 706
AccB7I CCANNNNNTGG 1 cut(s) 332
AccI GTMKAC 1 cut(s) 1023
AccII CGCG 1 cut(s) 414
AciI CCGC 2 cut(s) 412, 414
AclWI GGATC 2 cut(s) 188, 400
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 129, 629
AfaI GTAC 4 cut(s) 167, 546, 698, 940
AfiI CCNNNNNNNGG 2 cut(s) 332, 1033
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 6 cut(s) 100, 220, 244, 727, 1069, 1075
AhlI ACTAGT 1 cut(s) 812
AjnI CCWGG 2 cut(s) 345, 1045
AluBI AGCT 6 cut(s) 202, 249, 399, 405, 496, 1118
AluI AGCT 6 cut(s) 202, 249, 399, 405, 496, 1118
Alw26I GTCTC 5 cut(s) 256, 347, 493, 692, 760
AlwI GGATC 2 cut(s) 188, 400
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 4 cut(s) 388, 580, 676, 744
BanI GGYRCC 2 cut(s) 366, 706
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 547
BccI CCATC 2 cut(s) 21, 378
BciT130I CCWGG 2 cut(s) 347, 1047
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 5 cut(s) 256, 347, 493, 692, 760
BcuI ACTAGT 1 cut(s) 812
BfaI CTAG 1 cut(s) 813
BfmI CTRYAG 3 cut(s) 183, 756, 1017
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
Bme1390I CCNGG 2 cut(s) 347, 1047
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 368, 708
BmrFI CCNGG 2 cut(s) 347, 1047
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 637, 754
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 421
BpuEI CTTGAG 2 cut(s) 485, 896
Bsa29I ATCGAT 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 458
BsaI GGTCTC 3 cut(s) 256, 692, 760
BsaJI CCNNGG 1 cut(s) 412
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 1033
Bse1I ACTGG 4 cut(s) 326, 337, 481, 1078
BseBI CCWGG 2 cut(s) 347, 1047
BseCI ATCGAT 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 4 cut(s) 355, 389, 436, 745
BseLI CCNNNNNNNGG 2 cut(s) 332, 1033
BseMII CTCAG 3 cut(s) 883, 967, 1046
BseNI ACTGG 4 cut(s) 326, 337, 481, 1078
BseXI GCAGC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 2 cut(s) 366, 706
BshVI ATCGAT 1 cut(s) 16
BslFI GGGAC 3 cut(s) 89, 193, 844
BslI CCNNNNNNNGG 2 cut(s) 332, 1033
BsmAI GTCTC 5 cut(s) 256, 347, 493, 692, 760
BsmFI GGGAC 3 cut(s) 89, 193, 844
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 3 cut(s) 256, 692, 760
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 6 cut(s) 17, 76, 115, 193, 392, 637
BspACI CCGC 2 cut(s) 412, 414
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 3 cut(s) 882, 966, 1045
BspDI ATCGAT 1 cut(s) 16
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 2 cut(s) 368, 708
BspPI GGATC 2 cut(s) 188, 400
BspT107I GGYRCC 2 cut(s) 366, 706
BspTI CTTAAG 1 cut(s) 203
BspTNI GGTCTC 3 cut(s) 256, 692, 760
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 4 cut(s) 326, 337, 481, 1078
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 6 cut(s) 17, 76, 115, 193, 392, 637
Bst2UI CCWGG 2 cut(s) 347, 1047
Bst4CI ACNGT 6 cut(s) 123, 583, 841, 896, 938, 994
BstAFI CTTAAG 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 696
BstBAI YACGTR 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 4 cut(s) 466, 869, 953, 1032
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 4 cut(s) 355, 389, 436, 745
BstFNI CGCG 1 cut(s) 414
BstKTI GATC 6 cut(s) 20, 79, 118, 196, 395, 640
BstMAI GTCTC 5 cut(s) 256, 347, 493, 692, 760
BstMBI GATC 6 cut(s) 17, 76, 115, 193, 392, 637
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 2 cut(s) 347, 1047
BstSCI CCNGG 2 cut(s) 345, 1045
BstSFI CTRYAG 3 cut(s) 183, 756, 1017
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 1 cut(s) 444
Bsu15I ATCGAT 1 cut(s) 16
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 4 cut(s) 355, 389, 436, 745
BtsIMutI CAGTG 3 cut(s) 330, 619, 846
Cac8I GCNNGC 1 cut(s) 651
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 1045
Csp6I GTAC 4 cut(s) 166, 545, 697, 939
CviAII CATG 4 cut(s) 443, 624, 674, 700
CviQI GTAC 4 cut(s) 166, 545, 697, 939
DdeI CTNAG 4 cut(s) 466, 869, 953, 1032
DpnI GATC 6 cut(s) 19, 78, 117, 195, 394, 639
DpnII GATC 6 cut(s) 17, 76, 115, 193, 392, 637
DraI TTTAAA 1 cut(s) 295
Eco31I GGTCTC 3 cut(s) 256, 692, 760
Eco32I GATATC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 129, 629
EcoRII CCWGG 2 cut(s) 345, 1045
EcoRV GATATC 1 cut(s) 289
FaeI CATG 4 cut(s) 446, 627, 677, 703
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 3 cut(s) 89, 193, 844
FatI CATG 4 cut(s) 442, 623, 673, 699
FauI CCCGC 1 cut(s) 419
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 4 cut(s) 362, 396, 443, 732
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 1 cut(s) 813
GluI GCNGC 1 cut(s) 536
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 4 cut(s) 446, 627, 677, 703
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 1103
HphI GGTGA 4 cut(s) 388, 580, 676, 744
Hpy166II GTNNAC 2 cut(s) 228, 1024
Hpy188I TCNGA 2 cut(s) 44, 865
Hpy188III TCNNGA 6 cut(s) 130, 502, 871, 913, 955, 1034
Hpy8I GTNNAC 2 cut(s) 228, 1024
HpyAV CCTTC 4 cut(s) 62, 373, 598, 759
HpyCH4III ACNGT 6 cut(s) 123, 583, 841, 896, 938, 994
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 3 cut(s) 84, 590, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 4 cut(s) 466, 869, 953, 1032
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 4 cut(s) 446, 627, 677, 703
Ksp22I TGATCA 1 cut(s) 637
KspI CCGCGG 1 cut(s) 415
Kzo9I GATC 6 cut(s) 17, 76, 115, 193, 392, 637
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 2 cut(s) 637, 754
MabI ACCWGGT 1 cut(s) 1045
MaeI CTAG 1 cut(s) 813
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 3 cut(s) 271, 328, 568
MalI GATC 6 cut(s) 19, 78, 117, 195, 394, 639
MboI GATC 6 cut(s) 17, 76, 115, 193, 392, 637
MboII GAAGA 9 cut(s) 46, 122, 125, 185, 446, 449, 521, 587, 635
MluCI AATT 5 cut(s) 46, 135, 339, 692, 1111
MmeI TCCRAC 2 cut(s) 799, 1080
MnlI CCTC 6 cut(s) 20, 67, 454, 463, 655, 815
MseI TTAA 4 cut(s) 204, 294, 740, 783
MslI CAYNNNNRTG 2 cut(s) 282, 447
MspA1I CMGCKG 2 cut(s) 249, 414
MspCI CTTAAG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 347, 1047
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 2 cut(s) 347, 1047
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 411
NdeI CATATG 1 cut(s) 358
NdeII GATC 6 cut(s) 17, 76, 115, 193, 392, 637
NlaIII CATG 4 cut(s) 446, 627, 677, 703
NlaIV GGNNCC 2 cut(s) 368, 708
NmuCI GTSAC 2 cut(s) 328, 568
PctI GAATGC 1 cut(s) 808
PfeI GAWTC 1 cut(s) 1103
PflMI CCANNNNNTGG 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 1 cut(s) 537
Ppu21I YACGTR 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 345, 1045
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 2 cut(s) 345, 1045
PspN4I GGNNCC 2 cut(s) 368, 708
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 249
RsaI GTAC 4 cut(s) 167, 546, 698, 940
RsaNI GTAC 4 cut(s) 166, 545, 697, 939
RseI CAYNNNNRTG 2 cut(s) 282, 447
SacII CCGCGG 1 cut(s) 415
SalI GTCGAC 1 cut(s) 1022
SaqAI TTAA 4 cut(s) 204, 294, 740, 783
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 6 cut(s) 17, 76, 115, 193, 392, 637
Sau96I GGNCC 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 347, 1047
SexAI ACCWGGT 1 cut(s) 1045
SfaNI GCATC 2 cut(s) 637, 754
SfcI CTRYAG 3 cut(s) 183, 756, 1017
Sfr303I CCGCGG 1 cut(s) 415
SgrBI CCGCGG 1 cut(s) 415
SmiMI CAYNNNNRTG 2 cut(s) 282, 447
SmlI CTYRAG 3 cut(s) 203, 500, 911
SmoI CTYRAG 3 cut(s) 203, 500, 911
SpeI ACTAGT 1 cut(s) 812
Sse9I AATT 5 cut(s) 46, 135, 339, 692, 1111
SsiI CCGC 2 cut(s) 412, 414
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 2 cut(s) 345, 1045
TaaI ACNGT 6 cut(s) 123, 583, 841, 896, 938, 994
TaiI ACGT 1 cut(s) 460
TaqI TCGA 7 cut(s) 16, 32, 88, 129, 319, 395, 1023
TasI AATT 5 cut(s) 46, 135, 339, 692, 1111
TatI WGTACW 2 cut(s) 696, 938
TfiI GAWTC 1 cut(s) 1103
Tru1I TTAA 4 cut(s) 204, 294, 740, 783
Tru9I TTAA 4 cut(s) 204, 294, 740, 783
TscAI CASTG 3 cut(s) 337, 619, 846
TseFI GTSAC 2 cut(s) 328, 568
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 2 cut(s) 328, 568
TspDTI ATGAA 5 cut(s) 18, 186, 375, 447, 1048
TspGWI ACGGA 1 cut(s) 778
TspRI CASTG 3 cut(s) 337, 619, 846
Van91I CCANNNNNTGG 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 203
XapI RAATTY 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 1023
XspI CTAG 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.