Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009616

Physical Location & Seq

Genomic Coordinates Reverse (-)

23526184 .. 23529186

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGTTTTTGAAGTTGGGAAATGGAGGAAGGTTTCACTCTGCTATATTCCATAGGTTTCTTCATAACATTGTGTACTCTACAACGTGGCCGAATTTCTTGGTAGACTTGCTTGCATCAAAGTATTTCAAATTCTTCAAACTCTCGAGTGGCCAATTGGTGTTGAGTCTGAAATTGTTTACAAGTGACACTTTCCAATGCAAGTGGATGTGCTTTTCATCTTGGTCTAAAGATTATTTGAAGTTCCATTTAGATATTCTGAATAATAAATTCAATGTATTGGCTAATGCAATCATGCATCTTCTGTTGGAGCTCCTTGAACTAGTCACACTTCAGTGCAATCTACAAGAAGGCATGGAGGGAAATGCTGTTGCTAAAACCATGAAGAATGTTTCAAGAGGCATGGTTGTTCTTACAATTCCATTTACCGTGGGCTTTCGAAAGCTGTTGGACGAAGGTGAATGCAGCTGGATTGAAATTGAAGTTCTCTATCAAGATGATAGCCCTACCTTGTTAGATATCTACTCTTGTGCTCTGTTTTTAATCTATCGAGATAGAATGATATTGTTCATGTTGCTGAGACATTTGAGTTTTTATCTGGTAGCTGATCAGTTCTATGACATTCTGCACAAACACTGCGGAAAAGTAGAATCATTGCTGTGTGATCGAAACCCGAACTCTCCAGCAAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP2 NUDIX

Protein Analysis

231

Amino Acids

26.85

Weight (kDa)

7.07

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13570 AT5G13570
fragaria_vesca	FvH4_2g18840
malus_domestica	MD01G1108400.v1.1 MD07G1174600.v1.1
prunus_persica	Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1
pyrus_communis	pycom01g13540 pycom07g16890
rosa_chinensis	RchiOBHm_Chr6g0284661
rosa_laevigata	RLG00000012733
rosa_multiflora	Rmu_sc0004879.1_g000009
rosa_roxburghii	Rroxscaffold_7G00184530
rosa_rugosa	Rorug06G0164900 Rorug06G0165000
rosa_samantha	Rh6AG278100 Rh6BG278100 Rh6CG280400 Rh6DG273100
rosa_wichuraiana	Rw6G023860 Rw6G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	639
AcoI	YGGCCR	2 cut(s)	89, 151
AcsI	RAATTY	3 cut(s)	94, 131, 269
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	9 cut(s)	13, 130, 139, 241, 274, 320, 396, 476, 482
AhlI	ACTAGT	1 cut(s)	322
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	313, 445, 468, 605
AluI	AGCT	4 cut(s)	313, 445, 468, 605
Alw21I	GWGCWC	2 cut(s)	315, 535
Alw26I	GTCTC	1 cut(s)	574
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	89, 151
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	3 cut(s)	94, 131, 269
AsuHPI	GGTGA	1 cut(s)	470
AsuII	TTCGAA	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	315, 535
BbvI	GCAGC	1 cut(s)	477
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	574
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	125, 307
BpmI	CTGGAG	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	611
BshFI	GGCC	2 cut(s)	91, 153
BsiHKAI	GWGCWC	2 cut(s)	315, 535
BsiHKCI	CYCGRG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	91, 153
BsoBI	CYCGRG	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	315, 535
Bsp143I	GATC	2 cut(s)	607, 664
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	2 cut(s)	91, 153
BspCNI	CTCAG	1 cut(s)	570
BspT104I	TTCGAA	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	653
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	607, 664
Bst4CI	ACNGT	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	578
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	610, 667
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	2 cut(s)	607, 664
BstV1I	GCAGC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	91, 153
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	2 cut(s)	341, 634
Cac8I	GCNNGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	185, 220
CviAII	CATG	5 cut(s)	295, 355, 382, 403, 571
CviJI	RGCY	9 cut(s)	91, 153, 284, 313, 435, 445, 468, 504, 605
CviKI_1	RGCY	9 cut(s)	91, 153, 284, 313, 435, 445, 468, 504, 605
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	2 cut(s)	609, 666
DpnII	GATC	2 cut(s)	607, 664
EaeI	YGGCCR	2 cut(s)	89, 151
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	5 cut(s)	298, 358, 385, 406, 574
FaiI	YATR	9 cut(s)	47, 54, 66, 296, 356, 383, 404, 572, 618
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FatI	CATG	5 cut(s)	294, 354, 381, 402, 570
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	91, 153
Hin1II	CATG	5 cut(s)	298, 358, 385, 406, 574
HinfI	GANTC	2 cut(s)	166, 650
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	3 cut(s)	76, 106, 180
Hpy188I	TCNGA	2 cut(s)	171, 261
Hpy188III	TCNNGA	4 cut(s)	145, 396, 494, 551
Hpy8I	GTNNAC	3 cut(s)	76, 106, 180
HpyAV	CCTTC	3 cut(s)	24, 344, 449
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	7 cut(s)	116, 201, 290, 298, 339, 465, 628
HpyF3I	CTNAG	1 cut(s)	578
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	5 cut(s)	298, 358, 385, 406, 574
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	607, 664
LmnI	GCTCC	2 cut(s)	310, 318
LpnPI	CCDG	2 cut(s)	454, 584
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	2 cut(s)	125, 307
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	185, 325
MalI	GATC	2 cut(s)	609, 666
MboI	GATC	2 cut(s)	607, 664
MboII	GAAGA	4 cut(s)	53, 127, 293, 397
MfeI	CAATTG	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	315, 535
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	8 cut(s)	94, 131, 155, 173, 269, 417, 477, 691
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	2 cut(s)	288, 429
MnlI	CCTC	3 cut(s)	20, 352, 392
Mox20I	TGGCCA	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	2 cut(s)	334, 658
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	468
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	467
NdeII	GATC	2 cut(s)	607, 664
NlaIII	CATG	5 cut(s)	298, 358, 385, 406, 574
NmuCI	GTSAC	2 cut(s)	185, 325
NsiI	ATGCAT	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	439
OliI	CACNNNNGTG	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	145
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	650
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	468
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	2 cut(s)	334, 658
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	2 cut(s)	607, 664
SchI	GAGTC	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	315, 535
SetI	ASST	9 cut(s)	35, 59, 89, 315, 447, 460, 470, 512, 607
SfaNI	GCATC	2 cut(s)	125, 307
Sfr274I	CTCGAG	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	439
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	334, 658
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	8 cut(s)	94, 131, 155, 173, 269, 417, 477, 691
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	4 cut(s)	146, 439, 550, 667
TasI	AATT	8 cut(s)	94, 131, 155, 173, 269, 417, 477, 691
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	2 cut(s)	341, 641
TseFI	GTSAC	2 cut(s)	185, 325
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	2 cut(s)	185, 325
TspDTI	ATGAA	4 cut(s)	53, 207, 398, 559
TspRI	CASTG	2 cut(s)	341, 641
XapI	RAATTY	3 cut(s)	94, 131, 269
XhoI	CTCGAG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.