Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009616

Physical Location & Seq

Genomic Coordinates Reverse (-)

47269388 .. 47275910

Gene Structure 6523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG278100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCTGGCCTTCCCCGGTCTTCAAGTGCTCCGCTAAAGAATGGCCTTCCTCCCCAGGAACTCCTCGATGATCTCTGCAGTCGGTTTGTTCTAAACGTTCCAAAAGAAGACCTACAATCATTTGAGCGGATTTTATTTCTTGTGGAGTATGCTCATTGGTTTTATGAAGACAACTCAGTTGAGAAAAATCCATCGCTGAAGTCATTTAATTTGAAGGAGTTTACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAAACCTTATGTTGCCCATATAGACGACATATTTAAGGACTTCACTTCTTACAAGGTTAAGGTTCCTGTAACTGGAGCAATCATTTTGGATGAAACCTATGAAAGGTGCATACTAGTGAAGGGATGGAAAGGATCAAGCTGGAGTTTTCCTCGTGGCAAAAAGAACAAAGACGAGGAAGACCATGCATGTGCCATCAGAGAAGTCCATGAAGAAACAGGATTTGATGTTACTAAACTTCTTAAAATAGATGATTACATTGAAGTTATATTTGGACAGCAAAGGGTGCGACTCTACATTATTGCAGGTGTAAGGGAAGATACAGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGTATGTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP2 NUDIX

Protein Analysis

207

Amino Acids

23.73

Weight (kDa)

5.34

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP2	PF05026	20 - 102	1.4e-30	Dcp2, box A domain
NUDIX	PF00293	107 - 201	4.6e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13570 AT5G13570
fragaria_vesca	FvH4_2g18840
malus_domestica	MD01G1108400.v1.1 MD07G1174600.v1.1
prunus_persica	Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1
pyrus_communis	pycom01g13540 pycom07g16890
rosa_chinensis	RchiOBHm_Chr6g0284661
rosa_laevigata	RLG00000012733
rosa_multiflora	Rmu_sc0004879.1_g000009
rosa_roxburghii	Rroxscaffold_7G00184530
rosa_rugosa	Rorug06G0164900 Rorug06G0165000
rosa_samantha	Rh6AG278100 Rh6BG278100 Rh6CG280400 Rh6DG273100
rosa_wichuraiana	Rw6G023860 Rw6G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
AccBSI	CCGCTC	1 cut(s)	127
AciI	CCGC	2 cut(s)	32, 127
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	326, 357
AgsI	TTSAA	3 cut(s)	24, 214, 515
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	2 cut(s)	243, 393
AluI	AGCT	2 cut(s)	243, 393
Alw21I	GWGCWC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	7, 43
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	583
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	4 cut(s)	12, 114, 174, 438
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	3 cut(s)	199, 372, 455
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	16
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	16, 56
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	16, 56
BpiI	GAAGAC	4 cut(s)	12, 114, 174, 438
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	2 cut(s)	348, 415
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	14, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 357
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	14, 54
BseGI	GGATG	2 cut(s)	349, 383
BseLI	CCNNNNNNNGG	2 cut(s)	326, 357
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	9, 45
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	326, 357
BsnI	GGCC	2 cut(s)	9, 45
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	70, 386, 603
BspACI	CCGC	2 cut(s)	32, 127
BspANI	GGCC	2 cut(s)	9, 45
BspCNI	CTCAG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	1 cut(s)	394
BsrBI	CCGCTC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	14, 54
BssMI	GATC	3 cut(s)	70, 386, 603
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	349, 383
BstKTI	GATC	3 cut(s)	73, 389, 606
BstMBI	GATC	3 cut(s)	70, 386, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	14, 54
BstSFI	CTRYAG	1 cut(s)	76
BstV2I	GAAGAC	4 cut(s)	12, 114, 174, 438
BsuRI	GGCC	2 cut(s)	9, 45
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	349, 383
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	548
CviAII	CATG	3 cut(s)	437, 441, 461
CviJI	RGCY	5 cut(s)	9, 45, 243, 393, 578
CviKI_1	RGCY	5 cut(s)	9, 45, 243, 393, 578
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	3 cut(s)	72, 388, 605
DpnII	GATC	3 cut(s)	70, 386, 603
Eco57I	CTGAAG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	3 cut(s)	440, 444, 464
FatI	CATG	3 cut(s)	436, 440, 460
FokI	GGATG	2 cut(s)	356, 390
FspBI	CTAG	1 cut(s)	368
GsuI	CTGGAG	2 cut(s)	348, 415
HaeIII	GGCC	2 cut(s)	9, 45
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	3 cut(s)	440, 444, 464
HinfI	GANTC	2 cut(s)	543, 617
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	4 cut(s)	20, 56, 208, 367
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	78, 363, 440, 557, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	440, 444, 464
Kzo9I	GATC	3 cut(s)	70, 386, 603
LmnI	GCTCC	2 cut(s)	34, 329
LpnPI	CCDG	8 cut(s)	29, 41, 68, 312, 333, 379, 456, 543
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	322, 481
MalI	GATC	3 cut(s)	72, 388, 605
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	3 cut(s)	70, 386, 603
MboII	GAAGA	6 cut(s)	12, 119, 179, 443, 476, 581
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	537
MnlI	CCTC	4 cut(s)	60, 74, 414, 421
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 622
MslI	CAYNNNNRTG	2 cut(s)	368, 441
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	16, 56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	538
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	70, 386, 603
NlaIII	CATG	3 cut(s)	440, 444, 464
NlaIV	GGNNCC	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	617
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Psp1406I	AACGTT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	318
PstI	CTGCAG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	243
RseI	CAYNNNNRTG	2 cut(s)	368, 441
SaqAI	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 622
Sau3AI	GATC	3 cut(s)	70, 386, 603
SchI	GAGTC	1 cut(s)	537
ScrFI	CCNGG	2 cut(s)	16, 56
SduI	GDGCHC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	368, 441
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	2 cut(s)	32, 127
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	14, 54
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 622
Tru9I	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 622
TscAI	CASTG	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	180, 360, 369, 477
TspRI	CASTG	1 cut(s)	613
XagI	CCTNNNNNAGG	1 cut(s)	355
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.