Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009616

Physical Location & Seq

Genomic Coordinates Reverse (-)

45825378 .. 45832312

Gene Structure 6935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG280400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTGGCCTTCCCCGGTCTTCAAGTGCTCCGCTAAAGAATGGCCTTCCTCCCCAGGAACTCCTCGATGATCTCTGCAGTCGGTTTGTTCTAAACGTTCCAAAAGAAGACCTACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCTCATTGGTTTTATGAAGACAACTCAGTGGAGAAAAATCCATCGCTGAAGTCATTTAATTTGAAGGAGTTTACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAAACCTTATGTTGCCCATATAGACGACATATTTAAGGACTTCACTTCTTACAAGGTTAAGGTTCCTGTAACTGGAGCAATCATTTTGGATGAAACCTATGAAAGGTGCATACTAGTGAAGGGATGGAAAGGATCAAGCTGGAGTTTTCCTCGTGGCAAAAAGAACAAAGACGAGGAAGACCATGCATGTGCCATCAGAGAAGTCCATGAAGAAACAGGATTTGATGTTACTAAACTTCTTAAAATAGATGATTACATTGAAGTTATATTTGGACAACAAAGGGTGCGACTCTACATTATTGCTGGTGTAAGGGAAGATACAGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATTGCATGGCATCGGCTGGATGATCTTCAGCCAGCAAGTGATGATGTGATATCCCGTGGTATCACCGGCCTCAAGCTTTACATGGTGTCACCTTTTCTGGCATCGTTGAAGTCATGGATCTTTAAACATCAGCCCCCAACTGCTCCAAGACCTGATATGCCTCTGAGAGGAATCAGTGTGTGGAGAGCAAAAAACAGCTCAATAGGGAGTAGCAACATGATAATGGAGAGCCAATCAACTAAACCTGAGCTTGATGTCCATCCTCCTGACATAGGACCTGGCAAGAGCTTCAGAAACTTCAGGTTCAATACTGCTCCAATCTTACAAGCAATGGAAGCTGGTTTCTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP2 NUDIX

Protein Analysis

321

Amino Acids

36.42

Weight (kDa)

6.2

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP2	PF05026	20 - 102	3.5e-30	Dcp2, box A domain
NUDIX	PF00293	107 - 219	2.1e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13570 AT5G13570
fragaria_vesca	FvH4_2g18840
malus_domestica	MD01G1108400.v1.1 MD07G1174600.v1.1
prunus_persica	Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1
pyrus_communis	pycom01g13540 pycom07g16890
rosa_chinensis	RchiOBHm_Chr6g0284661
rosa_laevigata	RLG00000012733
rosa_multiflora	Rmu_sc0004879.1_g000009
rosa_roxburghii	Rroxscaffold_7G00184530
rosa_rugosa	Rorug06G0164900 Rorug06G0165000
rosa_samantha	Rh6AG278100 Rh6BG278100 Rh6CG280400 Rh6DG273100
rosa_wichuraiana	Rw6G023860 Rw6G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	2 cut(s)	394, 737
AcuI	CTGAAG	4 cut(s)	218, 623, 886, 895
AfiI	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
AgsI	TTSAA	5 cut(s)	24, 214, 515, 721, 919
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	54, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	7 cut(s)	243, 393, 688, 810, 862, 900, 950
AluI	AGCT	7 cut(s)	243, 393, 688, 810, 862, 900, 950
Alw21I	GWGCWC	1 cut(s)	31
AlwI	GGATC	2 cut(s)	394, 737
AoxI	GGCC	3 cut(s)	7, 43, 679
AspS9I	GGNCC	1 cut(s)	887
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	583, 667, 693
AvaII	GGWCC	1 cut(s)	887
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	4 cut(s)	12, 114, 174, 438
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	4 cut(s)	199, 372, 455, 879
BciT130I	CCWGG	2 cut(s)	56, 891
BcnI	CCSGG	1 cut(s)	16
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	16, 56, 891
Bme18I	GGWCC	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	3 cut(s)	16, 56, 891
BmsI	GCATC	2 cut(s)	631, 722
BpiI	GAAGAC	4 cut(s)	12, 114, 174, 438
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	2 cut(s)	348, 415
Bpu10I	CCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	3 cut(s)	14, 54, 667
Bsc4I	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	948
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	56, 891
BseDI	CCNNGG	3 cut(s)	14, 54, 667
BseGI	GGATG	4 cut(s)	349, 383, 637, 871
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	3 cut(s)	189, 767, 849
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	9, 45, 681
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	16, 678
BslI	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
BsnI	GGCC	3 cut(s)	9, 45, 681
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	70, 386, 603, 634, 729
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	9, 45, 681
BspCNI	CTCAG	3 cut(s)	188, 768, 850
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	2 cut(s)	394, 737
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	14, 54, 667
BssMI	GATC	5 cut(s)	70, 386, 603, 634, 729
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	56, 891
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	3 cut(s)	175, 776, 858
BstDSI	CCRYGG	1 cut(s)	667
BstENI	CCTNNNNNAGG	3 cut(s)	355, 777, 882
BstF5I	GGATG	4 cut(s)	349, 383, 637, 871
BstKTI	GATC	5 cut(s)	73, 389, 606, 637, 732
BstMBI	GATC	5 cut(s)	70, 386, 603, 634, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	947
BstNI	CCWGG	2 cut(s)	56, 891
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	3 cut(s)	14, 54, 889
BstSFI	CTRYAG	1 cut(s)	76
BstV2I	GAAGAC	4 cut(s)	12, 114, 174, 438
BstX2I	RGATCY	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	729
BsuRI	GGCC	3 cut(s)	9, 45, 681
BtgI	CCRYGG	1 cut(s)	667
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	4 cut(s)	349, 383, 637, 871
BtsIMutI	CAGTG	3 cut(s)	183, 613, 793
Cac8I	GCNNGC	1 cut(s)	645
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	887
CviAII	CATG	7 cut(s)	437, 441, 461, 618, 694, 726, 829
DdeI	CTNAG	3 cut(s)	175, 776, 858
DpnI	GATC	5 cut(s)	72, 388, 605, 636, 731
DpnII	GATC	5 cut(s)	70, 386, 603, 634, 729
DraI	TTTAAA	1 cut(s)	736
Eco32I	GATATC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	887
Eco57I	CTGAAG	4 cut(s)	218, 623, 886, 895
EcoNI	CCTNNNNNAGG	3 cut(s)	355, 777, 882
EcoO109I	RGGNCCY	1 cut(s)	887
EcoRII	CCWGG	2 cut(s)	54, 889
EcoRV	GATATC	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
FatI	CATG	7 cut(s)	436, 440, 460, 617, 693, 725, 828
FokI	GGATG	4 cut(s)	356, 390, 644, 858
FspBI	CTAG	1 cut(s)	368
GsuI	CTGGAG	2 cut(s)	348, 415
HaeIII	GGCC	3 cut(s)	9, 45, 681
HapII	CCGG	2 cut(s)	16, 678
Hin1II	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	2 cut(s)	543, 783
HpaII	CCGG	2 cut(s)	16, 678
HphI	GGTGA	3 cut(s)	583, 667, 693
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	452, 777, 905
Hpy188III	TCNNGA	1 cut(s)	878
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	4 cut(s)	20, 56, 208, 367
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	78, 363, 440, 584, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	947
HpyF3I	CTNAG	3 cut(s)	175, 776, 858
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
Kzo9I	GATC	5 cut(s)	70, 386, 603, 634, 729
LmnI	GCTCC	4 cut(s)	34, 329, 760, 931
LweI	GCATC	2 cut(s)	631, 722
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	322, 481, 699
MalI	GATC	5 cut(s)	72, 388, 605, 636, 731
MboI	GATC	5 cut(s)	70, 386, 603, 634, 729
MboII	GAAGA	7 cut(s)	12, 119, 179, 443, 476, 581, 629
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	208, 612
MlyI	GAGTC	1 cut(s)	537
MnlI	CCTC	9 cut(s)	60, 74, 120, 414, 421, 692, 773, 783, 885
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
MslI	CAYNNNNRTG	3 cut(s)	368, 441, 833
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	16, 678
MspR9I	CCNGG	3 cut(s)	16, 56, 891
MvaI	CCWGG	2 cut(s)	56, 891
MwoI	GCNNNNNNNGC	1 cut(s)	947
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	5 cut(s)	70, 386, 603, 634, 729
NlaIII	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	783
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
PpuMI	RGGWCCY	1 cut(s)	887
Psp1406I	AACGTT	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	887
Psp6I	CCWGG	2 cut(s)	54, 889
PspGI	CCWGG	2 cut(s)	54, 889
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	887
PspPPI	RGGWCCY	1 cut(s)	887
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	729
PvuII	CAGCTG	1 cut(s)	243
RseI	CAYNNNNRTG	3 cut(s)	368, 441, 833
SaqAI	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
Sau3AI	GATC	5 cut(s)	70, 386, 603, 634, 729
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	1 cut(s)	537
ScrFI	CCNGG	3 cut(s)	16, 56, 891
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	631, 722
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	3 cut(s)	368, 441, 833
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	2 cut(s)	208, 612
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	3 cut(s)	14, 54, 889
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	208, 612
TfiI	GAWTC	1 cut(s)	783
Tru1I	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
Tru9I	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
TscAI	CASTG	3 cut(s)	183, 613, 793
TseFI	GTSAC	1 cut(s)	699
Tsp45I	GTSAC	1 cut(s)	699
TspDTI	ATGAA	4 cut(s)	180, 360, 369, 477
TspRI	CASTG	3 cut(s)	183, 613, 793
VpaK11BI	GGWCC	1 cut(s)	887
XagI	CCTNNNNNAGG	3 cut(s)	355, 777, 882
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.