Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009616

Physical Location & Seq

Genomic Coordinates Forward (+)

22128928 .. 22133654

Gene Structure 4727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1108400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCTGGCCTCCCTCGGTCATCGAGTGCTTTACTGAAGAACGGCCTTCCCCCACAAGAACTCCTTGATGATCTCTGCAGTCGGTTTGTTCTAAATGTGCCAAAAGAAGACCTGCAATCATTTGAGAGGATTTTATTTCTCGTGGAGTATGCTCATTGGTTTTATGAGGACAACTCAGTGGAGAAAAATCCATCGCTGAAGTCATTTAGTTTGAAGGAGTTCACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAGACCTTACGTTGCCCATATAGATGACATATTTAAGGACTTCACTTCTTACAAGGTCAAGGTTCCTGTAACTGGCGCAATCATTTTGGATGAAACCTTTGAAAGGTGCTTACTCGTGAAGGGTTGGAAAGGGTCAAGCTGGAGTTTCCCTCGTGGCAAAAAGAACAAAGATGAAGAAGACCATGCATGTGCCATCAGAGAAGTCCTGGAAGAAACAGGTTTTGATGTTACAAATCTTCTTGACAAAGACGAGTATATTGAAGTTATATTTGGACAACAAAGGGTGCGGCTGTACATTATTGCTGGTGTGAGGGAGGATACTGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATTGCATGGCACCGGCTGGATGATCTTCAGCCTGCAAGTGATGATGTGATATCTCGTGGTATCACCGGCCTCAAGCTTTACATGGTGTCACCTTTTCTAGCAACAATGAAATCATGGATTTTATCACATCAGTCCCCAGTTGCTCCAAGACCTGATATGCCTCTCAAAGGAATCAGCGTGTGGAATACAAAAAGCAGCTCGATAGGGAGTAGCACCATGATAGTGGAGAGCCAACCAACTAAACCTGAACCCGAGGTTCGTCCTCCAGACACAGGAGCAGGCAACAGTTTCAGAAACTTCAGGTTTGACGTAGCTCCAGTCTTGCAAGCAATTGATGCTGGTTTCCGTTCTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP2 NUDIX

Protein Analysis

324

Amino Acids

36.47

Weight (kDa)

5.42

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP2	PF05026	20 - 102	3.9e-30	Dcp2, box A domain
NUDIX	PF00293	107 - 219	1.3e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13570 AT5G13570
fragaria_vesca	FvH4_2g18840
malus_domestica	MD01G1108400.v1.1 MD07G1174600.v1.1
prunus_persica	Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1
pyrus_communis	pycom01g13540 pycom07g16890
rosa_chinensis	RchiOBHm_Chr6g0284661
rosa_laevigata	RLG00000012733
rosa_multiflora	Rmu_sc0004879.1_g000009
rosa_roxburghii	Rroxscaffold_7G00184530
rosa_rugosa	Rorug06G0164900 Rorug06G0165000
rosa_samantha	Rh6AG278100 Rh6BG278100 Rh6CG280400 Rh6DG273100
rosa_wichuraiana	Rw6G023860 Rw6G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	621
AciI	CCGC	1 cut(s)	541
AcuI	CTGAAG	4 cut(s)	56, 218, 623, 895
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
AgsI	TTSAA	3 cut(s)	214, 356, 515
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	5 cut(s)	243, 393, 688, 810, 926
AluI	AGCT	5 cut(s)	243, 393, 688, 810, 926
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	3 cut(s)	7, 43, 679
ApeKI	GCWGC	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	583, 667, 693
AvaI	CYCGRG	1 cut(s)	863
BanI	GGYRCC	1 cut(s)	621
BauI	CACGAG	4 cut(s)	140, 368, 405, 666
BbsI	GAAGAC	2 cut(s)	114, 438
BbvI	GCAGC	1 cut(s)	819
BccI	CCATC	2 cut(s)	199, 455
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	461
BciVI	GTATCC	1 cut(s)	565
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	2 cut(s)	542, 808
BlsI	GCNGC	2 cut(s)	543, 809
Bme1390I	CCNGG	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	863
BmiI	GGNNCC	2 cut(s)	318, 623
BmrFI	CCNGG	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	743
BmsI	GCATC	1 cut(s)	937
BmuI	ACTGGG	1 cut(s)	743
BpiI	GAAGAC	2 cut(s)	114, 438
BplI	GAGNNNNNCTC	4 cut(s)	158, 190, 388, 420
BpmI	CTGGAG	3 cut(s)	415, 861, 912
BpuEI	CTTGAG	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	14, 864
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
Bse118I	RCCGGY	2 cut(s)	624, 677
Bse1I	ACTGG	3 cut(s)	331, 749, 929
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	14, 864
BseGI	GGATG	2 cut(s)	349, 637
BseLI	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	331, 749, 929
BseXI	GCAGC	1 cut(s)	819
BshFI	GGCC	3 cut(s)	9, 45, 681
BshNI	GGYRCC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	2 cut(s)	625, 678
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	4 cut(s)	326, 357, 779, 884
BsmFI	GGGAC	1 cut(s)	730
BsnI	GGCC	3 cut(s)	9, 45, 681
BsoBI	CYCGRG	1 cut(s)	863
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	70, 603, 634
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	3 cut(s)	9, 45, 681
BspCNI	CTCAG	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	318, 623
BspMAI	CTGCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	621
BsrFI	RCCGGY	2 cut(s)	624, 677
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	331, 749, 929
BssAI	RCCGGY	2 cut(s)	624, 677
BssECI	CCNNGG	2 cut(s)	14, 864
BssMI	GATC	3 cut(s)	70, 603, 634
BssSI	CACGAG	4 cut(s)	140, 368, 405, 666
Bst2BI	CACGAG	4 cut(s)	140, 368, 405, 666
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	899
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	645, 892, 939
BstDEI	CTNAG	2 cut(s)	175, 254
BstENI	CCTNNNNNAGG	2 cut(s)	355, 777
BstF5I	GGATG	2 cut(s)	349, 637
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	73, 606, 637
BstMBI	GATC	3 cut(s)	70, 603, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	947
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	819
BstV2I	GAAGAC	2 cut(s)	114, 438
BstXI	CCANNNNNNTGG	1 cut(s)	835
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	3 cut(s)	9, 45, 681
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	349, 637
BtsIMutI	CAGTG	2 cut(s)	183, 613
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	3 cut(s)	645, 892, 939
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	624, 677
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	6 cut(s)	437, 441, 618, 694, 726, 829
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	2 cut(s)	175, 254
DpnI	GATC	3 cut(s)	72, 605, 636
DpnII	GATC	3 cut(s)	70, 603, 634
Eco32I	GATATC	1 cut(s)	663
Eco57I	CTGAAG	4 cut(s)	56, 218, 623, 895
Eco88I	CYCGRG	1 cut(s)	863
EcoNI	CCTNNNNNAGG	2 cut(s)	355, 777
EcoRII	CCWGG	1 cut(s)	459
EcoRV	GATATC	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	6 cut(s)	440, 444, 621, 697, 729, 832
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	6 cut(s)	436, 440, 617, 693, 725, 828
Fnu4HI	GCNGC	2 cut(s)	542, 808
FokI	GGATG	2 cut(s)	356, 644
Fsp4HI	GCNGC	2 cut(s)	542, 808
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	2 cut(s)	542, 808
GsuI	CTGGAG	3 cut(s)	415, 861, 912
HaeIII	GGCC	3 cut(s)	9, 45, 681
HapII	CCGG	2 cut(s)	625, 678
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	6 cut(s)	440, 444, 621, 697, 729, 832
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	1 cut(s)	783
HpaII	CCGG	2 cut(s)	625, 678
HphI	GGTGA	3 cut(s)	583, 667, 693
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	452, 905
Hpy188III	TCNNGA	3 cut(s)	370, 494, 878
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	56, 208, 367
HpyCH4III	ACNGT	1 cut(s)	899
HpyCH4IV	ACGT	2 cut(s)	264, 921
HpyCH4V	TGCA	7 cut(s)	78, 115, 440, 584, 617, 647, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	947
HpyF3I	CTNAG	2 cut(s)	175, 254
HpySE526I	ACGT	2 cut(s)	264, 921
Hsp92II	CATG	6 cut(s)	440, 444, 621, 697, 729, 832
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	70, 603, 634
LmnI	GCTCC	3 cut(s)	760, 887, 931
Lsp1109I	GCAGC	1 cut(s)	819
LweI	GCATC	1 cut(s)	937
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	2 cut(s)	264, 921
MaeIII	GTNAC	3 cut(s)	322, 481, 699
MalI	GATC	3 cut(s)	72, 605, 636
MboI	GATC	3 cut(s)	70, 603, 634
MboII	GAAGA	7 cut(s)	49, 119, 440, 443, 476, 482, 629
MfeI	CAATTG	1 cut(s)	942
MluCI	AATT	2 cut(s)	612, 942
MmeI	TCCRAC	1 cut(s)	359
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	2 cut(s)	237, 288
MslI	CAYNNNNRTG	3 cut(s)	276, 441, 833
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	625, 678
MspR9I	CCNGG	1 cut(s)	461
MunI	CAATTG	1 cut(s)	942
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	947
NdeII	GATC	3 cut(s)	70, 603, 634
NlaIII	CATG	6 cut(s)	440, 444, 621, 697, 729, 832
NlaIV	GGNNCC	2 cut(s)	318, 623
NmuCI	GTSAC	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	783
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	543, 809
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	318, 623
PstI	CTGCAG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	3 cut(s)	276, 441, 833
SaqAI	TTAA	2 cut(s)	237, 288
SatI	GCNGC	2 cut(s)	542, 808
Sau3AI	GATC	3 cut(s)	70, 603, 634
ScrFI	CCNGG	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	937
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	3 cut(s)	276, 441, 833
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	2 cut(s)	612, 942
SsiI	CCGC	1 cut(s)	541
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	899
TaiI	ACGT	2 cut(s)	267, 924
TaqI	TCGA	2 cut(s)	23, 812
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	612, 942
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	783
Tru1I	TTAA	2 cut(s)	237, 288
Tru9I	TTAA	2 cut(s)	237, 288
TscAI	CASTG	2 cut(s)	183, 613
TseFI	GTSAC	1 cut(s)	699
TseI	GCWGC	1 cut(s)	807
Tsp45I	GTSAC	1 cut(s)	699
TspDTI	ATGAA	3 cut(s)	360, 441, 734
TspGWI	ACGGA	1 cut(s)	947
TspRI	CASTG	2 cut(s)	183, 613
XagI	CCTNNNNNAGG	2 cut(s)	355, 777
XceI	RCATGY	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	710
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.