FvH4_2g18840

mRNA-decapping enzyme subunit 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009616
Physical Location & Seq
Reverse (-)
16060589 .. 16065720
5132 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18840.t1

Sequence Viewer

Length: 963 bp
ATGTCTGGCCTTCCCCGGTCTTCAAGTGCTCCGCTAAAGAATGGGCTTCCTCCCCAGGAGCTCCTCGATGATCTCTGCAGTCGGTTTGTTCTAAATGTGCCAAAAGAAGACCTGCAATCATTTGAGAGGATCTTATTTCTCGTGGAGTATGCTCATTGGTTTTATGAAGACAACTCGGTGGAGAAAAATCCATCGCTCAAGTCATTTAATCTCAAGGAGTTTACTTCTCTATTGTTTAACAGCTGCGATGTTCTTAAACCTTATGTTGCCCATATAGACGACATATTTAAGGACTTCACTTCGTACAAGGTTAAGGTTCCTGTAACTGGAGCAATCATTCTGGATGAAACTTATGAAAGGTGCATACTAGTGAAGGGCTGGAAAGGATCAAGCTGGAGTTTTCCTCGTGGGAAAAAGAATAAAGATGAAGAAGACCATGCATGTGCCATCAGAGAGGTCCTTGAAGAAACAGGCTTTGATGTTACTAAACTTCTTAACATAGATGATTACATTGAAGTTATATTTGGACAGCAAAGGGTGCGACTCTACATTGTTGCCGGTGTAAGGGAGGATACAGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATCGCATGGCATCGGCTGGATGATCTTCAGCCAGCAAGTAACGATGTGATATCCCGTGGCATCACCGGCCTCAAGCTTTACATGGTGTCCCCTTTTCTGGCATCGTTGAAGTCATGGATCTTTAAACATCAACCCCCAAATGCCTCAAGACCTGATATGCCTCTGAGAGGACTCAGTGTGTGGAGAGCGAAAAACAGCTCAATTGGGAGTAGCAACATGATAATGGAGAGCCAATCAACTAAACCTGAACCTGAAGTCCATCCTCCTGAAAGAGCTGGAATGAGCTTCAGAAACTTCAGGTTCAATACTGCTTCAATCTTTCAACCAATGGAAGCTGGTTTCTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP2 NUDIX

Protein Analysis

321

Amino Acids

36.39

Weight (kDa)

6.13

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP2 PF05026 20 - 102 3.5e-30 Dcp2, box A domain
NUDIX PF00293 107 - 219 2.7e-15 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AciI CCGC 1 cut(s) 32
AclWI GGATC 3 cut(s) 137, 394, 737
AcuI CTGAAG 4 cut(s) 623, 883, 885, 892
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 4 cut(s) 326, 564, 709, 779
AgsI TTSAA 7 cut(s) 24, 464, 515, 721, 916, 927, 935
AhlI ACTAGT 1 cut(s) 367
AjnI CCWGG 1 cut(s) 54
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AloI GAACNNNNNNTCC 2 cut(s) 852, 884
AluBI AGCT 8 cut(s) 61, 243, 393, 688, 810, 887, 897, 947
AluI AGCT 8 cut(s) 61, 243, 393, 688, 810, 887, 897, 947
Alw21I GWGCWC 2 cut(s) 31, 63
AlwI GGATC 3 cut(s) 137, 394, 737
AoxI GGCC 2 cut(s) 7, 679
ApeKI GCWGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 457
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 583, 667
AvaII GGWCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 2 cut(s) 140, 405
BbsI GAAGAC 4 cut(s) 12, 114, 174, 438
Bbv12I GWGCWC 2 cut(s) 31, 63
BbvI GCAGC 1 cut(s) 230
BccI CCATC 3 cut(s) 199, 455, 879
BciT130I CCWGG 1 cut(s) 56
BciVI GTATCC 1 cut(s) 565
BcnI CCSGG 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 120
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 16, 56
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 2 cut(s) 16, 56
BmsI GCATC 3 cut(s) 631, 681, 722
BpiI GAAGAC 4 cut(s) 12, 114, 174, 438
BplI GAGNNNNNCTC 2 cut(s) 388, 420
BpmI CTGGAG 2 cut(s) 348, 415
BpuEI CTTGAG 4 cut(s) 182, 197, 668, 742
BpuMI CCSGG 1 cut(s) 16
BsaJI CCNNGG 3 cut(s) 14, 54, 667
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 564, 709, 779
Bse118I RCCGGY 2 cut(s) 557, 677
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 14, 54, 667
BseGI GGATG 3 cut(s) 349, 637, 871
BseLI CCNNNNNNNGG 4 cut(s) 326, 564, 709, 779
BseMII CTCAG 2 cut(s) 767, 799
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 2 cut(s) 9, 681
BsiHKAI GWGCWC 2 cut(s) 31, 63
BsiSI CCGG 3 cut(s) 16, 558, 678
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 4 cut(s) 326, 564, 709, 779
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 2 cut(s) 9, 681
Bsp1286I GDGCHC 2 cut(s) 31, 63
Bsp143I GATC 6 cut(s) 70, 129, 386, 603, 634, 729
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 9, 681
BspCNI CTCAG 2 cut(s) 768, 798
BspLI GGNNCC 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 3 cut(s) 137, 394, 737
BsrFI RCCGGY 2 cut(s) 557, 677
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 2 cut(s) 557, 677
BssECI CCNNGG 3 cut(s) 14, 54, 667
BssMI GATC 6 cut(s) 70, 129, 386, 603, 634, 729
BssSI CACGAG 2 cut(s) 140, 405
Bst2BI CACGAG 2 cut(s) 140, 405
Bst2UI CCWGG 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 2 cut(s) 776, 785
BstDSI CCRYGG 1 cut(s) 667
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 3 cut(s) 349, 637, 871
BstKTI GATC 6 cut(s) 73, 132, 389, 606, 637, 732
BstMBI GATC 6 cut(s) 70, 129, 386, 603, 634, 729
BstMWI GCNNNNNNNGC 2 cut(s) 538, 678
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 14, 54
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 4 cut(s) 12, 114, 174, 438
BstX2I RGATCY 2 cut(s) 129, 729
BstYI RGATCY 2 cut(s) 129, 729
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 2 cut(s) 9, 681
BtgI CCRYGG 1 cut(s) 667
BtgZI GCGATG 2 cut(s) 177, 261
BtsCI GGATG 3 cut(s) 349, 637, 871
BtsIMutI CAGTG 2 cut(s) 613, 793
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 645
Cfr10I RCCGGY 2 cut(s) 557, 677
Cfr13I GGNCC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 304
CviAII CATG 6 cut(s) 437, 441, 618, 694, 726, 829
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 776, 785
DpnI GATC 6 cut(s) 72, 131, 388, 605, 636, 731
DpnII GATC 6 cut(s) 70, 129, 386, 603, 634, 729
DraI TTTAAA 1 cut(s) 736
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 4 cut(s) 623, 883, 885, 892
EcoICRI GAGCTC 1 cut(s) 61
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 54
EcoRV GATATC 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 6 cut(s) 440, 444, 621, 697, 729, 832
FaqI GGGAC 1 cut(s) 685
FatI CATG 6 cut(s) 436, 440, 617, 693, 725, 828
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 3 cut(s) 356, 644, 858
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 368
GluI GCNGC 1 cut(s) 244
GsuI CTGGAG 2 cut(s) 348, 415
HaeIII GGCC 2 cut(s) 9, 681
HapII CCGG 3 cut(s) 16, 558, 678
Hin1II CATG 6 cut(s) 440, 444, 621, 697, 729, 832
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 2 cut(s) 543, 783
HpaII CCGG 3 cut(s) 16, 558, 678
HphI GGTGA 2 cut(s) 583, 667
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 3 cut(s) 452, 777, 902
Hpy188III TCNNGA 3 cut(s) 341, 759, 878
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 20, 367
HpyCH4V TGCA 5 cut(s) 78, 115, 363, 440, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 538, 678
HpyF3I CTNAG 2 cut(s) 776, 785
Hsp92II CATG 6 cut(s) 440, 444, 621, 697, 729, 832
Kzo9I GATC 6 cut(s) 70, 129, 386, 603, 634, 729
LmnI GCTCC 4 cut(s) 34, 58, 66, 329
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 3 cut(s) 631, 681, 722
MaeI CTAG 1 cut(s) 368
MaeIII GTNAC 3 cut(s) 322, 481, 650
MalI GATC 6 cut(s) 72, 131, 388, 605, 636, 731
MboI GATC 6 cut(s) 70, 129, 386, 603, 634, 729
MboII GAAGA 7 cut(s) 12, 119, 179, 440, 443, 476, 629
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 2 cut(s) 129, 729
MhlI GDGCHC 2 cut(s) 31, 63
MluCI AATT 1 cut(s) 813
MlyI GAGTC 2 cut(s) 537, 777
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 735
MslI CAYNNNNRTG 3 cut(s) 368, 441, 833
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 3 cut(s) 16, 558, 678
MspR9I CCNGG 2 cut(s) 16, 56
MunI CAATTG 1 cut(s) 813
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 538, 678
NciI CCSGG 1 cut(s) 16
NdeII GATC 6 cut(s) 70, 129, 386, 603, 634, 729
NlaIII CATG 6 cut(s) 440, 444, 621, 697, 729, 832
NlaIV GGNNCC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 444
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 2 cut(s) 537, 777
PpsI GAGTC 2 cut(s) 537, 777
PpuMI RGGWCCY 1 cut(s) 457
Psp124BI GAGCTC 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 457
PspPPI RGGWCCY 1 cut(s) 457
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 2 cut(s) 129, 729
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 3 cut(s) 368, 441, 833
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 735
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 6 cut(s) 70, 129, 386, 603, 634, 729
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 2 cut(s) 537, 777
ScrFI CCNGG 2 cut(s) 16, 56
SduI GDGCHC 2 cut(s) 31, 63
SfaNI GCATC 3 cut(s) 631, 681, 722
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 3 cut(s) 368, 441, 833
SmlI CTYRAG 4 cut(s) 197, 212, 683, 757
SmoI CTYRAG 4 cut(s) 197, 212, 683, 757
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 1 cut(s) 813
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 14, 54
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 813
Tru1I TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 735
Tru9I TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 735
TscAI CASTG 2 cut(s) 613, 793
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 4 cut(s) 180, 360, 369, 441
TspRI CASTG 2 cut(s) 613, 793
VpaK11BI GGWCC 1 cut(s) 457
XagI CCTNNNNNAGG 1 cut(s) 777
XceI RCATGY 1 cut(s) 444
XspI CTAG 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.