Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009616

Physical Location & Seq

Genomic Coordinates Reverse (-)

46518071 .. 46521600

Gene Structure 3530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCTGGCCTTCCCCGGTCTTCAAGTGCTCCGCTAAAGAATGGCCTTCCTCCCCAGGAACTCCTCGATGATCTCTGCAGTCGGTTTGTTCTAAACGTTCCAAAAGAAGACCTACAATCATTTGAGCGGATTTTATTTCTTGTGGAGTATGCTCATTGGTTTTATGAAGACAACTCAGTTGAGAAAAATCCATCGCTGAAGTCATTTAATTTGAAGGAGTTTACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAAACCTTATGTTGCCCATATAGACGACATATTTAAGGACTTCACTTCTTACAAGGTTAAGGTTCCTGTAACTGGAGCAATCATTTTGGATGAAACCTATGAAAGGTGCATATTAGTGAAGGGATGGAAAGGATCAAGCTGGAGTTTTCCTCGTGGCAAAAAGAACAAAGACGAGGAAGACCATGCATGTGCCATCAGAGAAGTCCATGAAGAAACAGGATTTGATGTTACTAAACTTCTTAAAATAGATGATTACATTGAAGTTATATTTGGACAGCAAAGGGTGCGACTCTACATTATTGCAGGTGTAAGGGAAGATACAGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATTGCATGGCATCGGCTGGATGATCTTCAGCCAGCAAGTGATGATGTGATATCCCGTGGTATCACCGGCCTCAAGCTTTACATGGTGTCACCTTTTCTGGCATCGTTGAAGTCATGGATCTTTAAACATCAGCCCCCAACTGCTCCAAGACCTGATATGCCTCTGAGAGGAATCAGTGTGTGGAGAGCAAAAAACAGCTCAATAGGGAGTAGCAACATGATAATGGAGAGCCAATCAACTAAACCTGAACCTGATGTAGCTAGCTTCAGAAACTTCAGGTTCAATACTGCTCCAATCTTACGGTTTCTCTGCTTGAATGCAACTTGCTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP2 NUDIX

Protein Analysis

315

Amino Acids

35.96

Weight (kDa)

6.61

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP2	PF05026	20 - 102	3.4e-30	Dcp2, box A domain
NUDIX	PF00293	107 - 219	2.1e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13570 AT5G13570
fragaria_vesca	FvH4_2g18840
malus_domestica	MD01G1108400.v1.1 MD07G1174600.v1.1
prunus_persica	Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1
pyrus_communis	pycom01g13540 pycom07g16890
rosa_chinensis	RchiOBHm_Chr6g0284661
rosa_laevigata	RLG00000012733
rosa_multiflora	Rmu_sc0004879.1_g000009
rosa_roxburghii	Rroxscaffold_7G00184530
rosa_rugosa	Rorug06G0164900 Rorug06G0165000
rosa_samantha	Rh6AG278100 Rh6BG278100 Rh6CG280400 Rh6DG273100
rosa_wichuraiana	Rw6G023860 Rw6G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
AccBSI	CCGCTC	1 cut(s)	127
AciI	CCGC	2 cut(s)	32, 127
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	2 cut(s)	394, 737
AcuI	CTGAAG	4 cut(s)	218, 623, 862, 871
AfiI	CCNNNNNNNGG	3 cut(s)	326, 357, 779
AgsI	TTSAA	6 cut(s)	24, 214, 515, 721, 895, 928
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	6 cut(s)	243, 393, 688, 810, 872, 876
AluI	AGCT	6 cut(s)	243, 393, 688, 810, 872, 876
Alw21I	GWGCWC	1 cut(s)	31
AlwI	GGATC	2 cut(s)	394, 737
AoxI	GGCC	3 cut(s)	7, 43, 679
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	583, 667, 693
AsuNHI	GCTAGC	1 cut(s)	872
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	4 cut(s)	12, 114, 174, 438
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	3 cut(s)	199, 372, 455
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	873
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	16, 56
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	16, 56
BmsI	GCATC	2 cut(s)	631, 722
BmtI	GCTAGC	1 cut(s)	876
BpiI	GAAGAC	4 cut(s)	12, 114, 174, 438
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	2 cut(s)	348, 415
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	14, 54, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 357, 779
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	14, 54, 667
BseGI	GGATG	3 cut(s)	349, 383, 637
BseLI	CCNNNNNNNGG	3 cut(s)	326, 357, 779
BseMII	CTCAG	2 cut(s)	189, 767
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	9, 45, 681
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	16, 678
BslI	CCNNNNNNNGG	3 cut(s)	326, 357, 779
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	3 cut(s)	9, 45, 681
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	70, 386, 603, 634, 729
BspACI	CCGC	2 cut(s)	32, 127
BspANI	GGCC	3 cut(s)	9, 45, 681
BspCNI	CTCAG	2 cut(s)	188, 768
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	548
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	2 cut(s)	394, 737
BsrBI	CCGCTC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	14, 54, 667
BssMI	GATC	5 cut(s)	70, 386, 603, 634, 729
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	915
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	645, 874
BstDEI	CTNAG	2 cut(s)	175, 776
BstDSI	CCRYGG	1 cut(s)	667
BstENI	CCTNNNNNAGG	2 cut(s)	355, 777
BstF5I	GGATG	3 cut(s)	349, 383, 637
BstKTI	GATC	5 cut(s)	73, 389, 606, 637, 732
BstMBI	GATC	5 cut(s)	70, 386, 603, 634, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	14, 54
BstSFI	CTRYAG	1 cut(s)	76
BstV2I	GAAGAC	4 cut(s)	12, 114, 174, 438
BstX2I	RGATCY	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	729
BsuRI	GGCC	3 cut(s)	9, 45, 681
BtgI	CCRYGG	1 cut(s)	667
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	349, 383, 637
BtsIMutI	CAGTG	2 cut(s)	613, 793
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	645, 874
Cfr10I	RCCGGY	1 cut(s)	677
CviAII	CATG	7 cut(s)	437, 441, 461, 618, 694, 726, 829
DdeI	CTNAG	2 cut(s)	175, 776
DpnI	GATC	5 cut(s)	72, 388, 605, 636, 731
DpnII	GATC	5 cut(s)	70, 386, 603, 634, 729
DraI	TTTAAA	1 cut(s)	736
Eco32I	GATATC	1 cut(s)	663
Eco57I	CTGAAG	4 cut(s)	218, 623, 862, 871
EcoNI	CCTNNNNNAGG	2 cut(s)	355, 777
EcoRII	CCWGG	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
FatI	CATG	7 cut(s)	436, 440, 460, 617, 693, 725, 828
FokI	GGATG	3 cut(s)	356, 390, 644
FspBI	CTAG	1 cut(s)	873
GsuI	CTGGAG	2 cut(s)	348, 415
HaeIII	GGCC	3 cut(s)	9, 45, 681
HapII	CCGG	2 cut(s)	16, 678
Hin1II	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	2 cut(s)	543, 783
HpaII	CCGG	2 cut(s)	16, 678
HphI	GGTGA	3 cut(s)	583, 667, 693
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	452, 777, 881
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	4 cut(s)	20, 56, 208, 367
HpyCH4III	ACNGT	1 cut(s)	915
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	7 cut(s)	78, 363, 440, 557, 584, 617, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	2 cut(s)	175, 776
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
Kzo9I	GATC	5 cut(s)	70, 386, 603, 634, 729
LmnI	GCTCC	4 cut(s)	34, 329, 760, 907
LweI	GCATC	2 cut(s)	631, 722
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	322, 481, 699
MalI	GATC	5 cut(s)	72, 388, 605, 636, 731
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	5 cut(s)	70, 386, 603, 634, 729
MboII	GAAGA	7 cut(s)	12, 119, 179, 443, 476, 581, 629
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	208, 612
MlyI	GAGTC	1 cut(s)	537
MnlI	CCTC	7 cut(s)	60, 74, 414, 421, 692, 773, 783
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
MslI	CAYNNNNRTG	3 cut(s)	368, 441, 833
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	16, 678
MspR9I	CCNGG	2 cut(s)	16, 56
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	538
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	5 cut(s)	70, 386, 603, 634, 729
NheI	GCTAGC	1 cut(s)	872
NlaIII	CATG	7 cut(s)	440, 444, 464, 621, 697, 729, 832
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	934
PfeI	GAWTC	1 cut(s)	783
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Psp1406I	AACGTT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	318
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	729
PvuII	CAGCTG	1 cut(s)	243
RseI	CAYNNNNRTG	3 cut(s)	368, 441, 833
SaqAI	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
Sau3AI	GATC	5 cut(s)	70, 386, 603, 634, 729
SchI	GAGTC	1 cut(s)	537
ScrFI	CCNGG	2 cut(s)	16, 56
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	631, 722
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	3 cut(s)	368, 441, 833
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	2 cut(s)	208, 612
SsiI	CCGC	2 cut(s)	32, 127
SspMI	CTAG	1 cut(s)	873
StyD4I	CCNGG	2 cut(s)	14, 54
TaaI	ACNGT	1 cut(s)	915
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	208, 612
TfiI	GAWTC	1 cut(s)	783
Tru1I	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
Tru9I	TTAA	7 cut(s)	207, 237, 255, 288, 312, 495, 735
TscAI	CASTG	2 cut(s)	613, 793
TseFI	GTSAC	1 cut(s)	699
Tsp45I	GTSAC	1 cut(s)	699
TspDTI	ATGAA	4 cut(s)	180, 360, 369, 477
TspRI	CASTG	2 cut(s)	613, 793
XagI	CCTNNNNNAGG	2 cut(s)	355, 777
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	1 cut(s)	873
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.