Rroxscaffold_7G00184530

mRNA-decapping enzyme subunit 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009616
Physical Location & Seq
Forward (+)
23721375 .. 23728074
6700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184530.1

Sequence Viewer

Length: 1005 bp
ATGCAGATCCAACAGAAAAGAAACCACCGGGAAGCCACCATGTCTGGCCTTCCCCGGTCTTCAAGTGCTCCGCTAAAGAATGGCCTTCCTCCCCAGGAACTCCTCGATGATCTCTGCAGTCGGTTTGTTCTAAACGTTCCAAAAGAAGACCTACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCTCATTGGTTTTATGAAGACAACTCAGTGGAGAAAAATCCATCGCTGAAGTCATTTAATTTGAAGGAGTTTACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAAACCTTATGTTGCCCATATAGACGACATATTTAAGGACTTCACTTCTTACAAGGTTAAGGTTCCTGTAACTGGAGCAATCATTTTGGATGAAACCTATGAAAGGTGCATACTAGTGAAGGGATGGAAAGGATCAAGCTGGAGTTTTCCTCGTGGCAAAAAGAACAAAGACGAGGAAGACCATGCATGTGCCATCAGAGAAGTCCATGAAGAAACAGGATTTGATGTTACTAAACTTCTTAAAATAGATGATTACATTGAAGTTATATTTGGACAGCAAAGGGTGCGACTCTACATTGTTGCTGGTGTAAGGGAAGATACAGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATTGCATGGCATCGGCTGGATGATCTTCAGCCAGCAAGTGATGATGTGATATCCCGTGGTATCACCGGCCTCAAGCTTTACATGGTGTCACCTTTTCTGGCATCGTTGAAGTCATGGATCTTTAAACATCAGCCCCCAACTGCTCCAAGACCTGATATGCCTCTGAGAGGAATCAGTGTGTGGAGAGCAAAAAACAGCTCAATAGGGAGTAGCAACATGATAATGGAGAGCCAATCAACTAAACCTGAGCCTGATGTCCATCCTCCTGACATAGGACCTGGCAAGAGCTTCAGAAACTTCAGGTTCAATACTGCTCCAATCTTACAAGCAATGGAAGCTGGTTTCTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP2 NUDIX

Protein Analysis

334

Amino Acids

38.01

Weight (kDa)

6.72

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP2 PF05026 33 - 115 3.8e-30 Dcp2, box A domain
NUDIX PF00293 120 - 232 1.7e-15 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AclI AACGTT 1 cut(s) 135
AclWI GGATC 2 cut(s) 433, 776
AcuI CTGAAG 4 cut(s) 257, 662, 925, 934
AfiI CCNNNNNNNGG 4 cut(s) 365, 396, 818, 923
AgsI TTSAA 5 cut(s) 63, 253, 554, 760, 958
AhlI ACTAGT 1 cut(s) 406
AjnI CCWGG 2 cut(s) 93, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AluBI AGCT 6 cut(s) 282, 432, 727, 849, 939, 989
AluI AGCT 6 cut(s) 282, 432, 727, 849, 939, 989
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 2 cut(s) 433, 776
AoxI GGCC 3 cut(s) 46, 82, 718
AspS9I GGNCC 1 cut(s) 926
AsuC2I CCSGG 2 cut(s) 29, 55
AsuHPI GGTGA 3 cut(s) 622, 706, 732
AvaII GGWCC 1 cut(s) 926
BauI CACGAG 1 cut(s) 444
BbsI GAAGAC 4 cut(s) 51, 153, 213, 477
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 4 cut(s) 238, 411, 494, 918
BciT130I CCWGG 2 cut(s) 95, 930
BcnI CCSGG 2 cut(s) 29, 55
BcuI ACTAGT 1 cut(s) 406
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 115
Bme1390I CCNGG 4 cut(s) 29, 55, 95, 930
Bme18I GGWCC 1 cut(s) 926
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 4 cut(s) 29, 55, 95, 930
BmsI GCATC 2 cut(s) 670, 761
BpiI GAAGAC 4 cut(s) 51, 153, 213, 477
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpmI CTGGAG 2 cut(s) 387, 454
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 707
BpuMI CCSGG 2 cut(s) 29, 55
BsaBI GATNNNNATC 1 cut(s) 909
BsaJI CCNNGG 3 cut(s) 53, 93, 706
Bsc4I CCNNNNNNNGG 4 cut(s) 365, 396, 818, 923
Bse118I RCCGGY 1 cut(s) 716
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 2 cut(s) 95, 930
BseDI CCNNGG 3 cut(s) 53, 93, 706
BseGI GGATG 4 cut(s) 388, 422, 676, 910
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 4 cut(s) 365, 396, 818, 923
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 3 cut(s) 228, 806, 888
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 92
BshFI GGCC 3 cut(s) 48, 84, 720
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 3 cut(s) 28, 55, 717
BslI CCNNNNNNNGG 4 cut(s) 365, 396, 818, 923
BsnI GGCC 3 cut(s) 48, 84, 720
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 6 cut(s) 6, 109, 425, 642, 673, 768
BspACI CCGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 48, 84, 720
BspCNI CTCAG 3 cut(s) 227, 807, 889
BspLI GGNNCC 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 2 cut(s) 433, 776
BsrDI GCAATG 1 cut(s) 987
BsrFI RCCGGY 1 cut(s) 716
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 716
BssECI CCNNGG 3 cut(s) 53, 93, 706
BssMI GATC 6 cut(s) 6, 109, 425, 642, 673, 768
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 95, 930
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 3 cut(s) 214, 815, 897
BstDSI CCRYGG 1 cut(s) 706
BstENI CCTNNNNNAGG 3 cut(s) 394, 816, 921
BstF5I GGATG 4 cut(s) 388, 422, 676, 910
BstKTI GATC 6 cut(s) 9, 112, 428, 645, 676, 771
BstMBI GATC 6 cut(s) 6, 109, 425, 642, 673, 768
BstMWI GCNNNNNNNGC 2 cut(s) 577, 986
BstNI CCWGG 2 cut(s) 95, 930
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 4 cut(s) 27, 53, 93, 928
BstSFI CTRYAG 1 cut(s) 115
BstV2I GAAGAC 4 cut(s) 51, 153, 213, 477
BstX2I RGATCY 2 cut(s) 6, 768
BstYI RGATCY 2 cut(s) 6, 768
BsuRI GGCC 3 cut(s) 48, 84, 720
BtgI CCRYGG 1 cut(s) 706
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 4 cut(s) 388, 422, 676, 910
BtsIMutI CAGTG 3 cut(s) 222, 652, 832
Cac8I GCNNGC 1 cut(s) 684
Cfr10I RCCGGY 1 cut(s) 716
Cfr13I GGNCC 1 cut(s) 926
CviAII CATG 8 cut(s) 40, 476, 480, 500, 657, 733, 765, 868
DdeI CTNAG 3 cut(s) 214, 815, 897
DpnI GATC 6 cut(s) 8, 111, 427, 644, 675, 770
DpnII GATC 6 cut(s) 6, 109, 425, 642, 673, 768
DraI TTTAAA 1 cut(s) 775
Eco32I GATATC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 926
Eco57I CTGAAG 4 cut(s) 257, 662, 925, 934
EcoNI CCTNNNNNAGG 3 cut(s) 394, 816, 921
EcoO109I RGGNCCY 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 93, 928
EcoRV GATATC 1 cut(s) 702
EcoT22I ATGCAT 1 cut(s) 481
FaeI CATG 8 cut(s) 43, 479, 483, 503, 660, 736, 768, 871
FatI CATG 8 cut(s) 39, 475, 479, 499, 656, 732, 764, 867
FokI GGATG 4 cut(s) 395, 429, 683, 897
FspBI CTAG 1 cut(s) 407
GsuI CTGGAG 2 cut(s) 387, 454
HaeIII GGCC 3 cut(s) 48, 84, 720
HapII CCGG 3 cut(s) 28, 55, 717
Hin1II CATG 8 cut(s) 43, 479, 483, 503, 660, 736, 768, 871
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 2 cut(s) 582, 822
HpaII CCGG 3 cut(s) 28, 55, 717
HphI GGTGA 3 cut(s) 622, 706, 732
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 3 cut(s) 491, 816, 944
Hpy188III TCNNGA 1 cut(s) 917
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 4 cut(s) 59, 95, 247, 406
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 4, 117, 402, 479, 623, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 577, 986
HpyF3I CTNAG 3 cut(s) 214, 815, 897
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 8 cut(s) 43, 479, 483, 503, 660, 736, 768, 871
Kzo9I GATC 6 cut(s) 6, 109, 425, 642, 673, 768
LmnI GCTCC 4 cut(s) 73, 368, 799, 970
LweI GCATC 2 cut(s) 670, 761
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 361, 520, 738
MalI GATC 6 cut(s) 8, 111, 427, 644, 675, 770
MboI GATC 6 cut(s) 6, 109, 425, 642, 673, 768
MboII GAAGA 7 cut(s) 51, 158, 218, 482, 515, 620, 668
MflI RGATCY 2 cut(s) 6, 768
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 2 cut(s) 247, 651
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 9 cut(s) 99, 113, 159, 453, 460, 731, 812, 822, 924
Mph1103I ATGCAT 1 cut(s) 481
MseI TTAA 7 cut(s) 246, 276, 294, 327, 351, 534, 774
MslI CAYNNNNRTG 3 cut(s) 407, 480, 872
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 3 cut(s) 28, 55, 717
MspR9I CCNGG 4 cut(s) 29, 55, 95, 930
MvaI CCWGG 2 cut(s) 95, 930
MwoI GCNNNNNNNGC 2 cut(s) 577, 986
NciI CCSGG 2 cut(s) 29, 55
NdeII GATC 6 cut(s) 6, 109, 425, 642, 673, 768
NlaIII CATG 8 cut(s) 43, 479, 483, 503, 660, 736, 768, 871
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 738
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 1 cut(s) 483
PfeI GAWTC 1 cut(s) 822
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PpuMI RGGWCCY 1 cut(s) 926
Psp1406I AACGTT 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 926
Psp6I CCWGG 2 cut(s) 93, 928
PspGI CCWGG 2 cut(s) 93, 928
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 926
PspPPI RGGWCCY 1 cut(s) 926
PstI CTGCAG 1 cut(s) 119
PsuI RGATCY 2 cut(s) 6, 768
PvuII CAGCTG 1 cut(s) 282
RseI CAYNNNNRTG 3 cut(s) 407, 480, 872
SaqAI TTAA 7 cut(s) 246, 276, 294, 327, 351, 534, 774
Sau3AI GATC 6 cut(s) 6, 109, 425, 642, 673, 768
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 4 cut(s) 29, 55, 95, 930
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 2 cut(s) 670, 761
SfcI CTRYAG 1 cut(s) 115
SinI GGWCC 1 cut(s) 926
SmiMI CAYNNNNRTG 3 cut(s) 407, 480, 872
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SpeI ACTAGT 1 cut(s) 406
Sse9I AATT 2 cut(s) 247, 651
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 4 cut(s) 27, 53, 93, 928
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 247, 651
TfiI GAWTC 1 cut(s) 822
Tru1I TTAA 7 cut(s) 246, 276, 294, 327, 351, 534, 774
Tru9I TTAA 7 cut(s) 246, 276, 294, 327, 351, 534, 774
TscAI CASTG 3 cut(s) 222, 652, 832
TseFI GTSAC 1 cut(s) 738
Tsp45I GTSAC 1 cut(s) 738
TspDTI ATGAA 4 cut(s) 219, 399, 408, 516
TspRI CASTG 3 cut(s) 222, 652, 832
VpaK11BI GGWCC 1 cut(s) 926
XagI CCTNNNNNAGG 3 cut(s) 394, 816, 921
XceI RCATGY 1 cut(s) 483
XspI CTAG 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.