Prupe.2G213500_v2.0.a1

mRNA-decapping enzyme subunit 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009616
Physical Location & Seq
Forward (+)
24508690 .. 24513450
4761 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G213500.1

Sequence Viewer

Length: 966 bp
ATGTCTGGCCTCCCTCGGTCCTCCAGTGCTCCGCTGAAGAACGGTCTTCCTCCCCAAGAACTACTCGACGACCTCTGCAGTCGGTTTGTTCTCAATGTTCCAAAAGAAGACCTGCAATCATTTGAGAGGATTTTATTTCTCGTGGAGTATGCTCATTGGTTTTATGAGGACAACTCAGTGGAGAAAAATCCATCGCTGAAGTCATTTAACTTGAAGGAATTCACTTCCTTATTGTTTAACAGCTGTGATGTTCTTAAGCCTTATGTTGCCCATATAGATGACATATTTAAGGACTTCACTTCTTACAAGGTTAAGGTTCCTGTAACTGGAGCCATTATTTTGGATGAAACCTATGAAAGGTGCCTACTCGTGAAGGGATGGAAAGGATCAAGCTGGAGTTTCCCACGCGGAAAAAAGAATAAAGATGAGGAAGACCATGCATGTGCCATCCGAGAAGTCCTTGAAGAAACAGGTTTTGATGTGACAAAACTACTTAACAAAGATGAGTACATTGAAGCTGTATTTGGACAGCAAAGGGTGCGGCTCTACATTATTGCTGGTGTGAGGGAGGATACTGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATCGCATGGCACCGACTGGATGACCTTCAGCCTGCAAGTAATGATGTGATATCTCGTGGTATCACTGGCCTCAAGCTTTACATGGTGTCCCCTTTTTTAGCATCATTGAAATCGTGGATTTTAGCACATCAGTCCGCAATTGCTCCAAGAACTGATATGCCACTCAAAGGAATCAGCATGTGGAAAGCAAAGAACAGCTTGATAGGTAGTAGCAACATGATAGTGGAGAGCCAATCAACTAAACCCGAACCTGATGTTCATCCTCCTGACACAGGACTTGGCAAGAGTTTCAGAAACTTCAGGTTTGACATTGCTCCAATCTTTCAAGCCATTGAAGCTGGTTTCCGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP2 NUDIX

Protein Analysis

322

Amino Acids

36.31

Weight (kDa)

6.13

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AccB1I GGYRCC 2 cut(s) 360, 621
AccII CGCG 1 cut(s) 408
AciI CCGC 4 cut(s) 32, 408, 541, 747
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 4 cut(s) 56, 218, 623, 895
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 4 cut(s) 326, 357, 779, 884
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 6 cut(s) 214, 464, 515, 721, 938, 947
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AluBI AGCT 6 cut(s) 243, 393, 518, 688, 810, 950
AluI AGCT 6 cut(s) 243, 393, 518, 688, 810, 950
Alw21I GWGCWC 1 cut(s) 31
AlwI GGATC 1 cut(s) 394
AoxI GGCC 2 cut(s) 7, 679
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 583
AvaII GGWCC 1 cut(s) 18
BanI GGYRCC 2 cut(s) 360, 621
BauI CACGAG 3 cut(s) 140, 368, 666
BbsI GAAGAC 3 cut(s) 38, 114, 438
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 3 cut(s) 199, 372, 455
BciVI GTATCC 1 cut(s) 565
BfmI CTRYAG 1 cut(s) 76
BfrI CTTAAG 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 120
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 4 cut(s) 318, 331, 362, 623
BmsI GCATC 1 cut(s) 722
BpiI GAAGAC 3 cut(s) 38, 114, 438
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 3 cut(s) 7, 348, 415
BpuEI CTTGAG 1 cut(s) 668
BsaBI GATNNNNATC 1 cut(s) 870
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 357, 779, 884
Bse1I ACTGG 4 cut(s) 24, 331, 633, 682
Bse3DI GCAATG 1 cut(s) 921
Bse8I GATNNNNATC 1 cut(s) 870
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 5 cut(s) 349, 383, 447, 637, 871
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 4 cut(s) 326, 357, 779, 884
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 4 cut(s) 24, 331, 633, 682
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 2 cut(s) 9, 681
BshNI GGYRCC 2 cut(s) 360, 621
BsiHKAI GWGCWC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 4 cut(s) 326, 357, 779, 884
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 2 cut(s) 9, 681
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 386, 603
BspACI CCGC 4 cut(s) 32, 408, 541, 747
BspANI GGCC 2 cut(s) 9, 681
BspCNI CTCAG 1 cut(s) 188
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 4 cut(s) 318, 331, 362, 623
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 394
BspT107I GGYRCC 2 cut(s) 360, 621
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 4 cut(s) 24, 331, 633, 682
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 386, 603
BssSI CACGAG 3 cut(s) 140, 368, 666
Bst2BI CACGAG 3 cut(s) 140, 368, 666
Bst4CI ACNGT 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 1 cut(s) 175
BstENI CCTNNNNNAGG 2 cut(s) 355, 882
BstF5I GGATG 5 cut(s) 349, 383, 447, 637, 871
BstFNI CGCG 1 cut(s) 408
BstKTI GATC 2 cut(s) 389, 606
BstMBI GATC 2 cut(s) 386, 603
BstMWI GCNNNNNNNGC 2 cut(s) 538, 947
BstNSI RCATGY 2 cut(s) 444, 793
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 1 cut(s) 408
BstV2I GAAGAC 3 cut(s) 38, 114, 438
BstXI CCANNNNNNTGG 1 cut(s) 340
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 2 cut(s) 9, 681
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 5 cut(s) 349, 383, 447, 637, 871
BtsIMutI CAGTG 4 cut(s) 31, 183, 613, 675
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 508
CviAII CATG 6 cut(s) 437, 441, 618, 694, 790, 829
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 388, 605
DpnII GATC 2 cut(s) 386, 603
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 18
Eco57I CTGAAG 4 cut(s) 56, 218, 623, 895
EcoNI CCTNNNNNAGG 2 cut(s) 355, 882
EcoRI GAATTC 1 cut(s) 218
EcoRV GATATC 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 442
FaeI CATG 6 cut(s) 440, 444, 621, 697, 793, 832
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 1 cut(s) 685
FatI CATG 6 cut(s) 436, 440, 617, 693, 789, 828
Fnu4HI GCNGC 1 cut(s) 542
FokI GGATG 5 cut(s) 356, 390, 434, 644, 858
Fsp4HI GCNGC 1 cut(s) 542
GluI GCNGC 1 cut(s) 542
GsuI CTGGAG 3 cut(s) 7, 348, 415
HaeIII GGCC 2 cut(s) 9, 681
Hin1II CATG 6 cut(s) 440, 444, 621, 697, 793, 832
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 1 cut(s) 783
HphI GGTGA 1 cut(s) 583
Hpy188I TCNGA 2 cut(s) 452, 905
Hpy188III TCNNGA 2 cut(s) 370, 878
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 208, 367, 647
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 5 cut(s) 78, 115, 440, 584, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 538, 947
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 6 cut(s) 440, 444, 621, 697, 793, 832
Kzo9I GATC 2 cut(s) 386, 603
LmnI GCTCC 4 cut(s) 34, 329, 760, 931
LweI GCATC 1 cut(s) 722
MaeIII GTNAC 2 cut(s) 322, 481
MalI GATC 2 cut(s) 388, 605
MboI GATC 2 cut(s) 386, 603
MboII GAAGA 5 cut(s) 38, 49, 119, 443, 476
MfeI CAATTG 1 cut(s) 750
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 218, 750
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 964
MslI CAYNNNNRTG 3 cut(s) 276, 441, 833
MspA1I CMGCKG 2 cut(s) 34, 243
MspCI CTTAAG 1 cut(s) 254
MunI CAATTG 1 cut(s) 750
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 538, 947
NdeII GATC 2 cut(s) 386, 603
NlaIII CATG 6 cut(s) 440, 444, 621, 697, 793, 832
NlaIV GGNNCC 4 cut(s) 318, 331, 362, 623
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 2 cut(s) 444, 793
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 783
PkrI GCNGC 1 cut(s) 543
PspN4I GGNNCC 4 cut(s) 318, 331, 362, 623
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 3 cut(s) 276, 441, 833
SaqAI TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 964
SatI GCNGC 1 cut(s) 542
Sau3AI GATC 2 cut(s) 386, 603
Sau96I GGNCC 1 cut(s) 18
SduI GDGCHC 1 cut(s) 31
SfaNI GCATC 1 cut(s) 722
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 3 cut(s) 276, 441, 833
SmlI CTYRAG 2 cut(s) 254, 683
SmoI CTYRAG 2 cut(s) 254, 683
Sse9I AATT 2 cut(s) 218, 750
SsiI CCGC 4 cut(s) 32, 408, 541, 747
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 66
TaqII GACCGA 1 cut(s) 6
TasI AATT 2 cut(s) 218, 750
TatI WGTACW 1 cut(s) 507
TauI GCSGC 1 cut(s) 544
TfiI GAWTC 1 cut(s) 783
Tru1I TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 964
Tru9I TTAA 7 cut(s) 207, 237, 255, 288, 312, 495, 964
TscAI CASTG 4 cut(s) 31, 183, 613, 682
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 360, 369, 860
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 4 cut(s) 31, 183, 613, 682
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 18
XagI CCTNNNNNAGG 2 cut(s) 355, 882
XapI RAATTY 1 cut(s) 218
XceI RCATGY 2 cut(s) 444, 793
XmnI GAANNNNTTC 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.