MD07G1174600.v1.1

mRNA-decapping enzyme subunit 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009616
Physical Location & Seq
Forward (+)
25255262 .. 25260121
4860 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1174600.v1.1.491

Sequence Viewer

Length: 975 bp
ATGTCTGGCCTCCCTCGGTCTTCGAGTGCTCCACTGAAGAATGGCCTTCCTCCCCAAGAACTCCTTGATGATCTGTGCAGCCGGTTTGTTCTAAATGTGCCAAAAGAAGACCTGCAATCATTTGAGAGGATTTTATTTCTCGTGGAATATGCTCATTGGTTTTATGAGGACAACTCAGTGGAGAAAAATCCATCGCTGAAGTCTTTCAATTTGAAGGAGTTCACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAAACCTTATGTTGCCCATATAGATGACATATTCAAGGACTTCACTTCTTATAAGGTCAAGGTTCCTGTAACTGGCGCAATCATTTTGGATGAAACCTTTGAAAGGTGCTTGCTCGTGAAGGGATGGAAAGGATCAAGTTGGAGTTTCCCTCGTGGCAAAAAGAATAAAGATGAAGAAGACCATGCATGTGCCATCAGAGAAGTCCAGGAAGAAACAGGTTTTGATGTTACAAAGCTTCTCGACAAAGATGAGTATATTGAAGTTATATTTGGACAACAAAGGGTGCGGCTCTACATTATTGCTGGTGTGAGAGAGGATACTGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATCGCATGGCACCGGCTGGATGATCTTCAGCCTGCAAGTGATAATGTGATATCTCGTGGTGTCACCGGCCTCAAGCTTTACATGGTGTCCCCTTTTCTGGCAACATTGAGATCATGGATTTTATCACATCAGTCCCCGGTTGCTCCAAGACCTGATATGCCTCTCAAAGGAATCAGCGTGTGGAATGCGAAAAGCAGCTCGATAGGGAGTAGTAGCCCCATGATAGTGGAGAGCCAATCGACTAAACCTGAGCCCGAGGTTCGTCCTTCTGAGACAGGACCAGGTGAGAGTTTCAGAAACTTCAGGTTTGATGTTGCTCCAATCTTGCAAGCAATTGATGCTGGTTTCCGTTCTTCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP2 NUDIX

Protein Analysis

325

Amino Acids

36.57

Weight (kDa)

5.55

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP2 PF05026 20 - 102 3.6e-30 Dcp2, box A domain
NUDIX PF00293 107 - 220 4.8e-16 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 621
AciI CCGC 1 cut(s) 541
AclWI GGATC 1 cut(s) 394
AcuI CTGAAG 4 cut(s) 56, 218, 623, 898
AfiI CCNNNNNNNGG 4 cut(s) 326, 357, 709, 779
AgsI TTSAA 6 cut(s) 208, 214, 289, 356, 515, 969
AjnI CCWGG 2 cut(s) 459, 892
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AluBI AGCT 4 cut(s) 243, 490, 688, 810
AluI AGCT 4 cut(s) 243, 490, 688, 810
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 878
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 866
AoxI GGCC 3 cut(s) 7, 43, 679
ApeKI GCWGC 2 cut(s) 78, 807
Asp700I GAANNNNTTC 2 cut(s) 203, 218
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 890
AsuC2I CCSGG 1 cut(s) 749
AsuHPI GGTGA 3 cut(s) 583, 667, 908
AvaI CYCGRG 1 cut(s) 866
AvaII GGWCC 1 cut(s) 890
BanI GGYRCC 1 cut(s) 621
BanII GRGCYC 1 cut(s) 867
BauI CACGAG 4 cut(s) 140, 368, 405, 666
BbsI GAAGAC 3 cut(s) 12, 114, 438
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 90, 819
BccI CCATC 3 cut(s) 199, 372, 455
BciT130I CCWGG 2 cut(s) 461, 894
BciVI GTATCC 1 cut(s) 565
BcnI CCSGG 1 cut(s) 749
BcoDI GTCTC 1 cut(s) 878
BfuAI ACCTGC 1 cut(s) 120
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 3 cut(s) 79, 542, 808
BlsI GCNGC 3 cut(s) 80, 543, 809
Bme1390I CCNGG 3 cut(s) 461, 749, 894
Bme18I GGWCC 1 cut(s) 890
BmeT110I CYCGRG 1 cut(s) 866
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 2 cut(s) 318, 623
BmrFI CCNGG 3 cut(s) 461, 749, 894
BmsI GCATC 1 cut(s) 940
BpiI GAAGAC 3 cut(s) 12, 114, 438
BplI GAGNNNNNCTC 4 cut(s) 158, 190, 388, 420
Bpu10I CCTNAGC 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 749
BsaJI CCNNGG 3 cut(s) 14, 747, 867
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 357, 709, 779
Bse118I RCCGGY 3 cut(s) 81, 624, 677
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 2 cut(s) 461, 894
BseDI CCNNGG 3 cut(s) 14, 747, 867
BseGI GGATG 3 cut(s) 349, 383, 637
BseLI CCNNNNNNNGG 4 cut(s) 326, 357, 709, 779
BseMII CTCAG 3 cut(s) 189, 852, 873
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 90, 819
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 3 cut(s) 9, 45, 681
BshNI GGYRCC 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 866
BsiSI CCGG 4 cut(s) 82, 625, 678, 749
BslFI GGGAC 2 cut(s) 685, 730
BslI CCNNNNNNNGG 4 cut(s) 326, 357, 709, 779
BsmAI GTCTC 1 cut(s) 878
BsmFI GGGAC 2 cut(s) 685, 730
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 3 cut(s) 9, 45, 681
BsoBI CYCGRG 1 cut(s) 866
Bsp1286I GDGCHC 2 cut(s) 31, 867
Bsp143I GATC 5 cut(s) 70, 386, 603, 634, 722
BspACI CCGC 1 cut(s) 541
BspANI GGCC 3 cut(s) 9, 45, 681
BspCNI CTCAG 3 cut(s) 188, 853, 874
BspLI GGNNCC 2 cut(s) 318, 623
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 621
BsrFI RCCGGY 3 cut(s) 81, 624, 677
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 3 cut(s) 81, 624, 677
BssECI CCNNGG 3 cut(s) 14, 747, 867
BssMI GATC 5 cut(s) 70, 386, 603, 634, 722
BssSI CACGAG 4 cut(s) 140, 368, 405, 666
Bst2BI CACGAG 4 cut(s) 140, 368, 405, 666
Bst2UI CCWGG 2 cut(s) 461, 894
BstAPI GCANNNNNTGC 1 cut(s) 950
BstC8I GCNNGC 3 cut(s) 365, 645, 942
BstDEI CTNAG 3 cut(s) 175, 861, 882
BstENI CCTNNNNNAGG 2 cut(s) 355, 777
BstF5I GGATG 3 cut(s) 349, 383, 637
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 5 cut(s) 73, 389, 606, 637, 725
BstMAI GTCTC 1 cut(s) 878
BstMBI GATC 5 cut(s) 70, 386, 603, 634, 722
BstMWI GCNNNNNNNGC 1 cut(s) 950
BstNI CCWGG 2 cut(s) 461, 894
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 3 cut(s) 459, 747, 892
BstV1I GCAGC 2 cut(s) 90, 819
BstV2I GAAGAC 3 cut(s) 12, 114, 438
BstXI CCANNNNNNTGG 1 cut(s) 838
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 3 cut(s) 9, 45, 681
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 349, 383, 637
BtsIMutI CAGTG 3 cut(s) 32, 183, 613
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 365, 645, 942
CfoI GCGC 1 cut(s) 332
Cfr10I RCCGGY 3 cut(s) 81, 624, 677
Cfr13I GGNCC 1 cut(s) 890
CsiI ACCWGGT 1 cut(s) 892
CviAII CATG 6 cut(s) 437, 441, 618, 694, 726, 832
DdeI CTNAG 3 cut(s) 175, 861, 882
DpnI GATC 5 cut(s) 72, 388, 605, 636, 724
DpnII GATC 5 cut(s) 70, 386, 603, 634, 722
Eco24I GRGCYC 1 cut(s) 867
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 890
Eco57I CTGAAG 4 cut(s) 56, 218, 623, 898
Eco88I CYCGRG 1 cut(s) 866
EcoNI CCTNNNNNAGG 2 cut(s) 355, 777
EcoRII CCWGG 2 cut(s) 459, 892
EcoRV GATATC 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 867
FaeI CATG 6 cut(s) 440, 444, 621, 697, 729, 835
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 2 cut(s) 685, 730
FatI CATG 6 cut(s) 436, 440, 617, 693, 725, 831
Fnu4HI GCNGC 3 cut(s) 79, 542, 808
FokI GGATG 3 cut(s) 356, 390, 644
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 3 cut(s) 79, 542, 808
GlaI GCGC 1 cut(s) 331
GluI GCNGC 3 cut(s) 79, 542, 808
HaeIII GGCC 3 cut(s) 9, 45, 681
HapII CCGG 4 cut(s) 82, 625, 678, 749
HhaI GCGC 1 cut(s) 332
Hin1II CATG 6 cut(s) 440, 444, 621, 697, 729, 835
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 2 cut(s) 488, 686
HinfI GANTC 1 cut(s) 783
HpaII CCGG 4 cut(s) 82, 625, 678, 749
HphI GGTGA 3 cut(s) 583, 667, 908
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 3 cut(s) 452, 883, 908
Hpy188III TCNNGA 2 cut(s) 370, 494
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 4 cut(s) 56, 208, 367, 888
HpyCH4V TGCA 6 cut(s) 78, 115, 440, 584, 647, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 950
HpyF3I CTNAG 3 cut(s) 175, 861, 882
Hsp92II CATG 6 cut(s) 440, 444, 621, 697, 729, 835
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 5 cut(s) 70, 386, 603, 634, 722
LmnI GCTCC 3 cut(s) 34, 760, 934
Lsp1109I GCAGC 2 cut(s) 90, 819
LweI GCATC 1 cut(s) 940
MabI ACCWGGT 1 cut(s) 892
MaeIII GTNAC 3 cut(s) 322, 481, 673
MalI GATC 5 cut(s) 72, 388, 605, 636, 724
MboI GATC 5 cut(s) 70, 386, 603, 634, 722
MboII GAAGA 8 cut(s) 12, 49, 119, 440, 443, 476, 629, 957
MfeI CAATTG 1 cut(s) 945
MhlI GDGCHC 2 cut(s) 31, 867
MluCI AATT 2 cut(s) 208, 945
MmeI TCCRAC 1 cut(s) 374
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 2 cut(s) 203, 218
MseI TTAA 2 cut(s) 237, 255
MslI CAYNNNNRTG 3 cut(s) 276, 441, 836
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 4 cut(s) 82, 625, 678, 749
MspR9I CCNGG 3 cut(s) 461, 749, 894
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 2 cut(s) 461, 894
MwoI GCNNNNNNNGC 1 cut(s) 950
NciI CCSGG 1 cut(s) 749
NdeII GATC 5 cut(s) 70, 386, 603, 634, 722
NlaIII CATG 6 cut(s) 440, 444, 621, 697, 729, 835
NlaIV GGNNCC 2 cut(s) 318, 623
NmuCI GTSAC 1 cut(s) 673
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 444
PctI GAATGC 1 cut(s) 802
PdmI GAANNNNTTC 2 cut(s) 203, 218
PfeI GAWTC 1 cut(s) 783
PfoI TCCNGGA 1 cut(s) 459
PkrI GCNGC 3 cut(s) 80, 543, 809
PsiI TTATAA 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 459, 892
PspGI CCWGG 2 cut(s) 459, 892
PspN4I GGNNCC 2 cut(s) 318, 623
PspPI GGNCC 1 cut(s) 890
PvuII CAGCTG 1 cut(s) 243
RseI CAYNNNNRTG 3 cut(s) 276, 441, 836
SaqAI TTAA 2 cut(s) 237, 255
SatI GCNGC 3 cut(s) 79, 542, 808
Sau3AI GATC 5 cut(s) 70, 386, 603, 634, 722
Sau96I GGNCC 1 cut(s) 890
ScrFI CCNGG 3 cut(s) 461, 749, 894
SduI GDGCHC 2 cut(s) 31, 867
SexAI ACCWGGT 1 cut(s) 892
SfaNI GCATC 1 cut(s) 940
SinI GGWCC 1 cut(s) 890
SmiMI CAYNNNNRTG 3 cut(s) 276, 441, 836
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 2 cut(s) 208, 945
SsiI CCGC 1 cut(s) 541
StyD4I CCNGG 3 cut(s) 459, 747, 892
TaqI TCGA 4 cut(s) 23, 495, 812, 851
TaqII GACCGA 1 cut(s) 6
TasI AATT 2 cut(s) 208, 945
TauI GCSGC 1 cut(s) 544
TfiI GAWTC 1 cut(s) 783
Tru1I TTAA 2 cut(s) 237, 255
Tru9I TTAA 2 cut(s) 237, 255
TscAI CASTG 3 cut(s) 39, 183, 613
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 2 cut(s) 78, 807
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 2 cut(s) 360, 441
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 3 cut(s) 39, 183, 613
VpaK11BI GGWCC 1 cut(s) 890
XagI CCTNNNNNAGG 2 cut(s) 355, 777
XceI RCATGY 1 cut(s) 444
XmnI GAANNNNTTC 2 cut(s) 203, 218
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.