AT5G13610

Uncharacterised ACR, YagE family COG1723

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014410
Physical Location & Seq
Forward (+)
4382975 .. 4385099
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13610.1

Sequence Viewer

Length: 1209 bp
ATGATGCGTTCCGTTGACGTCTACGTGAAAACTCTAGGCCCTCCCGTCCGTTCAATTCTCTACTCGATCTTTACCTCTCAGCAAAAACCTTCGTCGCTGCCTTCGCTTCCATTTCACTTTTCGTTGCGTTCGTCGTCGAATATTCCCACTCGTTGTTTCTCCAATGTCGTTGCGAAATCCAATTCTCCGATTTACGATTTTCAAGGATTCCGAAATCTCTTCACTGAGAGGGCTATCTCTTCGTCTACGACGACCCCCGTCGCTTCTGCTCAGCCGCAGCAGCTTCAGAATCAGAATCAGCATCCAGCTGAGGTTGATGAAGAGATTTCTATGGGCTTAGAGGACGAAGCCAAGCTTTCTATTCCTGTGCGAGCTTATTTCTTCTCCACTAGCGTTGATTTGAGAAGCTTAATAGAGCAGAACAAGCAGAACTTCATCCCACCTACTTCGCGTATGACTAACTATGTTGTTCTTAAGTTTGGCAATCATTCTGATCCCACTGATACTACTCGAGGACGCATAAGTGGGAGTGAGTCTATTTACATGGTAGTATTTCATTATGGATCGATTGTCTTGTTTAATGTAAGGGAACATGAGGTTGATGAATATCTTAAAGTAGTGGAGAGGCATGCCTCTGGGTTGCTTCCAGAAATGAGAAAAGATGAATATGAAGTAAGAGAGAATCCAAATCTGGACACATGGATGGAGGTAGGACGGGATTTTATCAGGTTGCAGTTCTTGAATACTGATGGGATCAGAACCATAGGATGTGTTCTGGGCCAGAGTATTGCTCTGGATTACTATGGCCGGCAGGTTGATGGTATGGTAGCAGAATTTACTGAGATAAACCGTCAGTTGGAGATAACAGGAACGTTTACAATGAAAAGGAAAAAGCTGTTCCAGTTGGTTGGAAAGGCTAATGTGATTCTGGCTGATGTGATTCTGAAGCTTGGTCTTTTTGAGAGGTCAGATATAGCTTGGAAGGATGCGAAATATGGTCAGATATGGGAGTTTCTGAGAGATGAATTTGAACTGACACAGAGTTTTGCAAACCTTGATTATAAGCTCAAGTTTGTAGAGCACAACGTTCGTTTCCTTCAAGAAATACTTCAGAACAGGAAATCAGCTACTCTGGAGTGGCTAATCATTATCCTGATTAGTATGGAGATCGCGATTTCTTTCTATAATATGTCTCGGGCATCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF155

Protein Analysis

402

Amino Acids

46.2

Weight (kDa)

6.22

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF155 PF02582 182 - 352 4.1e-32 RMND1/Sif2-Sif3/Mrx10, DUF155
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13610
fragaria_vesca FvH4_7g20360
malus_domestica MD01G1113300.v1.1 MD07G1180700.v1.1
prunus_persica Prupe.2G220000_v2.0.a1
pyrus_communis pycom01g14160 pycom07g17400
rosa_chinensis RchiOBHm_Chr1g0364321
rosa_laevigata RLG00000027495
rosa_multiflora Rmu_sc0007470.1_g000002
rosa_roxburghii Rroxscaffold_4G00292430
rosa_rugosa Rorug01G0315400
rosa_samantha Rh1AG323100 Rh1BG285700 Rh1CG302400 Rh1DG317200
rosa_wichuraiana Rw1G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 802
AccI GTMKAC 2 cut(s) 21, 245
AccII CGCG 2 cut(s) 451, 1172
AciI CCGC 1 cut(s) 275
AclI AACGTT 2 cut(s) 872, 1086
AclWI GGATC 3 cut(s) 488, 571, 761
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 2 cut(s) 833, 1025
AcuI CTGAAG 3 cut(s) 269, 965, 1094
AcyI GRCGYC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 856
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 5 cut(s) 54, 203, 742, 1031, 1100
Alw21I GWGCWC 1 cut(s) 1083
Alw26I GTCTC 1 cut(s) 1197
AlwI GGATC 3 cut(s) 488, 571, 761
Ama87I CYCGRG 2 cut(s) 510, 1194
AoxI GGCC 3 cut(s) 37, 778, 805
ApeKI GCWGC 3 cut(s) 97, 277, 280
ApoI RAATTY 2 cut(s) 833, 1025
Asp700I GAANNNNTTC 1 cut(s) 1107
AspS9I GGNCC 2 cut(s) 38, 778
AvaI CYCGRG 2 cut(s) 510, 1194
Bbv12I GWGCWC 1 cut(s) 1083
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 84, 289, 292
BccI CCATC 3 cut(s) 697, 743, 812
BcgI CGANNNNNNTGC 2 cut(s) 1070, 1104
BcoDI GTCTC 1 cut(s) 1197
BfaI CTAG 2 cut(s) 35, 390
BfrI CTTAAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 802
BisI GCNGC 4 cut(s) 98, 275, 278, 281
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 4 cut(s) 99, 276, 279, 282
BmeT110I CYCGRG 2 cut(s) 510, 1194
BmgT120I GGNCC 2 cut(s) 38, 778
BmsI GCATC 2 cut(s) 310, 976
BoxI GACNNNNGTC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 775, 807
BpmI CTGGAG 1 cut(s) 1154
Bpu10I CCTNAGC 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 1052
Bsa29I ATCGAT 1 cut(s) 566
BsaAI YACGTR 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 856
Bse118I RCCGGY 1 cut(s) 807
Bse1I ACTGG 1 cut(s) 901
Bse8I GATNNNNATC 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 566
BseGI GGATG 6 cut(s) 301, 435, 708, 773, 991, 1199
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 1 cut(s) 856
BseMII CTCAG 6 cut(s) 92, 216, 284, 300, 831, 1007
BseNI ACTGG 1 cut(s) 901
BseXI GCAGC 3 cut(s) 84, 289, 292
Bsh1236I CGCG 2 cut(s) 451, 1172
BshFI GGCC 3 cut(s) 39, 780, 807
BshVI ATCGAT 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 1083
BsiHKCI CYCGRG 2 cut(s) 510, 1194
BsiSI CCGG 1 cut(s) 808
BslI CCNNNNNNNGG 1 cut(s) 856
BsmAI GTCTC 1 cut(s) 1197
BsnI GGCC 3 cut(s) 39, 780, 807
BsoBI CYCGRG 2 cut(s) 510, 1194
Bsp1286I GDGCHC 1 cut(s) 1083
Bsp143I GATC 5 cut(s) 66, 493, 563, 753, 1167
Bsp1720I GCTNAGC 1 cut(s) 270
Bsp68I TCGCGA 1 cut(s) 1172
BspACI CCGC 1 cut(s) 275
BspANI GGCC 3 cut(s) 39, 780, 807
BspCNI CTCAG 6 cut(s) 91, 217, 283, 301, 832, 1008
BspDI ATCGAT 1 cut(s) 566
BspFNI CGCG 2 cut(s) 451, 1172
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 3 cut(s) 488, 571, 761
BspTI CTTAAG 1 cut(s) 473
BsrFI RCCGGY 1 cut(s) 807
BsrI ACTGG 1 cut(s) 901
BssAI RCCGGY 1 cut(s) 807
BssMI GATC 5 cut(s) 66, 493, 563, 753, 1167
BssNI GRCGYC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 851
Bst6I CTCTTC 3 cut(s) 224, 244, 315
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 473
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 372, 630, 809
BstDEI CTNAG 7 cut(s) 78, 225, 270, 309, 337, 840, 1016
BstF5I GGATG 6 cut(s) 301, 435, 708, 773, 991, 1199
BstFNI CGCG 2 cut(s) 451, 1172
BstKTI GATC 5 cut(s) 69, 496, 566, 756, 1170
BstMAI GTCTC 1 cut(s) 1197
BstMBI GATC 5 cut(s) 66, 493, 563, 753, 1167
BstMWI GCNNNNNNNGC 3 cut(s) 103, 280, 424
BstNSI RCATGY 1 cut(s) 632
BstPAI GACNNNNGTC 1 cut(s) 257
BstUI CGCG 2 cut(s) 451, 1172
BstV1I GCAGC 3 cut(s) 84, 289, 292
BstXI CCANNNNNNTGG 1 cut(s) 908
Bsu15I ATCGAT 1 cut(s) 566
BsuRI GGCC 3 cut(s) 39, 780, 807
BsuTUI ATCGAT 1 cut(s) 566
BtsCI GGATG 6 cut(s) 301, 435, 708, 773, 991, 1199
BtsIMutI CAGTG 2 cut(s) 222, 498
BtuMI TCGCGA 1 cut(s) 1172
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 3 cut(s) 372, 630, 809
Cfr10I RCCGGY 1 cut(s) 807
Cfr13I GGNCC 2 cut(s) 38, 778
ClaI ATCGAT 1 cut(s) 566
CseI GACGC 1 cut(s) 525
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 4 cut(s) 544, 593, 629, 699
DdeI CTNAG 7 cut(s) 78, 225, 270, 309, 337, 840, 1016
DpnI GATC 5 cut(s) 68, 495, 565, 755, 1169
DpnII GATC 5 cut(s) 66, 493, 563, 753, 1167
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 3 cut(s) 224, 244, 315
EarI CTCTTC 3 cut(s) 224, 244, 315
Eco57I CTGAAG 3 cut(s) 269, 965, 1094
Eco88I CYCGRG 2 cut(s) 510, 1194
EcoO109I RGGNCCY 1 cut(s) 38
FaeI CATG 4 cut(s) 547, 596, 632, 702
FalI AAGNNNNNCTT 6 cut(s) 339, 371, 416, 448, 1092, 1124
FatI CATG 4 cut(s) 543, 592, 628, 698
FblI GTMKAC 2 cut(s) 21, 245
Fnu4HI GCNGC 4 cut(s) 98, 275, 278, 281
FokI GGATG 6 cut(s) 288, 422, 715, 780, 998, 1186
Fsp4HI GCNGC 4 cut(s) 98, 275, 278, 281
FspBI CTAG 2 cut(s) 35, 390
GluI GCNGC 4 cut(s) 98, 275, 278, 281
GsuI CTGGAG 1 cut(s) 1154
HaeIII GGCC 3 cut(s) 39, 780, 807
HapII CCGG 1 cut(s) 808
HgaI GACGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 4 cut(s) 547, 596, 632, 702
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 3 cut(s) 353, 406, 947
HinfI GANTC 7 cut(s) 207, 289, 295, 533, 682, 925, 940
HpaII CCGG 1 cut(s) 808
Hpy166II GTNNAC 4 cut(s) 16, 22, 246, 876
Hpy188III TCNNGA 8 cut(s) 647, 692, 739, 794, 1100, 1133, 1153, 1171
Hpy8I GTNNAC 4 cut(s) 16, 22, 246, 876
Hpy99I CGWCG 5 cut(s) 97, 136, 139, 253, 263
HpyAV CCTTC 4 cut(s) 99, 111, 976, 1106
HpyCH4III ACNGT 1 cut(s) 851
HpyCH4IV ACGT 4 cut(s) 18, 24, 872, 1086
HpyCH4V TGCA 2 cut(s) 733, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 280, 424
HpyF3I CTNAG 7 cut(s) 78, 225, 270, 309, 337, 840, 1016
HpySE526I ACGT 4 cut(s) 18, 24, 872, 1086
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 4 cut(s) 547, 596, 632, 702
KroI GCCGGC 1 cut(s) 807
KroNI GCCGGC 1 cut(s) 809
Kzo9I GATC 5 cut(s) 66, 493, 563, 753, 1167
Lsp1109I GCAGC 3 cut(s) 84, 289, 292
LweI GCATC 2 cut(s) 310, 976
MaeI CTAG 2 cut(s) 35, 390
MaeII ACGT 4 cut(s) 18, 24, 872, 1086
MalI GATC 5 cut(s) 68, 495, 565, 755, 1169
MboI GATC 5 cut(s) 66, 493, 563, 753, 1167
MboII GAAGA 4 cut(s) 211, 231, 332, 373
MhlI GDGCHC 1 cut(s) 1083
MluCI AATT 4 cut(s) 54, 181, 833, 1025
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 2 cut(s) 837, 889
MroNI GCCGGC 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 4 cut(s) 410, 474, 579, 612
MslI CAYNNNNRTG 2 cut(s) 701, 1204
MspA1I CMGCKG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 808
MvnI CGCG 2 cut(s) 451, 1172
MwoI GCNNNNNNNGC 3 cut(s) 103, 280, 424
NaeI GCCGGC 1 cut(s) 809
NdeII GATC 5 cut(s) 66, 493, 563, 753, 1167
NgoMIV GCCGGC 1 cut(s) 807
NlaIII CATG 4 cut(s) 547, 596, 632, 702
NruI TCGCGA 1 cut(s) 1172
NspI RCATGY 1 cut(s) 632
PaeI GCATGC 1 cut(s) 632
PaeR7I CTCGAG 1 cut(s) 510
PcsI WCGNNNNNNNCGW 2 cut(s) 128, 248
PdiI GCCGGC 1 cut(s) 809
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 6 cut(s) 207, 289, 295, 682, 925, 940
PkrI GCNGC 4 cut(s) 99, 276, 279, 282
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Ppu21I YACGTR 1 cut(s) 25
PshAI GACNNNNGTC 1 cut(s) 257
PsiI TTATAA 1 cut(s) 1062
Psp1406I AACGTT 2 cut(s) 872, 1086
PspPI GGNCC 2 cut(s) 38, 778
PspXI VCTCGAGB 1 cut(s) 510
PvuII CAGCTG 1 cut(s) 308
RruI TCGCGA 1 cut(s) 1172
RseI CAYNNNNRTG 2 cut(s) 701, 1204
SaqAI TTAA 4 cut(s) 410, 474, 579, 612
SatI GCNGC 4 cut(s) 98, 275, 278, 281
Sau3AI GATC 5 cut(s) 66, 493, 563, 753, 1167
Sau96I GGNCC 2 cut(s) 38, 778
SchI GAGTC 1 cut(s) 542
SduI GDGCHC 1 cut(s) 1083
SfaNI GCATC 2 cut(s) 310, 976
Sfr274I CTCGAG 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 701, 1204
SmlI CTYRAG 3 cut(s) 473, 510, 1067
SmoI CTYRAG 3 cut(s) 473, 510, 1067
SphI GCATGC 1 cut(s) 632
Sse9I AATT 4 cut(s) 54, 181, 833, 1025
SsiI CCGC 1 cut(s) 275
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 35, 390
TaaI ACNGT 1 cut(s) 851
TaiI ACGT 4 cut(s) 21, 27, 875, 1089
TaqI TCGA 4 cut(s) 65, 137, 511, 566
TasI AATT 4 cut(s) 54, 181, 833, 1025
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 6 cut(s) 207, 289, 295, 682, 925, 940
Tru1I TTAA 4 cut(s) 410, 474, 579, 612
Tru9I TTAA 4 cut(s) 410, 474, 579, 612
TscAI CASTG 2 cut(s) 229, 505
TseI GCWGC 3 cut(s) 97, 277, 280
TspDTI ATGAA 8 cut(s) 333, 424, 545, 618, 678, 684, 896, 1038
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 229, 505
Vha464I CTTAAG 1 cut(s) 473
XapI RAATTY 2 cut(s) 833, 1025
XceI RCATGY 1 cut(s) 632
XhoI CTCGAG 1 cut(s) 510
XmiI GTMKAC 2 cut(s) 21, 245
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 2 cut(s) 35, 390
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.