Rorug01G0315400

Uncharacterised ACR, YagE family COG1723

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
43314077 .. 43317310
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0315400.1

Sequence Viewer

Length: 1392 bp
ATGGAGAAAAGAGCTTGCCTAATTTCTAGTTCTGTTCAAGGAAAGGATGCGTACAAGTTGGTGGACAGAATCAGTGAGCTGCCGGATGAAATTCTGGTTAGAATCTTGTCTCTCTTGCCACTAAAGGAAGCTGGAGCTACCAGTACCCTTTCTCGGAGTTGGCTTTATATGTGGGCATCCACTAAAAATCTCAATTTTGATGCTGATGAAACTGTACGGCGTTATTATTGGGAGTACAACCAAGAACTCAAAGACCAGGAAAGCTCTAAATATGTAGATTGGGTCAATCATGTGGTGGAACAGCATAGAGAGCAGGAGGACTTGGAACAATTTAGGGTTTGCTTCCTTGGTCTGGATAACCGTTTTACTAGTTCAATTGATAAATGGATTCAGTTTGCAATGAAAAAGAGAGTTCAAGTTCTGGTGTTGGATTTTGTGACGAGATTATATGATGCAAAACATTACACATTTTCAAACTACCTAGAAACGTCCTCTGAACACTTTAGCTTTGAATCCCTCAAAGTTCTTCATTTGGAATGCGTTAATGTGACTGGAGATGTTCTTGAGTGCATGTTGCGAAACTGCCCTTTTCTTGAACAAGTTTCAGTGTATTATGCCAACAATTTGGTTGAGTTAAGCGTTGTCGATCCATCCATTGCACTCAAGTATTTGGAGATAAGATATTGTGGTGACATCAAAAGGATTCAGATTCGTGATGCAAACCTTGTTTCTTTGTCTTATAGTGGACGTCCCATAGAATTGGATCTCAGTAATGTGCCTTTGCTGATTGAGGTATCCATTTGTTATGATGGGTTTACCAATGAATCCATGAGACTTGCCTTCACCCATCTTTCTTGCTGCATAAATCAGCTACAGACTCTCATGCTGGATATCCCCATGTTCGTGCAGGTCCACCAAAAGAATTTCCCTGTACTACCAAATCTCAAGAATTTAGAAGTAAGAGTCTGTGCAGATGCTTGCCAGAGTACTCTTCCTGTGCTAACCTCTTTCATGAAGGCATTTCCTAATTTGCAGAGGCTCGTTTTGAAGTTGGAATTCTCCTTTCCATTTAACCCAACAGAAGGAGAGAAAATGTTTAAAGGACTATGCTATGGCATTTACACTGAGAAATGTCCACATCGTAACATCAAGGTTGTAGAAATACTAGGGTATCGTCATGCTTCAACTACTGTTGAGCTTGTCAACTATATAGTAAAGAATGTTGTTGCGCTAGACAAAATTGTTATTGATCCTGCCCGGAATTGGGCACATCATGGTACCAGAGCGAATAAGAGAATTGAAGAGGTCAAGCTTGAAGAAGAGGCCAGAGATCATGCTATGCACTTTATTAGAAAAGTAGTGCCATCAAGTGTAGAATTTGTCTGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

53.7

Weight (kDa)

6.15

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 62 1.4e-06 F-box domain
LRR_At5g56370 PF24758 162 - 347 6.9e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 169 - 460 4.7e-31 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 751
Acc36I ACCTGC 1 cut(s) 898
Acc65I GGTACC 1 cut(s) 1277
AccB1I GGYRCC 1 cut(s) 1277
AclWI GGATC 3 cut(s) 641, 771, 1244
AcsI RAATTY 5 cut(s) 90, 922, 949, 1055, 1376
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 7 cut(s) 53, 145, 216, 236, 933, 988, 1279
AfiI CCNNNNNNNGG 5 cut(s) 153, 352, 1082, 1263, 1264
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 9 cut(s) 14, 79, 131, 137, 264, 507, 871, 1198, 1312
AluI AGCT 9 cut(s) 14, 79, 131, 137, 264, 507, 871, 1198, 1312
Alw26I GTCTC 2 cut(s) 114, 826
AlwI GGATC 3 cut(s) 641, 771, 1244
AoxI GGCC 1 cut(s) 1323
ApeKI GCWGC 2 cut(s) 79, 858
ApoI RAATTY 5 cut(s) 90, 922, 949, 1055, 1376
Asp718I GGTACC 1 cut(s) 1277
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 1 cut(s) 910
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 2 cut(s) 701, 835
AvaII GGWCC 1 cut(s) 910
BaeGI GKGCMC 1 cut(s) 1270
BaeI ACNNNNGTAYC 2 cut(s) 1154, 1187
BanI GGYRCC 1 cut(s) 1277
BbvI GCAGC 2 cut(s) 66, 845
BccI CCATC 4 cut(s) 658, 803, 855, 1372
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 257
BciVI GTATCC 1 cut(s) 805
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 2 cut(s) 114, 826
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 5 cut(s) 27, 369, 482, 1166, 1232
BfmI CTRYAG 2 cut(s) 872, 1388
BfuAI ACCTGC 1 cut(s) 898
BfuI GTATCC 1 cut(s) 805
BisI GCNGC 2 cut(s) 80, 859
BlsI GCNGC 2 cut(s) 81, 860
BmcAI AGTACT 1 cut(s) 988
Bme1390I CCNGG 2 cut(s) 257, 1258
Bme18I GGWCC 1 cut(s) 910
BmgT120I GGNCC 1 cut(s) 910
BmiI GGNNCC 1 cut(s) 1279
BmrFI CCNGG 2 cut(s) 257, 1258
BmsI GCATC 6 cut(s) 37, 185, 190, 442, 706, 964
BpmI CTGGAG 2 cut(s) 153, 573
BpuEI CTTGAG 3 cut(s) 584, 647, 929
BpuMI CCSGG 1 cut(s) 1258
BsaHI GRCGYC 1 cut(s) 748
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 352, 1082, 1263, 1264
Bse1I ACTGG 2 cut(s) 141, 556
Bse3DI GCAATG 2 cut(s) 405, 654
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 4 cut(s) 52, 91, 176, 650
BseLI CCNNNNNNNGG 5 cut(s) 153, 352, 1082, 1263, 1264
BseMI GCAATG 2 cut(s) 405, 654
BseMII CTCAG 2 cut(s) 781, 1116
BseNI ACTGG 2 cut(s) 141, 556
BseSI GKGCMC 1 cut(s) 1270
BseXI GCAGC 2 cut(s) 66, 845
BsgI GTGCAG 2 cut(s) 926, 990
BshFI GGCC 1 cut(s) 1325
BshNI GGYRCC 1 cut(s) 1277
BsiSI CCGG 2 cut(s) 83, 1258
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 5 cut(s) 153, 352, 1082, 1263, 1264
BsmAI GTCTC 2 cut(s) 114, 826
BsmFI GGGAC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 1 cut(s) 1325
Bsp1286I GDGCHC 1 cut(s) 1270
Bsp143I GATC 4 cut(s) 646, 763, 1249, 1330
BspANI GGCC 1 cut(s) 1325
BspCNI CTCAG 2 cut(s) 780, 1117
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 1 cut(s) 1279
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 3 cut(s) 641, 771, 1244
BspT107I GGYRCC 1 cut(s) 1277
BsrDI GCAATG 2 cut(s) 405, 654
BsrI ACTGG 2 cut(s) 141, 556
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 4 cut(s) 646, 763, 1249, 1330
BssNI GRCGYC 1 cut(s) 748
BssT1I CCWWGG 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 3 cut(s) 214, 362, 1192
Bst6I CTCTTC 3 cut(s) 996, 1296, 1314
BstACI GRCGYC 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 16, 979
BstDEI CTNAG 2 cut(s) 767, 1125
BstF5I GGATG 4 cut(s) 52, 91, 176, 650
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 4 cut(s) 649, 766, 1252, 1333
BstMAI GTCTC 2 cut(s) 114, 826
BstMBI GATC 4 cut(s) 646, 763, 1249, 1330
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 2 cut(s) 255, 1256
BstSFI CTRYAG 2 cut(s) 872, 1388
BstSLI GKGCMC 1 cut(s) 1270
BstV1I GCAGC 2 cut(s) 66, 845
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 2 cut(s) 625, 760
BstYI RGATCY 1 cut(s) 763
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 1325
BtsCI GGATG 4 cut(s) 52, 91, 176, 650
BtsIMutI CAGTG 3 cut(s) 79, 612, 1122
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 2 cut(s) 16, 979
CciI TCATGA 1 cut(s) 1011
CfoI GCGC 1 cut(s) 1231
Cfr13I GGNCC 1 cut(s) 910
Csp6I GTAC 7 cut(s) 52, 144, 215, 235, 932, 987, 1278
CviAII CATG 9 cut(s) 290, 571, 829, 883, 898, 1012, 1178, 1274, 1334
CviQI GTAC 7 cut(s) 52, 144, 215, 235, 932, 987, 1278
DdeI CTNAG 2 cut(s) 767, 1125
DpnI GATC 4 cut(s) 648, 765, 1251, 1332
DpnII GATC 4 cut(s) 646, 763, 1249, 1330
DraI TTTAAA 1 cut(s) 1099
Eam1104I CTCTTC 3 cut(s) 996, 1296, 1314
EarI CTCTTC 3 cut(s) 996, 1296, 1314
Eco130I CCWWGG 1 cut(s) 346
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 1055
EcoRII CCWGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 9 cut(s) 293, 574, 832, 886, 901, 1015, 1181, 1277, 1337
FaqI GGGAC 1 cut(s) 735
FatI CATG 9 cut(s) 289, 570, 828, 882, 897, 1011, 1177, 1273, 1333
Fnu4HI GCNGC 2 cut(s) 80, 859
FokI GGATG 4 cut(s) 59, 98, 163, 637
Fsp4HI GCNGC 2 cut(s) 80, 859
FspBI CTAG 5 cut(s) 27, 369, 482, 1166, 1232
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 2 cut(s) 80, 859
GsuI CTGGAG 2 cut(s) 153, 573
HaeIII GGCC 1 cut(s) 1325
HapII CCGG 2 cut(s) 83, 1258
HhaI GCGC 1 cut(s) 1231
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 9 cut(s) 293, 574, 832, 886, 901, 1015, 1181, 1277, 1337
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 1204
HindII GTYRAC 1 cut(s) 1204
HindIII AAGCTT 1 cut(s) 1310
HinfI GANTC 9 cut(s) 69, 102, 388, 512, 703, 709, 824, 877, 963
HpaII CCGG 2 cut(s) 83, 1258
HphI GGTGA 2 cut(s) 701, 835
Hpy166II GTNNAC 6 cut(s) 64, 746, 816, 913, 1136, 1204
Hpy188I TCNGA 3 cut(s) 156, 496, 708
Hpy188III TCNNGA 6 cut(s) 353, 563, 593, 713, 946, 1012
Hpy8I GTNNAC 6 cut(s) 64, 746, 816, 913, 1136, 1204
HpyAV CCTTC 3 cut(s) 850, 1009, 1076
HpyCH4III ACNGT 3 cut(s) 214, 362, 1192
HpyCH4IV ACGT 2 cut(s) 488, 748
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 2 cut(s) 767, 1125
HpySE526I ACGT 2 cut(s) 488, 748
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 9 cut(s) 293, 574, 832, 886, 901, 1015, 1181, 1277, 1337
HspAI GCGC 1 cut(s) 1229
KpnI GGTACC 1 cut(s) 1281
Kzo9I GATC 4 cut(s) 646, 763, 1249, 1330
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 2 cut(s) 66, 845
LweI GCATC 6 cut(s) 37, 185, 190, 442, 706, 964
MaeI CTAG 5 cut(s) 27, 369, 482, 1166, 1232
MaeII ACGT 2 cut(s) 488, 748
MaeIII GTNAC 4 cut(s) 436, 547, 689, 1142
MalI GATC 4 cut(s) 648, 765, 1251, 1332
MboI GATC 4 cut(s) 646, 763, 1249, 1330
MboII GAAGA 5 cut(s) 518, 983, 1313, 1328, 1331
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 1 cut(s) 1270
MlyI GAGTC 2 cut(s) 871, 972
MmeI TCCRAC 2 cut(s) 408, 1032
MnlI CCTC 8 cut(s) 310, 502, 527, 784, 1015, 1029, 1297, 1315
MseI TTAA 4 cut(s) 543, 635, 1071, 1098
MslI CAYNNNNRTG 1 cut(s) 902
MspI CCGG 2 cut(s) 83, 1258
MspR9I CCNGG 2 cut(s) 257, 1258
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 1258
NdeII GATC 4 cut(s) 646, 763, 1249, 1330
NlaIII CATG 9 cut(s) 293, 574, 832, 886, 901, 1015, 1181, 1277, 1337
NlaIV GGNNCC 1 cut(s) 1279
NmuCI GTSAC 3 cut(s) 436, 547, 689
NspI RCATGY 1 cut(s) 574
PagI TCATGA 1 cut(s) 1011
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 7 cut(s) 69, 102, 388, 512, 703, 709, 824
PkrI GCNGC 2 cut(s) 81, 860
PleI GAGTC 2 cut(s) 871, 971
PpsI GAGTC 2 cut(s) 871, 971
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 1279
PspPI GGNCC 1 cut(s) 910
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 7 cut(s) 53, 145, 216, 236, 933, 988, 1279
RsaNI GTAC 7 cut(s) 52, 144, 215, 235, 932, 987, 1278
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 4 cut(s) 543, 635, 1071, 1098
SatI GCNGC 2 cut(s) 80, 859
Sau3AI GATC 4 cut(s) 646, 763, 1249, 1330
Sau96I GGNCC 1 cut(s) 910
ScaI AGTACT 1 cut(s) 988
SchI GAGTC 2 cut(s) 871, 972
ScrFI CCNGG 2 cut(s) 257, 1258
SduI GDGCHC 1 cut(s) 1270
SfaNI GCATC 6 cut(s) 37, 185, 190, 442, 706, 964
SfcI CTRYAG 2 cut(s) 872, 1388
SinI GGWCC 1 cut(s) 910
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 3 cut(s) 563, 662, 944
SmoI CTYRAG 3 cut(s) 563, 662, 944
SpeI ACTAGT 1 cut(s) 368
SspMI CTAG 5 cut(s) 27, 369, 482, 1166, 1232
StyD4I CCNGG 2 cut(s) 255, 1256
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 3 cut(s) 214, 362, 1192
TaiI ACGT 2 cut(s) 491, 751
TaqI TCGA 1 cut(s) 645
TatI WGTACW 3 cut(s) 234, 931, 986
TfiI GAWTC 7 cut(s) 69, 102, 388, 512, 703, 709, 824
Tru1I TTAA 4 cut(s) 543, 635, 1071, 1098
Tru9I TTAA 4 cut(s) 543, 635, 1071, 1098
TscAI CASTG 3 cut(s) 79, 612, 1129
TseFI GTSAC 3 cut(s) 436, 547, 689
TseI GCWGC 2 cut(s) 79, 858
Tsp45I GTSAC 3 cut(s) 436, 547, 689
TspDTI ATGAA 7 cut(s) 102, 222, 416, 518, 837, 1000, 1028
TspRI CASTG 3 cut(s) 79, 612, 1129
VpaK11BI GGWCC 1 cut(s) 910
XapI RAATTY 5 cut(s) 90, 922, 949, 1055, 1376
XceI RCATGY 1 cut(s) 574
XspI CTAG 5 cut(s) 27, 369, 482, 1166, 1232
ZraI GACGTC 1 cut(s) 749
ZrmI AGTACT 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.