Rh5AG402300

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
69615671 .. 69618205
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG402300.1

Sequence Viewer

Length: 1254 bp
ATGGAGAATGGCTCCCTCTCCCACACCGGTGAATCCCAAATCATATCATCTGATTCCAGTGGCAGACGCGGTGGTTGGATCACTTTCCCCTTCATCATCGGGGCTATAATAGGCTTATCACTTGCAGTGGGAGGATGGCTCTCAAATTTGATAGTATTTCTCATTCAAGAATTCAATGTGAAGAGTATTGATGCTGCTCAGATTGCAAACGTGGTTAACGGTTTTTCCAGCTTTTTCCCAGTCATTGGAGCAATTATAGCAGACTCTTTCTTTGGCCCTTTCTTGGTCATCTCCATTTCTTCCTGCATTTCCTTGCTGGGTATTGTTTTTTTGGCATTAACTGCTATATTTGATTCGTTAAAGCCTCAACCTTGTTTAATCGGATCAGAAATGTGCCAGCCAACCTCAACTCTGCAATATACAATCTTGTATACGGGTATAGCTTTGGCATCAATTGGCTTGGGAGGTACACGCTTTACCCTAGCAACAATGGGAGCTAATCAATTGGATAAGCCTAAAAATCAGGCAACTTTCTTTAACTGGTACTTCATTGGCATATACTCTGCTTCAACTGTAGCTCTAACTGTCATCGTGTACATAGAGGACAGTGTGGGATTTAAATGGGGTTTTGGCCTAGCTGTTGCTGCCAATGTTATTGGCTTGGCCATTTTCTTATCTGGAACCCGTTTCTACCATTTTAATAAGCCTCAAGGGAGTCCATTTGTCGGTTTAGCTCGTGTCATTGTTGCTACTACCTGGAAAAGGAATCTCCAACTCTCATCTGAAAGCAAGGATTATTGTTACTATGGGCATGAGGGAGTGACCAACAGGGTGGCTACAACACCAAGCAGGAGCTTCAGTTTCCTTAACCGTTCAGCACAGAAAGCTGAAGGAGACATCAAACCAGACGGGACAATTGCAAAGCCATGGAGATTATGCACAGTTCAACAAGTAGAAGATTTCAAGACCCTTATAAGAATAATGCCATTATGGTCAACAAGCATATTCTTAGGTACCCCAATTGGAATCCAAGGCAGCTTGACTATCTTGCAGGCTCTAACCATGGACCGTCACCTAGGGCCTCATTTTCAAATACCAGCTGGGTCTGTTGTAGTCGTCATTCTAATTTCCAGTATCATCTTTCTAGCCCTCATTGATAGGTTATTATGTCCCATATGGAAGAAGTTAACTGGTCATTTTCTGACACCACTACTAGAGAAAACCCATTCAGAGACAAATTTATTTTGTCTCTAA

Protein Analysis

417

Amino Acids

45.34

Weight (kDa)

8.78

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 95 - 403 1.9e-44 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
Acc65I GGTACC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 1013
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 1 cut(s) 431
AccII CGCG 1 cut(s) 69
AciI CCGC 1 cut(s) 69
AclWI GGATC 2 cut(s) 86, 391
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 3 cut(s) 145, 170, 1237
AcuI CTGAAG 2 cut(s) 841, 909
AfaI GTAC 4 cut(s) 469, 545, 596, 1015
AfiI CCNNNNNNNGG 4 cut(s) 245, 283, 725, 762
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 6 cut(s) 167, 175, 570, 947, 964, 1091
AjnI CCWGG 1 cut(s) 755
AleI CACNNNNGTG 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 888, 1226
AlwI GGATC 2 cut(s) 86, 391
AoxI GGCC 4 cut(s) 274, 631, 663, 1079
ApeKI GCWGC 3 cut(s) 194, 644, 1035
ApoI RAATTY 3 cut(s) 145, 170, 1237
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsiGI ACCGGT 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 1013
AspA2I CCTAGG 1 cut(s) 1075
AspS9I GGNCC 3 cut(s) 275, 1066, 1079
AsuHPI GGTGA 2 cut(s) 41, 1064
AvaII GGWCC 1 cut(s) 1066
AvrII CCTAGG 1 cut(s) 1075
BalI TGGCCA 1 cut(s) 665
BanI GGYRCC 1 cut(s) 1013
BauI CACGAG 1 cut(s) 735
BbvI GCAGC 3 cut(s) 181, 631, 1047
BccI CCATC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 757
BcoDI GTCTC 2 cut(s) 888, 1226
BfaI CTAG 5 cut(s) 482, 635, 1076, 1145, 1214
BfmI CTRYAG 1 cut(s) 573
BisI GCNGC 3 cut(s) 195, 645, 1036
BlnI CCTAGG 1 cut(s) 1075
BlsI GCNGC 3 cut(s) 196, 646, 1037
Bme1390I CCNGG 1 cut(s) 757
Bme18I GGWCC 1 cut(s) 1066
BmgT120I GGNCC 3 cut(s) 275, 1066, 1079
BmiI GGNNCC 3 cut(s) 13, 682, 1015
BmrFI CCNGG 1 cut(s) 757
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 181, 458
BmuI ACTGGG 1 cut(s) 233
BplI GAGNNNNNCTC 3 cut(s) 28, 123, 155
BpuEI CTTGAG 1 cut(s) 693
BsaJI CCNNGG 4 cut(s) 926, 1030, 1062, 1075
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 283, 725, 762
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 5 cut(s) 57, 239, 545, 1131, 1195
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 4 cut(s) 926, 1030, 1062, 1075
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 4 cut(s) 245, 283, 725, 762
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 5 cut(s) 57, 239, 545, 1131, 1195
BseXI GCAGC 3 cut(s) 181, 631, 1047
BseYI CCCAGC 2 cut(s) 316, 1100
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 4 cut(s) 276, 633, 665, 1081
BshNI GGYRCC 1 cut(s) 1013
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 925, 1155
BslI CCNNNNNNNGG 4 cut(s) 245, 283, 725, 762
BsmAI GTCTC 2 cut(s) 888, 1226
BsmFI GGGAC 2 cut(s) 925, 1155
BsnI GGCC 4 cut(s) 276, 633, 665, 1081
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 2 cut(s) 78, 383
Bsp19I CCATGG 2 cut(s) 926, 1062
BspACI CCGC 1 cut(s) 69
BspANI GGCC 4 cut(s) 276, 633, 665, 1081
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 13, 682, 1015
BspPI GGATC 2 cut(s) 86, 391
BspT107I GGYRCC 1 cut(s) 1013
BsrFI RCCGGY 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 5 cut(s) 57, 239, 545, 1131, 1195
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 4 cut(s) 926, 1030, 1062, 1075
BssMI GATC 2 cut(s) 78, 383
BssNAI GTATAC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 735
BssT1I CCWWGG 4 cut(s) 926, 1030, 1062, 1075
Bst1107I GTATAC 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 7 cut(s) 221, 574, 586, 608, 872, 943, 1070
Bst6I CTCTTC 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 398, 1053
BstDEI CTNAG 2 cut(s) 198, 1009
BstDSI CCRYGG 2 cut(s) 926, 1062
BstENI CCTNNNNNAGG 1 cut(s) 760
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 2 cut(s) 81, 386
BstMAI GTCTC 2 cut(s) 888, 1226
BstMBI GATC 2 cut(s) 78, 383
BstMWI GCNNNNNNNGC 5 cut(s) 203, 257, 341, 644, 884
BstNI CCWGG 1 cut(s) 757
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 1 cut(s) 573
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 181, 631, 1047
BstXI CCANNNNNNTGG 1 cut(s) 832
BstZ17I GTATAC 1 cut(s) 432
BsuRI GGCC 4 cut(s) 276, 633, 665, 1081
BtgI CCRYGG 2 cut(s) 926, 1062
BtsCI GGATG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 64, 132, 613
Cac8I GCNNGC 2 cut(s) 398, 1053
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 275, 1066, 1079
CseI GACGC 1 cut(s) 75
Csp6I GTAC 4 cut(s) 468, 544, 595, 1014
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 3 cut(s) 812, 927, 1063
CviQI GTAC 4 cut(s) 468, 544, 595, 1014
DdeI CTNAG 2 cut(s) 198, 1009
DpnI GATC 2 cut(s) 80, 385
DpnII GATC 2 cut(s) 78, 383
DraI TTTAAA 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 4 cut(s) 926, 1030, 1062, 1075
Eco47I GGWCC 1 cut(s) 1066
Eco57I CTGAAG 2 cut(s) 841, 909
EcoNI CCTNNNNNAGG 1 cut(s) 760
EcoO109I RGGNCCY 1 cut(s) 1079
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 755
EcoT14I CCWWGG 4 cut(s) 926, 1030, 1062, 1075
ErhI CCWWGG 4 cut(s) 926, 1030, 1062, 1075
FaeI CATG 3 cut(s) 815, 930, 1066
FaqI GGGAC 2 cut(s) 925, 1155
FatI CATG 3 cut(s) 811, 926, 1062
FauNDI CATATG 1 cut(s) 1175
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 3 cut(s) 195, 645, 1036
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 195, 645, 1036
FspBI CTAG 5 cut(s) 482, 635, 1076, 1145, 1214
GluI GCNGC 3 cut(s) 195, 645, 1036
GsaI CCCAGC 2 cut(s) 320, 1104
HaeIII GGCC 4 cut(s) 276, 633, 665, 1081
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 815, 930, 1066
HincII GTYRAC 3 cut(s) 217, 996, 1188
HindII GTYRAC 3 cut(s) 217, 996, 1188
HinfI GANTC 7 cut(s) 32, 53, 263, 353, 715, 766, 1026
HpaI GTTAAC 2 cut(s) 217, 1188
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 41, 1064
Hpy166II GTNNAC 6 cut(s) 217, 432, 470, 595, 996, 1188
Hpy188I TCNGA 7 cut(s) 52, 201, 383, 388, 784, 1203, 1231
Hpy188III TCNNGA 3 cut(s) 167, 678, 964
Hpy8I GTNNAC 6 cut(s) 217, 432, 470, 595, 996, 1188
HpyAV CCTTC 2 cut(s) 100, 884
HpyCH4III ACNGT 7 cut(s) 221, 574, 586, 608, 872, 943, 1070
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 7 cut(s) 125, 206, 306, 415, 920, 939, 1051
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 257, 341, 644, 884
HpyF3I CTNAG 2 cut(s) 198, 1009
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 3 cut(s) 815, 930, 1066
KpnI GGTACC 1 cut(s) 1017
KspAI GTTAAC 2 cut(s) 217, 1188
Kzo9I GATC 2 cut(s) 78, 383
LmnI GCTCC 4 cut(s) 17, 248, 494, 852
Lsp1109I GCAGC 3 cut(s) 181, 631, 1047
LweI GCATC 2 cut(s) 181, 458
MaeI CTAG 5 cut(s) 482, 635, 1076, 1145, 1214
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 800, 820, 1070
MalI GATC 2 cut(s) 80, 385
MboI GATC 2 cut(s) 78, 383
MboII GAAGA 4 cut(s) 193, 291, 968, 1192
MfeI CAATTG 4 cut(s) 453, 503, 915, 1020
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 9 cut(s) 145, 170, 252, 453, 503, 915, 1020, 1125, 1237
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 2 cut(s) 257, 724
MmeI TCCRAC 2 cut(s) 56, 796
Mox20I TGGCCA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 665
MseI TTAA 9 cut(s) 216, 338, 359, 377, 537, 618, 699, 867, 1187
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 757
MunI CAATTG 4 cut(s) 453, 503, 915, 1020
MvaI CCWGG 1 cut(s) 757
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 5 cut(s) 203, 257, 341, 644, 884
NcoI CCATGG 2 cut(s) 926, 1062
NdeI CATATG 1 cut(s) 1175
NdeII GATC 2 cut(s) 78, 383
NlaIII CATG 3 cut(s) 815, 930, 1066
NlaIV GGNNCC 3 cut(s) 13, 682, 1015
NmuCI GTSAC 2 cut(s) 820, 1070
OliI CACNNNNGTG 1 cut(s) 27
PfeI GAWTC 5 cut(s) 32, 53, 353, 766, 1026
PflMI CCANNNNNTGG 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 3 cut(s) 196, 646, 1037
PleI GAGTC 2 cut(s) 257, 723
PpsI GAGTC 2 cut(s) 257, 723
PsiI TTATAA 1 cut(s) 974
Psp6I CCWGG 1 cut(s) 755
PspFI CCCAGC 2 cut(s) 316, 1100
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 3 cut(s) 13, 682, 1015
PspPI GGNCC 3 cut(s) 275, 1066, 1079
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 4 cut(s) 469, 545, 596, 1015
RsaNI GTAC 4 cut(s) 468, 544, 595, 1014
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 9 cut(s) 216, 338, 359, 377, 537, 618, 699, 867, 1187
SatI GCNGC 3 cut(s) 195, 645, 1036
Sau3AI GATC 2 cut(s) 78, 383
Sau96I GGNCC 3 cut(s) 275, 1066, 1079
SchI GAGTC 2 cut(s) 257, 724
ScrFI CCNGG 1 cut(s) 757
SfaNI GCATC 2 cut(s) 181, 458
SfcI CTRYAG 1 cut(s) 573
SgrAI CRCCGGYG 1 cut(s) 26
SinI GGWCC 1 cut(s) 1066
SmiI ATTTAAAT 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 708
SmoI CTYRAG 1 cut(s) 708
Sse9I AATT 9 cut(s) 145, 170, 252, 453, 503, 915, 1020, 1125, 1237
SsiI CCGC 1 cut(s) 69
SspMI CTAG 5 cut(s) 482, 635, 1076, 1145, 1214
StyD4I CCNGG 1 cut(s) 755
StyI CCWWGG 4 cut(s) 926, 1030, 1062, 1075
SwaI ATTTAAAT 1 cut(s) 619
TaaI ACNGT 7 cut(s) 221, 574, 586, 608, 872, 943, 1070
TaiI ACGT 1 cut(s) 213
TasI AATT 9 cut(s) 145, 170, 252, 453, 503, 915, 1020, 1125, 1237
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 5 cut(s) 32, 53, 353, 766, 1026
Tru1I TTAA 9 cut(s) 216, 338, 359, 377, 537, 618, 699, 867, 1187
Tru9I TTAA 9 cut(s) 216, 338, 359, 377, 537, 618, 699, 867, 1187
TscAI CASTG 3 cut(s) 64, 132, 613
TseFI GTSAC 2 cut(s) 820, 1070
TseI GCWGC 3 cut(s) 194, 644, 1035
Tsp45I GTSAC 2 cut(s) 820, 1070
TspDTI ATGAA 2 cut(s) 82, 538
TspRI CASTG 3 cut(s) 64, 132, 613
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 1066
XagI CCTNNNNNAGG 1 cut(s) 760
XapI RAATTY 3 cut(s) 145, 170, 1237
XmaJI CCTAGG 1 cut(s) 1075
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 5 cut(s) 482, 635, 1076, 1145, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.