Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003643.1

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

14271 .. 15499

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003643.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgggagctaatcaattggataagcctaaaaatcaagcaactttctttaactggtacttcattggcatatactttgctttaaccgtagctctaactgccatcgtgtacatagaggacaatgtgggttttaaatggggttttggcctagctgttgctggcaatgttattggcttggtcattttcttatctggaacccgtttctaccattttaataagcctcaagggagtccatttgtgggtttagctcgtgtcattgttgctaccacctggaaaaggaatctccaactctcatctgaaagcaaggattattgttactatgggcatgagggagtgaccaacagggtggctacaacaccaagcaggagcttcagtttccttaaccgtgcagcacagaaagctgaaggagacatcaaaccagacgggacaattgcaaagccatggagattatgcacagttcaacaagctctaaccatggaccgtcacctagggcctcattttcaaataccagctgggtctgttgtagccgtcattctaatttccggtgtcatctttctcgccctcattgataggttactatgtcccatatggaagaagttaactggtcattttctgacacccctccaacgtataggattaggccacgtgctaaacgtgttcgccatggcagtttcagcactggtagagtctaaaaggcttaaaatttcccaagaccatcctggtgcaactactgtccccatgctggcattgtggctcttcccacaattggttttggttggcgttggagaggcatttcattttccaggacaagtttctttgtattaccaagaatttccttcgtcgctgaaaagcacagcaacagcgatgatctcgttggttatcgggattgcattttatttagggacaggtttgattaatctggttcagagggttacaagatggctaccagacaacataaacaatgggaggctagagaacgtgtattggatgctagttgtaattggagtggtaaactttggttattatttagtctgtgccaagctgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

348

Amino Acids

38.58

Weight (kDa)

9.57

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	699, 827
AcuI	CTGAAG	2 cut(s)	352, 420
AcvI	CACGTG	1 cut(s)	643
AfaI	GTAC	3 cut(s)	56, 107, 1043
AfiI	CCNNNNNNNGG	4 cut(s)	236, 273, 739, 763
AflIII	ACRYGT	2 cut(s)	651, 975
AgsI	TTSAA	2 cut(s)	458, 500
AjnI	CCWGG	3 cut(s)	266, 715, 799
AluBI	AGCT	9 cut(s)	8, 89, 149, 245, 366, 398, 464, 509, 1039
AluI	AGCT	9 cut(s)	8, 89, 149, 245, 366, 398, 464, 509, 1039
Alw26I	GTCTC	1 cut(s)	399
AoxI	GGCC	3 cut(s)	142, 488, 637
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	699, 827
AseI	ATTAAT	1 cut(s)	912
AspA2I	CCTAGG	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	475, 488
AsuHPI	GGTGA	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	475
AvrII	CCTAGG	1 cut(s)	484
BauI	CACGAG	1 cut(s)	246
BbrPI	CACGTG	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	3 cut(s)	107, 720, 930
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	3 cut(s)	268, 717, 801
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	5 cut(s)	146, 485, 968, 989, 1045
BisI	GCNGC	1 cut(s)	387
BlnI	CCTAGG	1 cut(s)	484
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	3 cut(s)	268, 717, 801
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	475, 488
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	3 cut(s)	268, 717, 801
BmsI	GCATC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	643
BsaJI	CCNNGG	4 cut(s)	437, 471, 484, 660
BsaWI	WCCGGW	1 cut(s)	539
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 273, 739, 763
Bse1I	ACTGG	3 cut(s)	56, 604, 681
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	3 cut(s)	268, 717, 801
BseDI	CCNNGG	4 cut(s)	437, 471, 484, 660
BseGI	GGATG	2 cut(s)	712, 990
BseLI	CCNNNNNNNGG	4 cut(s)	236, 273, 739, 763
BseMI	GCAATG	1 cut(s)	166
BseNI	ACTGG	3 cut(s)	56, 604, 681
BseXI	GCAGC	1 cut(s)	398
BseYI	CCCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	144, 490, 639
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	4 cut(s)	436, 564, 716, 913
BslI	CCNNNNNNNGG	4 cut(s)	236, 273, 739, 763
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	4 cut(s)	436, 564, 716, 913
BsnI	GGCC	3 cut(s)	144, 490, 639
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	864
Bsp19I	CCATGG	3 cut(s)	437, 471, 660
BspANI	GGCC	3 cut(s)	144, 490, 639
BspLI	GGNNCC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	56, 604, 681
BssECI	CCNNGG	4 cut(s)	437, 471, 484, 660
BssMI	GATC	1 cut(s)	864
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	4 cut(s)	437, 471, 484, 660
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	268, 717, 801
Bst4CI	ACNGT	5 cut(s)	85, 383, 454, 479, 730
Bst6I	CTCTTC	1 cut(s)	758
BstAUI	TGTACA	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	157, 741
BstDSI	CCRYGG	3 cut(s)	437, 471, 660
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	712, 990
BstKTI	GATC	1 cut(s)	867
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	864
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 395, 671
BstNI	CCWGG	3 cut(s)	268, 717, 801
BstSCI	CCNGG	3 cut(s)	266, 715, 799
BstV1I	GCAGC	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	144, 490, 639
BtgI	CCRYGG	3 cut(s)	437, 471, 660
BtgZI	GCGATG	1 cut(s)	875
BtsCI	GGATG	2 cut(s)	712, 990
BtsIMutI	CAGTG	1 cut(s)	674
Cac8I	GCNNGC	2 cut(s)	157, 741
Cfr13I	GGNCC	2 cut(s)	475, 488
Csp6I	GTAC	3 cut(s)	55, 106, 1042
CviAII	CATG	5 cut(s)	323, 438, 472, 661, 736
CviQI	GTAC	3 cut(s)	55, 106, 1042
DpnI	GATC	1 cut(s)	866
DpnII	GATC	1 cut(s)	864
DraI	TTTAAA	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	758
EarI	CTCTTC	1 cut(s)	758
Eco130I	CCWWGG	4 cut(s)	437, 471, 484, 660
Eco47I	GGWCC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	352, 420
Eco72I	CACGTG	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRII	CCWGG	3 cut(s)	266, 715, 799
EcoT14I	CCWWGG	4 cut(s)	437, 471, 484, 660
ErhI	CCWWGG	4 cut(s)	437, 471, 484, 660
FaeI	CATG	5 cut(s)	326, 441, 475, 664, 739
FaqI	GGGAC	4 cut(s)	436, 564, 716, 913
FatI	CATG	5 cut(s)	322, 437, 471, 660, 735
FauNDI	CATATG	1 cut(s)	584
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	2 cut(s)	699, 997
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	5 cut(s)	146, 485, 968, 989, 1045
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	513
HaeIII	GGCC	3 cut(s)	144, 490, 639
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	5 cut(s)	326, 441, 475, 664, 739
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HinfI	GANTC	3 cut(s)	226, 277, 683
HpaI	GTTAAC	1 cut(s)	597
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	3 cut(s)	106, 597, 1009
Hpy188I	TCNGA	3 cut(s)	295, 612, 924
Hpy188III	TCNNGA	2 cut(s)	189, 880
Hpy8I	GTNNAC	3 cut(s)	106, 597, 1009
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	2 cut(s)	395, 843
HpyCH4III	ACNGT	5 cut(s)	85, 383, 454, 479, 730
HpyCH4IV	ACGT	4 cut(s)	625, 642, 651, 975
HpyCH4V	TGCA	5 cut(s)	386, 431, 450, 722, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 395, 671
HpySE526I	ACGT	4 cut(s)	625, 642, 651, 975
Hsp92II	CATG	5 cut(s)	326, 441, 475, 664, 739
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	1 cut(s)	864
LguI	GCTCTTC	1 cut(s)	758
LmnI	GCTCC	2 cut(s)	5, 363
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	975
MaeI	CTAG	5 cut(s)	146, 485, 968, 989, 1045
MaeII	ACGT	4 cut(s)	625, 642, 651, 975
MaeIII	GTNAC	5 cut(s)	311, 331, 479, 570, 928
MalI	GATC	1 cut(s)	866
MboI	GATC	1 cut(s)	864
MboII	GAAGA	2 cut(s)	601, 745
MfeI	CAATTG	3 cut(s)	14, 426, 761
MluCI	AATT	7 cut(s)	14, 426, 534, 699, 761, 827, 996
MlyI	GAGTC	2 cut(s)	235, 692
MmeI	TCCRAC	3 cut(s)	307, 646, 760
MnlI	CCTC	9 cut(s)	106, 228, 319, 501, 569, 629, 778, 918, 957
MseI	TTAA	8 cut(s)	48, 80, 129, 210, 378, 596, 696, 912
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	3 cut(s)	268, 717, 801
MunI	CAATTG	3 cut(s)	14, 426, 761
MvaI	CCWGG	3 cut(s)	268, 717, 801
MwoI	GCNNNNNNNGC	3 cut(s)	95, 395, 671
NcoI	CCATGG	3 cut(s)	437, 471, 660
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	1 cut(s)	864
NlaIII	CATG	5 cut(s)	326, 441, 475, 664, 739
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	331, 479
PciSI	GCTCTTC	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	234, 691
PmaCI	CACGTG	1 cut(s)	643
PmlI	CACGTG	1 cut(s)	643
PpsI	GAGTC	2 cut(s)	234, 691
Ppu21I	YACGTR	1 cut(s)	643
PshBI	ATTAAT	1 cut(s)	912
Psp6I	CCWGG	3 cut(s)	266, 715, 799
PspCI	CACGTG	1 cut(s)	643
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	3 cut(s)	266, 715, 799
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	475, 488
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	3 cut(s)	56, 107, 1043
RsaNI	GTAC	3 cut(s)	55, 106, 1042
RseI	CAYNNNNRTG	1 cut(s)	717
SapI	GCTCTTC	1 cut(s)	758
SaqAI	TTAA	8 cut(s)	48, 80, 129, 210, 378, 596, 696, 912
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	864
Sau96I	GGNCC	2 cut(s)	475, 488
SchI	GAGTC	2 cut(s)	235, 692
ScrFI	CCNGG	3 cut(s)	268, 717, 801
SfaNI	GCATC	1 cut(s)	975
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	7 cut(s)	14, 426, 534, 699, 761, 827, 996
SspMI	CTAG	5 cut(s)	146, 485, 968, 989, 1045
StyD4I	CCNGG	3 cut(s)	266, 715, 799
StyI	CCWWGG	4 cut(s)	437, 471, 484, 660
TaaI	ACNGT	5 cut(s)	85, 383, 454, 479, 730
TaiI	ACGT	4 cut(s)	628, 645, 654, 978
TasI	AATT	7 cut(s)	14, 426, 534, 699, 761, 827, 996
TatI	WGTACW	2 cut(s)	105, 1041
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	8 cut(s)	48, 80, 129, 210, 378, 596, 696, 912
Tru9I	TTAA	8 cut(s)	48, 80, 129, 210, 378, 596, 696, 912
TscAI	CASTG	1 cut(s)	681
TseFI	GTSAC	2 cut(s)	331, 479
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	331, 479
TspDTI	ATGAA	2 cut(s)	49, 782
TspRI	CASTG	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	912
XagI	CCTNNNNNAGG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	699, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmaJI	CCTAGG	1 cut(s)	484
XspI	CTAG	5 cut(s)	146, 485, 968, 989, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.