Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8497605.1

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

2198 .. 2746

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8497605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgttaaccctaatagcaactatcccttccttgaggccttcatcgtgttcaattagcactctcatcgcatgtgaagctccatcaaagtttcactacttagtcctatatgcagcattatcactagcttcactaggacttggaggcacccgcttcacaattgcaaccatgggagcagaccaattcaacaatccgaatgatcaaggggttttctttaattggtattttttggctttgtatatgtccagtgtcttcagcggcactgccatcatatatattcaggacaacgtgggatggggattagggtttggaatatgctgcattgctaatggtgttggattgggggcgttcttactggggaaacgattttataagcaggtaaaaccaaaagggagtccattcttgagcatagcacgagtattggttgcagcaattcggaagaggaagatgtcatcagaaacttcaacagagcctgattactattatggcgcaggagcgatgactgacaatccaccaactaaaagtttcaggtatgatattttaatttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

182

Amino Acids

19.84

Weight (kDa)

9.19

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	2 cut(s)	148, 255
AcuI	CTGAAG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	51, 184, 462
AluBI	AGCT	2 cut(s)	77, 125
AluI	AGCT	2 cut(s)	77, 125
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	3 cut(s)	110, 315, 425
AspLEI	GCGC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	122, 302, 437
BccI	CCATC	3 cut(s)	88, 272, 285
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	2 cut(s)	122, 131
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	4 cut(s)	111, 256, 316, 426
BlsI	GCNGC	4 cut(s)	112, 257, 317, 427
BmiI	GGNNCC	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	2 cut(s)	52, 421
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	243, 357
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	243, 357
BseXI	GCAGC	3 cut(s)	122, 302, 437
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	2 cut(s)	148, 255
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	243, 357
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	431
BstDEI	CTNAG	1 cut(s)	97
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	122, 302, 437
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	2 cut(s)	49, 509
BtsCI	GGATG	1 cut(s)	296
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	250, 258
BveI	ACCTGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	488
CviAII	CATG	2 cut(s)	69, 166
CviJI	RGCY	5 cut(s)	37, 77, 125, 230, 469
CviKI_1	RGCY	5 cut(s)	37, 77, 125, 230, 469
DdeI	CTNAG	1 cut(s)	97
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	72, 169
FatI	CATG	2 cut(s)	68, 165
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	111, 256, 316, 426
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	111, 256, 316, 426
FspBI	CTAG	2 cut(s)	122, 131
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	4 cut(s)	111, 256, 316, 426
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	72, 169
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	391
HpaI	GTTAAC	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	192, 435, 454
Hpy188III	TCNNGA	2 cut(s)	278, 400
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	36, 48
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	110, 161, 318, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	97
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	72, 169
HspAI	GCGC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	3 cut(s)	82, 170, 491
LpnPI	CCDG	7 cut(s)	256, 263, 338, 359, 474, 483, 511
Lsp1109I	GCAGC	3 cut(s)	122, 302, 437
MaeI	CTAG	2 cut(s)	122, 131
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	241, 448, 454
MfeI	CAATTG	1 cut(s)	156
MluCI	AATT	6 cut(s)	51, 156, 179, 214, 429, 540
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	3 cut(s)	27, 134, 432
MseI	TTAA	3 cut(s)	5, 213, 539
MspA1I	CMGCKG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	72, 169
NlaIV	GGNNCC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	112, 257, 317, 427
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	470
SaqAI	TTAA	3 cut(s)	5, 213, 539
SatI	GCNGC	4 cut(s)	111, 256, 316, 426
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	400
SetI	ASST	5 cut(s)	79, 127, 288, 378, 530
SmlI	CTYRAG	2 cut(s)	31, 400
SmoI	CTYRAG	2 cut(s)	31, 400
Sse9I	AATT	6 cut(s)	51, 156, 179, 214, 429, 540
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	148, 255
SspMI	CTAG	2 cut(s)	122, 131
StuI	AGGCCT	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	288
TasI	AATT	6 cut(s)	51, 156, 179, 214, 429, 540
TauI	GCSGC	1 cut(s)	258
Tru1I	TTAA	3 cut(s)	5, 213, 539
Tru9I	TTAA	3 cut(s)	5, 213, 539
TscAI	CASTG	2 cut(s)	250, 265
TseI	GCWGC	3 cut(s)	110, 315, 425
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	250, 265
XceI	RCATGY	1 cut(s)	72
XspI	CTAG	2 cut(s)	122, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.