Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

55649633 .. 55650247

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG322700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATAGACACTTTGGTCCACACTTCAAAATCCCTGCTGCTTCATTCCTAGTGTTTAACCTTTTAGCCACAGCCATCTCCATCTTCATAATTGAACGCTTCAAACTCCTCAAGTACAAGAACCTCACTGGACGAACTCTAACACCGATCCAGCGTATAGGGATCGGACACATCATAAACATTATTTCCCTAATTGGGTCTGCCTTAATCGAAAGAAGACGACTTGGAGTGGTAAGAGCACATAGCCTCACGAACCAACCTGGTTCAGAGGTGCCCATGTCCGCCCTTTGGCTTGTGGCACCACTGTCGGTTATGGGAATCGCTGAGGCATTTCATTTCCCAGGACAAGTTTCATTGTGCTATCAAGAATTTCCAAAATCATTGAGAAGTACCTCCACTGCTATGATCTCATTGTTGATTGGAATCGGGTATTATCTTAGCACTGCAGTCACTGATTTGGTAGACAAGACCACAAAGTGGTTACCAGATGATATAAATCAAGGGAGGTTGGATAATATGTTTTGGATGTTGGTAGTGTTTGGGGTGGTGAATTTTGGTTACTTCATAACTTGTGCTAAGTTCTTTGTGTATCAAAACCAAAATATAGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

204

Amino Acids

22.87

Weight (kDa)

9.73

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 159	2.7e-20	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	15
AccB1I	GGYRCC	2 cut(s)	271, 298
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccI	GTMKAC	1 cut(s)	462
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	142, 170
AcsI	RAATTY	2 cut(s)	368, 550
AdeI	CACNNNGTG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	116, 391
AfiI	CCNNNNNNNGG	3 cut(s)	195, 288, 477
AgsI	TTSAA	3 cut(s)	28, 95, 103
AjnI	CCWGG	2 cut(s)	259, 340
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	142, 170
AlwNI	CAGNNNCTG	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	368, 550
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	2 cut(s)	271, 298
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	83, 89
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	2 cut(s)	261, 342
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	261, 342
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	273, 300
BmrFI	CCNGG	2 cut(s)	261, 342
BpiI	GAAGAC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	2 cut(s)	422, 495
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 288, 477
Bse1I	ACTGG	1 cut(s)	133
Bse8I	GATNNNNATC	2 cut(s)	422, 495
BseBI	CCWGG	2 cut(s)	261, 342
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	531
BseJI	GATNNNNATC	2 cut(s)	422, 495
BseLI	CCNNNNNNNGG	3 cut(s)	195, 288, 477
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	25
BshNI	GGYRCC	2 cut(s)	271, 298
BsiHKAI	GWGCWC	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	195, 288, 477
Bsp1286I	GDGCHC	2 cut(s)	241, 276
Bsp143I	GATC	3 cut(s)	147, 162, 405
BspACI	CCGC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	273, 300
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	142, 170
BspT107I	GGYRCC	2 cut(s)	271, 298
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	147, 162, 405
Bst2UI	CCWGG	2 cut(s)	261, 342
Bst4CI	ACNGT	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	324, 437, 576
BstEII	GGTNACC	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	531
BstKTI	GATC	3 cut(s)	150, 165, 408
BstMBI	GATC	3 cut(s)	147, 162, 405
BstNI	CCWGG	2 cut(s)	261, 342
BstPI	GGTNACC	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	259, 340
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	531
BtsI	GCAGTG	2 cut(s)	396, 441
BtsIMutI	CAGTG	5 cut(s)	126, 302, 396, 441, 450
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	17
CsiI	ACCWGGT	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	115, 390
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	4 cut(s)	68, 74, 246, 292
CviKI_1	RGCY	4 cut(s)	68, 74, 246, 292
CviQI	GTAC	2 cut(s)	115, 390
DdeI	CTNAG	3 cut(s)	324, 437, 576
DpnI	GATC	3 cut(s)	149, 164, 407
DpnII	GATC	3 cut(s)	147, 162, 405
DraIII	CACNNNGTG	1 cut(s)	477
DrdI	GACNNNNNNGTC	1 cut(s)	15
DseDI	GACNNNNNNGTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	480
EcoO65I	GGTNACC	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	259, 340
FaeI	CATG	1 cut(s)	280
FatI	CATG	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	280
HinfI	GANTC	2 cut(s)	318, 423
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	20, 463
Hpy188I	TCNGA	2 cut(s)	167, 268
Hpy188III	TCNNGA	2 cut(s)	250, 365
Hpy8I	GTNNAC	2 cut(s)	20, 463
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	324, 437, 576
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	147, 162, 405
LpnPI	CCDG	8 cut(s)	48, 114, 164, 246, 273, 327, 354, 498
Lsp1109I	GCAGC	1 cut(s)	25
MabI	ACCWGGT	1 cut(s)	259
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	3 cut(s)	448, 480, 557
MalI	GATC	3 cut(s)	149, 164, 407
MboI	GATC	3 cut(s)	147, 162, 405
MboII	GAAGA	2 cut(s)	76, 228
MhlI	GDGCHC	2 cut(s)	241, 276
MluCI	AATT	4 cut(s)	90, 192, 368, 550
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	7 cut(s)	119, 134, 257, 262, 319, 403, 498
MseI	TTAA	2 cut(s)	57, 206
MslI	CAYNNNNRTG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	261, 342
MvaI	CCWGG	2 cut(s)	261, 342
NdeII	GATC	3 cut(s)	147, 162, 405
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	273, 300
NmuCI	GTSAC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	318, 423
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	259, 340
PspEI	GGTNACC	1 cut(s)	480
PspGI	CCWGG	2 cut(s)	259, 340
PspN4I	GGNNCC	2 cut(s)	273, 300
PspPI	GGNCC	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	116, 391
RsaNI	GTAC	2 cut(s)	115, 390
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	57, 206
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	147, 162, 405
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	261, 342
SduI	GDGCHC	2 cut(s)	241, 276
SetI	ASST	6 cut(s)	63, 126, 262, 273, 395, 509
SexAI	ACCWGGT	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	90, 192, 368, 550
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	259, 340
TaaI	ACNGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	210
TasI	AATT	4 cut(s)	90, 192, 368, 550
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	318, 423
Tru1I	TTAA	2 cut(s)	57, 206
Tru9I	TTAA	2 cut(s)	57, 206
TscAI	CASTG	5 cut(s)	133, 309, 403, 448, 457
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	5 cut(s)	33, 76, 323, 342, 553
TspRI	CASTG	5 cut(s)	133, 309, 403, 448, 457
Van91I	CCANNNNNTGG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	2 cut(s)	368, 550
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.