Rorug05G0340100

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
41376617 .. 41380221
3605 bp
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UTR
Exon/CDS
Intron
Rorug05G0340100.1

Sequence Viewer

Length: 1329 bp
ATGGCATCTTCAAATAATGACCATGATCAGGTTAAAGCAGCAGGACTCTTCGAGAGGTTAAGGGGAAAGATAGTTGAGTTTGGCTTGATGTTGAAAAAACTAGGGCAAGATGATCCAAGAAGAATTGTTCATTCTCTTAAAGTGGCACTTGCTCTTACATTGACCTCCATGTTATTCTACTTTGAACCACTCTATGACGGTTTTGGTATAGCTGCTATGTGGGCTATTCTGACTGTTGTGGTCGTTTTTGAATTTACTGTTGGAGCGACGATAGGACGAGGTTTGAATAGAATAATGTCAACTGTAGTAGCTGCTGCTCTTGGCATTGGAGCTCATCGATTAGCAACTCTTTCGGGCAATCAAGGAGAGCCAATACTTATTGCTCTCTTTGTCTTCGTAGAAGCTGGAATAGTGACATTCTTCAGATTTATTCCCCAAATGAAGGCAAGATACGATTATGGGCTGCTGATATTCAACTTGACATTCTGCCTAATATCGGTGTCTGGCTATCGCGACGAGGAGGTTATACGATTAGGATTCGAGAGGGTATCTACCATCATCATTGGAAGTTTTACTGCAGTTACTGTTTGTGTTTTCATTCGTCCAGTATGGATTGGGGTGGAACTTCACAATCAGATTGCTACCAACATGGAAAAGCTTGCCAATTTCTTAGAAGAATTTGGAGATGAATACTTTACAGTATCTGAGAATGGCCAGATCAGAGACAAGTCATCTTCTGTTCAAGGATATAAAAGTGTTCTAACTTCAAAAGGCAGTGAAGACACCATGGCTAATTTAGCAAGATGGGAACCGGGCCATGGAAGGTTCAAGTTTCATCATCCATGGAAACAATACTTGAAAGTTGGAACCCTAACTCGCCAATGTGCGTTCAAAATTGAAGCTCTCAACAACTACCTTACCTCTGAAACCCAAACACCTCAGGAAGTTAAAAGCATAATACAAGGGCCAAGCGTGGTTATAAGCTCAGAGTGTGGGAAAGCATTGAAGCAGTTAGCAACCTCAATGAGGAAAATGACCAAATCATCCTCGAACGATCCTCACATTGCAAAGTCAAAAGATGCCGCTGAAGAACTCAAAGATGTTATAAGATCAAGCTTGTGTAAACTGCCAGCTGATTCCCTGCATATAATACAAGAAGGTGCAGTGGCTTCACTACTCTTTGAAATTATCAGATGTACAGAGAAAATTGCAGACGCTGTACATAAATTAGCATCCCAAGCACATTTTAAGGATGTAAAGCCTACAGTGACACCGGACCAGGAAAACTCCGTGAATGATGGGCCACACCATGTTATTGCGATTGAGTGA

Protein Analysis

442

Amino Acids

48.92

Weight (kDa)

7.68

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 33 - 372 6.5e-138 Aluminium activated malate transporter
FUSC_2 PF13515 72 - 195 7e-09 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 980, 1106
AccII CGCG 1 cut(s) 513
AciI CCGC 1 cut(s) 1083
AclWI GGATC 2 cut(s) 107, 1049
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 2 cut(s) 251, 677
AcuI CTGAAG 2 cut(s) 406, 1107
AfaI GTAC 2 cut(s) 1198, 1221
AfiI CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
AjnI CCWGG 1 cut(s) 1278
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 9 cut(s) 212, 311, 332, 404, 658, 902, 984, 1116, 1133
AluI AGCT 9 cut(s) 212, 311, 332, 404, 658, 902, 984, 1116, 1133
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 717
AlwI GGATC 2 cut(s) 107, 1049
AlwNI CAGNNNCTG 3 cut(s) 584, 704, 1217
AoxI GGCC 4 cut(s) 712, 814, 965, 1301
ApeKI GCWGC 5 cut(s) 38, 212, 311, 314, 463
ApoI RAATTY 2 cut(s) 251, 677
AspS9I GGNCC 4 cut(s) 814, 965, 1276, 1301
AsuC2I CCSGG 1 cut(s) 813
AvaII GGWCC 1 cut(s) 1276
AxyI CCTNAGG 1 cut(s) 939
BalI TGGCCA 1 cut(s) 714
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BbsI GAAGAC 2 cut(s) 385, 786
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 5 cut(s) 50, 199, 298, 301, 450
BccI CCATC 3 cut(s) 563, 798, 1292
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 1 cut(s) 1280
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 3 cut(s) 303, 576, 1263
BisI GCNGC 6 cut(s) 39, 213, 312, 315, 464, 1083
BlsI GCNGC 6 cut(s) 40, 214, 313, 316, 465, 1084
Bme1390I CCNGG 2 cut(s) 813, 1280
Bme18I GGWCC 1 cut(s) 1276
BmgT120I GGNCC 4 cut(s) 814, 965, 1276, 1301
BmiI GGNNCC 2 cut(s) 810, 868
BmrFI CCNGG 2 cut(s) 813, 1280
BmsI GCATC 3 cut(s) 14, 1069, 1241
BpiI GAAGAC 2 cut(s) 385, 786
BpuMI CCSGG 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 786, 817, 842
BsaWI WCCGGW 1 cut(s) 1273
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
Bse1I ACTGG 1 cut(s) 605
Bse21I CCTNAGG 1 cut(s) 939
Bse3DI GCAATG 1 cut(s) 1062
BseBI CCWGG 1 cut(s) 1280
BseCI ATCGAT 1 cut(s) 337
BseDI CCNNGG 3 cut(s) 786, 817, 842
BseGI GGATG 4 cut(s) 838, 1043, 1232, 1258
BseLI CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
BseMI GCAATG 1 cut(s) 1062
BseMII CTCAG 3 cut(s) 696, 953, 999
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 5 cut(s) 50, 199, 298, 301, 450
BsgI GTGCAG 1 cut(s) 1182
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 4 cut(s) 714, 816, 967, 1303
BshVI ATCGAT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 812, 1274
BslI CCNNNNNNNGG 5 cut(s) 28, 442, 496, 818, 1026
BsmAI GTCTC 1 cut(s) 717
BsnI GGCC 4 cut(s) 714, 816, 967, 1303
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 2 cut(s) 1196, 1219
Bsp143I GATC 5 cut(s) 25, 112, 717, 1054, 1109
Bsp19I CCATGG 3 cut(s) 786, 817, 842
Bsp68I TCGCGA 1 cut(s) 513
BspACI CCGC 1 cut(s) 1083
BspANI GGCC 4 cut(s) 714, 816, 967, 1303
BspCNI CTCAG 3 cut(s) 697, 952, 998
BspDI ATCGAT 1 cut(s) 337
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 810, 868
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 2 cut(s) 107, 1049
BsrDI GCAATG 1 cut(s) 1062
BsrGI TGTACA 2 cut(s) 1196, 1219
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 786, 817, 842
BssMI GATC 5 cut(s) 25, 112, 717, 1054, 1109
BssT1I CCWWGG 3 cut(s) 786, 817, 842
Bst2UI CCWGG 1 cut(s) 1280
Bst4CI ACNGT 7 cut(s) 200, 235, 259, 304, 586, 700, 1267
Bst6I CTCTTC 1 cut(s) 53
BstAUI TGTACA 2 cut(s) 1196, 1219
BstC8I GCNNGC 2 cut(s) 660, 1131
BstDEI CTNAG 4 cut(s) 670, 705, 939, 985
BstDSI CCRYGG 3 cut(s) 786, 817, 842
BstENI CCTNNNNNAGG 1 cut(s) 1024
BstF5I GGATG 4 cut(s) 838, 1043, 1232, 1258
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 5 cut(s) 28, 115, 720, 1057, 1112
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 5 cut(s) 25, 112, 717, 1054, 1109
BstMWI GCNNNNNNNGC 3 cut(s) 221, 797, 1238
BstNI CCWGG 1 cut(s) 1280
BstSCI CCNGG 2 cut(s) 811, 1278
BstSFI CTRYAG 3 cut(s) 303, 576, 1263
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 5 cut(s) 50, 199, 298, 301, 450
BstV2I GAAGAC 2 cut(s) 385, 786
Bsu15I ATCGAT 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 939
BsuRI GGCC 4 cut(s) 714, 816, 967, 1303
BsuTUI ATCGAT 1 cut(s) 337
BtgI CCRYGG 3 cut(s) 786, 817, 842
BtsCI GGATG 4 cut(s) 838, 1043, 1232, 1258
BtsI GCAGTG 2 cut(s) 781, 1170
BtsIMutI CAGTG 3 cut(s) 781, 1170, 1272
BtuMI TCGCGA 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 660, 1131
CaiI CAGNNNCTG 3 cut(s) 584, 704, 1217
Cfr13I GGNCC 4 cut(s) 814, 965, 1276, 1301
ClaI ATCGAT 1 cut(s) 337
CseI GACGC 1 cut(s) 1223
Csp6I GTAC 2 cut(s) 1197, 1220
CviAII CATG 7 cut(s) 23, 169, 649, 787, 818, 843, 1310
CviQI GTAC 2 cut(s) 1197, 1220
DdeI CTNAG 4 cut(s) 670, 705, 939, 985
DpnI GATC 5 cut(s) 27, 114, 719, 1056, 1111
DpnII GATC 5 cut(s) 25, 112, 717, 1054, 1109
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 786, 817, 842
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 1276
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 406, 1107
Eco81I CCTNAGG 1 cut(s) 939
EcoICRI GAGCTC 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 1024
EcoRII CCWGG 1 cut(s) 1278
EcoT14I CCWWGG 3 cut(s) 786, 817, 842
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 3 cut(s) 786, 817, 842
FaeI CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1313
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 7 cut(s) 22, 168, 648, 786, 817, 842, 1309
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 6 cut(s) 39, 213, 312, 315, 464, 1083
FokI GGATG 4 cut(s) 825, 1030, 1219, 1265
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 6 cut(s) 39, 213, 312, 315, 464, 1083
FspBI CTAG 1 cut(s) 101
GluI GCNGC 6 cut(s) 39, 213, 312, 315, 464, 1083
HaeIII GGCC 4 cut(s) 714, 816, 967, 1303
HapII CCGG 2 cut(s) 812, 1274
HgaI GACGC 1 cut(s) 1223
Hin1II CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1313
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 2 cut(s) 656, 1114
HinfI GANTC 3 cut(s) 45, 537, 1136
HpaII CCGG 2 cut(s) 812, 1274
Hpy166II GTNNAC 2 cut(s) 300, 1124
Hpy188I TCNGA 8 cut(s) 231, 425, 636, 706, 722, 925, 988, 1193
Hpy188III TCNNGA 4 cut(s) 52, 512, 541, 941
Hpy8I GTNNAC 2 cut(s) 300, 1124
Hpy99I CGWCG 2 cut(s) 271, 518
HpyAV CCTTC 3 cut(s) 436, 816, 1151
HpyCH4III ACNGT 7 cut(s) 200, 235, 259, 304, 586, 700, 1267
HpyCH4V TGCA 5 cut(s) 578, 1067, 1144, 1163, 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 797, 1238
HpyF3I CTNAG 4 cut(s) 670, 705, 939, 985
Hsp92II CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1313
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 5 cut(s) 25, 112, 717, 1054, 1109
LmnI GCTCC 2 cut(s) 263, 329
Lsp1109I GCAGC 5 cut(s) 50, 199, 298, 301, 450
LweI GCATC 3 cut(s) 14, 1069, 1241
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 3 cut(s) 412, 580, 1267
MalI GATC 5 cut(s) 27, 114, 719, 1056, 1111
MboI GATC 5 cut(s) 25, 112, 717, 1054, 1109
MboII GAAGA 8 cut(s) 40, 132, 385, 412, 686, 726, 791, 1100
MhlI GDGCHC 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 9 cut(s) 123, 251, 664, 677, 793, 894, 1185, 1206, 1226
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 2 cut(s) 241, 844
Mox20I TGGCCA 1 cut(s) 714
MscI TGGCCA 1 cut(s) 714
MseI TTAA 5 cut(s) 33, 59, 138, 948, 1248
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 1085, 1133
MspI CCGG 2 cut(s) 812, 1274
MspR9I CCNGG 2 cut(s) 813, 1280
MvaI CCWGG 1 cut(s) 1280
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 3 cut(s) 221, 797, 1238
NciI CCSGG 1 cut(s) 813
NcoI CCATGG 3 cut(s) 786, 817, 842
NdeII GATC 5 cut(s) 25, 112, 717, 1054, 1109
NlaIII CATG 7 cut(s) 26, 172, 652, 790, 821, 846, 1313
NlaIV GGNNCC 2 cut(s) 810, 868
NmuCI GTSAC 2 cut(s) 412, 1267
NruI TCGCGA 1 cut(s) 513
PfeI GAWTC 2 cut(s) 537, 1136
PkrI GCNGC 6 cut(s) 40, 214, 313, 316, 465, 1084
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PsiI TTATAA 2 cut(s) 980, 1106
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 1278
PspGI CCWGG 1 cut(s) 1278
PspN4I GGNNCC 2 cut(s) 810, 868
PspPI GGNCC 4 cut(s) 814, 965, 1276, 1301
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 3 cut(s) 584, 704, 1217
PvuII CAGCTG 1 cut(s) 1133
RruI TCGCGA 1 cut(s) 513
RsaI GTAC 2 cut(s) 1198, 1221
RsaNI GTAC 2 cut(s) 1197, 1220
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 5 cut(s) 33, 59, 138, 948, 1248
SatI GCNGC 6 cut(s) 39, 213, 312, 315, 464, 1083
Sau3AI GATC 5 cut(s) 25, 112, 717, 1054, 1109
Sau96I GGNCC 4 cut(s) 814, 965, 1276, 1301
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 813, 1280
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 3 cut(s) 14, 1069, 1241
SfcI CTRYAG 3 cut(s) 303, 576, 1263
SinI GGWCC 1 cut(s) 1276
Sse9I AATT 9 cut(s) 123, 251, 664, 677, 793, 894, 1185, 1206, 1226
SsiI CCGC 1 cut(s) 1083
SspMI CTAG 1 cut(s) 101
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 811, 1278
StyI CCWWGG 3 cut(s) 786, 817, 842
TaaI ACNGT 7 cut(s) 200, 235, 259, 304, 586, 700, 1267
TaqI TCGA 4 cut(s) 51, 337, 540, 1049
TasI AATT 9 cut(s) 123, 251, 664, 677, 793, 894, 1185, 1206, 1226
TatI WGTACW 2 cut(s) 1196, 1219
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 2 cut(s) 537, 1136
Tru1I TTAA 5 cut(s) 33, 59, 138, 948, 1248
Tru9I TTAA 5 cut(s) 33, 59, 138, 948, 1248
TscAI CASTG 3 cut(s) 781, 1170, 1272
TseFI GTSAC 2 cut(s) 412, 1267
TseI GCWGC 5 cut(s) 38, 212, 311, 314, 463
Tsp45I GTSAC 2 cut(s) 412, 1267
TspDTI ATGAA 5 cut(s) 119, 455, 586, 702, 824
TspGWI ACGGA 1 cut(s) 1279
TspRI CASTG 3 cut(s) 781, 1170, 1272
VpaK11BI GGWCC 1 cut(s) 1276
XagI CCTNNNNNAGG 1 cut(s) 1024
XapI RAATTY 2 cut(s) 251, 677
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.