Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007470.1

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2035

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007470.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggaagttgaagggaagctctctacccactccacatccaaagaagaagatggtgaagttcatagggtttgcgatgagaatcaggattctaaaggaggctggaccacctttccctttgttattgcaactgtgttgggtctctcagtagcagtcggcgggtggggagcaaatttgatagtgtttctgataacaaaattcaatgtgaagaccataaccgctatacagatcaataacatcatccttggtacgaccaatctcctccccattgctggagccttcatcgctgattcattcttcaccatattttctgtcgtcagtgccttttccttcatttctttactgaccaacctcagtctcgacccgttttgtagcgacggcagatccgatgatatctccactttccggccatctctcgatgtcagaccgacgtcgttcgacttctccagatgtcgcgaactagagccccatcgtccctgctccgaaagaccgacgatggaggcaggaagaagcccgaaaacttctccggttcgccggcgggttttccgattccggctacgtcgtggcgtctcactgtgtcagaagcttcctttcgacctcgccgacctatccatggtgttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

206

Amino Acids

22.84

Weight (kDa)

7.66

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	431
AccII	CGCG	1 cut(s)	453
AciI	CCGC	3 cut(s)	156, 216, 535
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	169, 194
AcyI	GRCGYC	2 cut(s)	428, 564
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	3 cut(s)	269, 402, 610
AgsI	TTSAA	2 cut(s)	11, 199
AluBI	AGCT	2 cut(s)	19, 583
AluI	AGCT	2 cut(s)	19, 583
Alw26I	GTCTC	3 cut(s)	143, 359, 571
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	169, 194
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	65, 289
AvaII	GGWCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	212
BccI	CCATC	4 cut(s)	44, 415, 474, 487
BceAI	ACGGC	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	143, 359, 571
BfaI	CTAG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	274
BoxI	GACNNNNGTC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	2 cut(s)	291, 427
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	2 cut(s)	428, 564
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	241, 609
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 402, 610
Bse118I	RCCGGY	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	241, 609
BseGI	GGATG	2 cut(s)	35, 237
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	269, 402, 610
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	156, 364
BseRI	GAGGAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	406
BsiSI	CCGG	4 cut(s)	403, 524, 532, 550
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	3 cut(s)	269, 402, 610
BsmAI	GTCTC	3 cut(s)	143, 359, 571
BsmBI	CGTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	406
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	225, 380
Bsp19I	CCATGG	1 cut(s)	609
Bsp68I	TCGCGA	1 cut(s)	453
BspACI	CCGC	3 cut(s)	156, 216, 535
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	2 cut(s)	155, 363
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	531
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	241, 609
BssMI	GATC	2 cut(s)	225, 380
BssNI	GRCGYC	2 cut(s)	428, 564
BssT1I	CCWWGG	2 cut(s)	241, 609
Bst4CI	ACNGT	2 cut(s)	130, 573
BstACI	GRCGYC	2 cut(s)	428, 564
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	142, 350
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	35, 237
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	2 cut(s)	228, 383
BstMAI	GTCTC	3 cut(s)	143, 359, 571
BstMBI	GATC	2 cut(s)	225, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstPAI	GACNNNNGTC	1 cut(s)	427
BstUI	CGCG	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	2 cut(s)	87, 265
BtsCI	GGATG	2 cut(s)	35, 237
BtsIMutI	CAGTG	2 cut(s)	322, 569
BtuMI	TCGCGA	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	533
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	1 cut(s)	610
CviJI	RGCY	8 cut(s)	19, 99, 275, 406, 463, 510, 553, 583
CviKI_1	RGCY	8 cut(s)	19, 99, 275, 406, 463, 510, 553, 583
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	2 cut(s)	142, 350
DpnI	GATC	2 cut(s)	227, 382
DpnII	GATC	2 cut(s)	225, 380
EaeI	YGGCCR	1 cut(s)	404
Eco130I	CCWWGG	2 cut(s)	241, 609
Eco24I	GRGCYC	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	241, 609
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	241, 609
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	1 cut(s)	613
FaiI	YATR	5 cut(s)	63, 212, 221, 302, 611
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	609
FauI	CCCGC	2 cut(s)	149, 528
FokI	GGATG	2 cut(s)	22, 224
FriOI	GRGCYC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	458
GsuI	CTGGAG	2 cut(s)	291, 427
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	4 cut(s)	403, 524, 532, 550
HgaI	GACGC	1 cut(s)	553
Hin1I	GRCGYC	2 cut(s)	428, 564
Hin1II	CATG	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	4 cut(s)	79, 86, 287, 546
HpaII	CCGG	4 cut(s)	403, 524, 532, 550
HphI	GGTGA	2 cut(s)	65, 289
Hpy188I	TCNGA	6 cut(s)	186, 385, 422, 481, 545, 579
Hpy188III	TCNNGA	5 cut(s)	83, 356, 413, 444, 452
Hpy99I	CGWCG	5 cut(s)	377, 430, 433, 493, 561
HpyAV	CCTTC	3 cut(s)	5, 286, 337
HpyCH4III	ACNGT	2 cut(s)	130, 573
HpyCH4IV	ACGT	2 cut(s)	428, 556
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	142, 350
HpySE526I	ACGT	2 cut(s)	428, 556
Hsp92I	GRCGYC	2 cut(s)	428, 564
Hsp92II	CATG	1 cut(s)	613
KroI	GCCGGC	1 cut(s)	531
KroNI	GCCGGC	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	225, 380
LmnI	GCTCC	3 cut(s)	164, 272, 482
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	2 cut(s)	428, 556
MalI	GATC	2 cut(s)	227, 382
MboI	GATC	2 cut(s)	225, 380
MboII	GAAGA	5 cut(s)	56, 59, 217, 286, 516
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	2 cut(s)	169, 194
MnlI	CCTC	5 cut(s)	89, 269, 359, 490, 605
MreI	CGCCGGCG	1 cut(s)	531
MroNI	GCCGGC	1 cut(s)	531
MspI	CCGG	4 cut(s)	403, 524, 532, 550
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	281
NaeI	GCCGGC	1 cut(s)	533
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	2 cut(s)	225, 380
NgoMIV	GCCGGC	1 cut(s)	531
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	1 cut(s)	274
NruI	TCGCGA	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 597
PdiI	GCCGGC	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	79, 86, 287, 546
PshAI	GACNNNNGTC	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	380
RruI	TCGCGA	1 cut(s)	453
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	225, 380
Sau96I	GGNCC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	8 cut(s)	21, 110, 351, 431, 559, 585, 597, 606
SgrAI	CRCCGGYG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	2 cut(s)	169, 194
SsiI	CCGC	3 cut(s)	156, 216, 535
SspMI	CTAG	1 cut(s)	458
StyI	CCWWGG	2 cut(s)	241, 609
TaaI	ACNGT	2 cut(s)	130, 573
TaiI	ACGT	2 cut(s)	431, 559
TaqI	TCGA	4 cut(s)	357, 414, 435, 591
TaqII	GACCGA	2 cut(s)	439, 502
TasI	AATT	2 cut(s)	169, 194
TfiI	GAWTC	4 cut(s)	79, 86, 287, 546
TscAI	CASTG	2 cut(s)	322, 576
TspDTI	ATGAA	4 cut(s)	50, 268, 279, 319
TspRI	CASTG	2 cut(s)	322, 576
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	2 cut(s)	169, 194
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.