Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

60931039 .. 60932748

Gene Structure 1710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG439400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAGAATGGCTCCCGCTCCCACACCGGTGAATCCCAAATCATATCATCTGATTCCAGTAGCAGACGAGGTGGTTGGATCACTTTCCCCTTCATCATCGGGGCTATAATAGGTTTATCACTTGCAGTGGGAGGATGGCTCTCAAATTTGATAGTATTTCTGATTCAAGAATTCAATGTGAAGAGTATTGATGCTGCTCAGATTGCAAACGTGGTTAACGGTTCTTCCTGCTTTTTCCCAGTCATTGGAGCAATTATAGCAGACTCTTTCTTTGGCCCTTTCTTGGTCATCTCCATTTTTTCCTGCATTTCCTTGCTGGGTATTGTTTTTTTGGCATTAACTACTACATTCGATTCGTTAAAGCCTCAATCTTGTTTAATCGGATCAGAAATATGCCAGCCAACCTCAACTCTGCAATATACAATCTTGTATACGGGTATAGCTTTGGCATCAATTGGCTTGGGAGGTACACGCTTTACCCTAGCAACAATGGGAGCTAATCAATTGGATAAGCCTAAAAATCAAGCAACTTTCTTTAACTGGTACTTCGTTGGCATATACTTTGCTTTAACCGTAGCTCTAACTGTCATCGTGTACATAGAGGACAATGTGGGTTTTAAATGGGGTTTCGGCCTAGCTGTTGCTGGCAATGTTATTGGCTTGGTCATTTTCTTATCTGGAACCCGTTTCTACCATTTTAATAAGCCTCAAGGGAGTCCATTTGTGGGTTTAGCTCGTGTCATTGTTGCTACTACCTGGAAAAGGAATCTCCAACTCTCATCTGAAAGCAAGGATTATTGTTACTATGGGCATGAGGGAGTGACCAACAGGGTGGCTACAACACCAAGCAGGAGCTTCAGGTACAAAGTATACGCTAGGGGTGCTCCAAATTGGAATATGATCATACATTTATGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

306

Amino Acids

33.35

Weight (kDa)

9.02

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	95 - 261	7.9e-28	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	18
AccI	GTMKAC	2 cut(s)	431, 870
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	2 cut(s)	86, 391
AcsI	RAATTY	2 cut(s)	145, 170
AcuI	CTGAAG	1 cut(s)	841
AfaI	GTAC	4 cut(s)	469, 545, 596, 863
AfiI	CCNNNNNNNGG	4 cut(s)	245, 283, 725, 762
AgeI	ACCGGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	167, 175
AjnI	CCWGG	1 cut(s)	755
AleI	CACNNNNGTG	1 cut(s)	27
AluBI	AGCT	6 cut(s)	443, 497, 578, 638, 734, 855
AluI	AGCT	6 cut(s)	443, 497, 578, 638, 734, 855
Alw21I	GWGCWC	1 cut(s)	886
AlwI	GGATC	2 cut(s)	86, 391
AoxI	GGCC	2 cut(s)	274, 631
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	2 cut(s)	145, 170
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AsiGI	ACCGGT	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	41
BauI	CACGAG	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	886
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	757
BclI	TGATCA	1 cut(s)	900
BfaI	CTAG	3 cut(s)	482, 635, 876
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	13, 682
BmrFI	CCNGG	1 cut(s)	757
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	181, 458
BmuI	ACTGGG	1 cut(s)	233
BplI	GAGNNNNNCTC	3 cut(s)	28, 123, 155
BpuEI	CTTGAG	1 cut(s)	693
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 283, 725, 762
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	3 cut(s)	57, 239, 545
Bse3DI	GCAATG	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	757
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	245, 283, 725, 762
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	3 cut(s)	57, 239, 545
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	2 cut(s)	276, 633
BshTI	ACCGGT	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	886
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	4 cut(s)	245, 283, 725, 762
BsnI	GGCC	2 cut(s)	276, 633
Bsp1286I	GDGCHC	1 cut(s)	886
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	3 cut(s)	78, 383, 900
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	276, 633
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	13, 682
BspPI	GGATC	2 cut(s)	86, 391
BsrBI	CCGCTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	3 cut(s)	57, 239, 545
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	3 cut(s)	78, 383, 900
BssNAI	GTATAC	2 cut(s)	432, 871
BssSI	CACGAG	1 cut(s)	735
Bst1107I	GTATAC	2 cut(s)	432, 871
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	3 cut(s)	221, 574, 586
Bst6I	CTCTTC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	398, 646
BstDEI	CTNAG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	760
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	81, 386, 903
BstMBI	GATC	3 cut(s)	78, 383, 900
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 257, 881
BstNI	CCWGG	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	755
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	832
BstZ17I	GTATAC	2 cut(s)	432, 871
BsuRI	GGCC	2 cut(s)	276, 633
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	398, 646
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	4 cut(s)	468, 544, 595, 862
CspAI	ACCGGT	1 cut(s)	26
CviAII	CATG	1 cut(s)	812
CviQI	GTAC	4 cut(s)	468, 544, 595, 862
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	80, 385, 902
DpnII	GATC	3 cut(s)	78, 383, 900
DraI	TTTAAA	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	841
EcoNI	CCTNNNNNAGG	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	755
FaeI	CATG	1 cut(s)	815
FatI	CATG	1 cut(s)	811
FauI	CCCGC	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	900
FblI	GTMKAC	2 cut(s)	431, 870
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	3 cut(s)	482, 635, 876
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	276, 633
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	1 cut(s)	815
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	7 cut(s)	32, 53, 163, 263, 353, 715, 766
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	5 cut(s)	217, 432, 470, 595, 871
Hpy188I	TCNGA	6 cut(s)	52, 162, 201, 383, 388, 784
Hpy188III	TCNNGA	2 cut(s)	167, 678
Hpy8I	GTNNAC	5 cut(s)	217, 432, 470, 595, 871
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	3 cut(s)	221, 574, 586
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	125, 206, 306, 415, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 257, 881
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	815
Ksp22I	TGATCA	1 cut(s)	900
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	78, 383, 900
LmnI	GCTCC	6 cut(s)	17, 23, 248, 494, 852, 889
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	2 cut(s)	181, 458
MaeI	CTAG	3 cut(s)	482, 635, 876
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	800, 820
MalI	GATC	3 cut(s)	80, 385, 902
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	3 cut(s)	78, 383, 900
MboII	GAAGA	2 cut(s)	193, 216
MfeI	CAATTG	2 cut(s)	453, 503
MhlI	GDGCHC	1 cut(s)	886
MluCI	AATT	6 cut(s)	145, 170, 252, 453, 503, 889
MlyI	GAGTC	2 cut(s)	257, 724
MmeI	TCCRAC	2 cut(s)	56, 796
MnlI	CCTC	8 cut(s)	62, 125, 375, 415, 458, 595, 717, 808
MseI	TTAA	8 cut(s)	216, 338, 359, 377, 537, 569, 618, 699
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	757
MunI	CAATTG	2 cut(s)	453, 503
MvaI	CCWGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	3 cut(s)	203, 257, 881
NdeII	GATC	3 cut(s)	78, 383, 900
NlaIII	CATG	1 cut(s)	815
NlaIV	GGNNCC	2 cut(s)	13, 682
NmuCI	GTSAC	1 cut(s)	820
OliI	CACNNNNGTG	1 cut(s)	27
PfeI	GAWTC	5 cut(s)	32, 53, 163, 353, 766
PflMI	CCANNNNNTGG	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	2 cut(s)	257, 723
PpsI	GAGTC	2 cut(s)	257, 723
Psp6I	CCWGG	1 cut(s)	755
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	2 cut(s)	13, 682
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	4 cut(s)	469, 545, 596, 863
RsaNI	GTAC	4 cut(s)	468, 544, 595, 862
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	8 cut(s)	216, 338, 359, 377, 537, 569, 618, 699
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	3 cut(s)	78, 383, 900
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	257, 724
ScrFI	CCNGG	1 cut(s)	757
SduI	GDGCHC	1 cut(s)	886
SfaNI	GCATC	2 cut(s)	181, 458
SgrAI	CRCCGGYG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
Sse9I	AATT	6 cut(s)	145, 170, 252, 453, 503, 889
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	3 cut(s)	482, 635, 876
StyD4I	CCNGG	1 cut(s)	755
TaaI	ACNGT	3 cut(s)	221, 574, 586
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	351
TasI	AATT	6 cut(s)	145, 170, 252, 453, 503, 889
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	5 cut(s)	32, 53, 163, 353, 766
Tru1I	TTAA	8 cut(s)	216, 338, 359, 377, 537, 569, 618, 699
Tru9I	TTAA	8 cut(s)	216, 338, 359, 377, 537, 569, 618, 699
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	760
XapI	RAATTY	2 cut(s)	145, 170
XmiI	GTMKAC	2 cut(s)	431, 870
XspI	CTAG	3 cut(s)	482, 635, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.