Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

7309692 .. 7310443

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTAGGCATCGTTCTCTTAGTTTTAACCGCAACGCTGAATTCGTTGAAGCCTCAACCTTGTGCTACCGGCTCAAAGTTATGCCAACCGACCTCGGCAGTACAGTATGCAGTCTTCTACACCGGCATAACTCTCGCATCTCTTGGCTTGGGAGGTACCCGCTATACCTTGGCAACACTGGGAGCCAATCAATTTGAGAAGCCTAAGCATCAAGCAAGTTTCTTCAACTGGTTCTTCTTCACTCTATACTCTAGCACAGTGGTAGCCCTGACAGTCATTGTCTACATTGAAGACAACGTCGGTTTTAAATGGGGGTTTGGCCTTTGTGTCATCGCCAACCTAATCGGAATGGCCATTTTCTTCTCTGGAAGCCGTTTCTATAAATTTGATAAGCCACAAGGGAGTCCATTTGTTGGTTTAGGTCGTGTTATTGTTGCCTCTGTTCGGAAAACTAGTCTACAGCTATCAACTGAAAGAAAGGATTATCATTATGGACATGATGGAGTGACGAATAATGTGGCTGCAGCAACACTTAGCAAGAGTTTCAGGTACAAACAGTATAGGTTAATATATACGCAAGGTAGAGATAGAGAGAGAAACATGCGCGATTTCAAAACCAAATTATATACGCTAGATAGTGTTTTCTTGTCAAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

220

Amino Acids

24.46

Weight (kDa)

9.78

Isoelectric Point (pI)

16.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 176	4.4e-29	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	2 cut(s)	282, 457
AccII	CGCG	1 cut(s)	606
AciI	CCGC	2 cut(s)	30, 160
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	40, 383
AfaI	GTAC	3 cut(s)	102, 157, 551
AfiI	CCNNNNNNNGG	2 cut(s)	413, 444
AgsI	TTSAA	4 cut(s)	49, 226, 290, 613
AhlI	ACTAGT	1 cut(s)	452
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
AoxI	GGCC	2 cut(s)	319, 351
ApeKI	GCWGC	2 cut(s)	521, 524
ApoI	RAATTY	2 cut(s)	40, 383
Asp718I	GGTACC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	606
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbsI	GAAGAC	2 cut(s)	106, 297
BbvI	GCAGC	2 cut(s)	508, 536
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	4 cut(s)	5, 252, 453, 632
BfmI	CTRYAG	2 cut(s)	458, 522
BisI	GCNGC	2 cut(s)	522, 525
BlsI	GCNGC	2 cut(s)	523, 526
BmiI	GGNNCC	2 cut(s)	157, 184
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	18, 146, 217
BmuI	ACTGGG	1 cut(s)	188
BpiI	GAAGAC	2 cut(s)	106, 297
Bpu10I	CCTNAGC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	93, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 444
Bse118I	RCCGGY	2 cut(s)	68, 122
Bse1I	ACTGG	2 cut(s)	183, 233
BseDI	CCNNGG	2 cut(s)	93, 168
BseLI	CCNNNNNNNGG	2 cut(s)	413, 444
BseNI	ACTGG	2 cut(s)	183, 233
BseXI	GCAGC	2 cut(s)	508, 536
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	321, 353
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	69, 123
BslI	CCNNNNNNNGG	2 cut(s)	413, 444
BsnI	GGCC	2 cut(s)	321, 353
BspACI	CCGC	2 cut(s)	30, 160
BspANI	GGCC	2 cut(s)	321, 353
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	157, 184
BspMAI	CTGCAG	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	155
BsrFI	RCCGGY	2 cut(s)	68, 122
BsrI	ACTGG	2 cut(s)	183, 233
BssAI	RCCGGY	2 cut(s)	68, 122
BssECI	CCNNGG	2 cut(s)	93, 168
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	105, 259, 274, 558
BstDEI	CTNAG	3 cut(s)	19, 204, 533
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	604
BstSFI	CTRYAG	2 cut(s)	458, 522
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	508, 536
BstV2I	GAAGAC	2 cut(s)	106, 297
BsuRI	GGCC	2 cut(s)	321, 353
BtgZI	GCGATG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	176, 264
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	2 cut(s)	68, 122
Csp6I	GTAC	3 cut(s)	101, 156, 550
CviAII	CATG	2 cut(s)	497, 601
CviQI	GTAC	3 cut(s)	101, 156, 550
DdeI	CTNAG	3 cut(s)	19, 204, 533
DraI	TTTAAA	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	500, 604
FatI	CATG	2 cut(s)	496, 600
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	2 cut(s)	282, 457
Fnu4HI	GCNGC	2 cut(s)	522, 525
Fsp4HI	GCNGC	2 cut(s)	522, 525
FspBI	CTAG	4 cut(s)	5, 252, 453, 632
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	2 cut(s)	522, 525
HaeIII	GGCC	2 cut(s)	321, 353
HapII	CCGG	2 cut(s)	69, 123
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	500, 604
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	69, 123
Hpy166II	GTNNAC	2 cut(s)	283, 458
Hpy188I	TCNGA	2 cut(s)	347, 447
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	283, 458
Hpy99I	CGWCG	1 cut(s)	302
HpyCH4III	ACNGT	4 cut(s)	105, 259, 274, 558
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	110, 524
HpyF3I	CTNAG	3 cut(s)	19, 204, 533
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	500, 604
HspAI	GCGC	1 cut(s)	604
KpnI	GGTACC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	82, 136, 164, 214, 281, 351, 532
Lsp1109I	GCAGC	2 cut(s)	508, 536
LweI	GCATC	3 cut(s)	18, 146, 217
MaeI	CTAG	4 cut(s)	5, 252, 453, 632
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	505
MboII	GAAGA	6 cut(s)	106, 214, 226, 229, 302, 352
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	5 cut(s)	40, 191, 383, 620, 655
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	4 cut(s)	63, 103, 146, 448
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	3 cut(s)	26, 306, 566
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	2 cut(s)	69, 123
MvnI	CGCG	1 cut(s)	606
NlaIII	CATG	2 cut(s)	500, 604
NlaIV	GGNNCC	2 cut(s)	157, 184
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	523, 526
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	157, 184
PstI	CTGCAG	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	3 cut(s)	102, 157, 551
RsaNI	GTAC	3 cut(s)	101, 156, 550
SaqAI	TTAA	3 cut(s)	26, 306, 566
SatI	GCNGC	2 cut(s)	522, 525
SchI	GAGTC	1 cut(s)	412
SfaNI	GCATC	3 cut(s)	18, 146, 217
SfcI	CTRYAG	2 cut(s)	458, 522
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	5 cut(s)	40, 191, 383, 620, 655
SsiI	CCGC	2 cut(s)	30, 160
SspMI	CTAG	4 cut(s)	5, 252, 453, 632
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	105, 259, 274, 558
TaiI	ACGT	1 cut(s)	300
TasI	AATT	5 cut(s)	40, 191, 383, 620, 655
TatI	WGTACW	1 cut(s)	100
Tru1I	TTAA	3 cut(s)	26, 306, 566
Tru9I	TTAA	3 cut(s)	26, 306, 566
TscAI	CASTG	2 cut(s)	183, 264
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	521, 524
Tsp45I	GTSAC	1 cut(s)	505
TspRI	CASTG	2 cut(s)	183, 264
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	40, 383
XceI	RCATGY	1 cut(s)	604
XmiI	GTMKAC	2 cut(s)	282, 457
XspI	CTAG	4 cut(s)	5, 252, 453, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.