Rorug05G0340300

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
41440517 .. 41444516
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0340300.1

Sequence Viewer

Length: 1443 bp
ATGACTTCTGCAGAGTTTGATGATTTGGAGAACGGAAGCTGCGGCAAAGGGCCTTGCGGCCGTATGCTGCGGTGGCTGAAGGCGGTGTCGGCGAAGTCGTGGGGTAAGGTAGTGGAGGTAGCGAGGGAGGGGAAGAAGCTCGCAGAGGATGATCCGAGAAGGATTGTGCATTCGTTCAAAGTAGGGTTGGCTATTACGTTGGTTTGTCTGTTTTATTACTATCGACCGCTTTATGATGGCTTTGGTGTCGATGCAATGTGGGCGGTCTTGACCGTGGCCCTTGTGTTTGAGTACTCGGTTGGAGGAACCCTAGAAAGGGGTATAAATAGGATGATGGCAACGTTACTAGCTGGTGCTCTAGCTGTTGGAGTTCATCACATATCAACTCTTTGGGGAGGAAAAGTCGGGGAGCCCATATTGATGGCATTTTCCGTCTTTGTTGTGGCTGCAATTATGACCTTCCTGAGATTCTTCCCCGTGTTAAAGGCAAGGCATGACTATGGGCTGATGATATTCATACTGACCTTCTGCTTGGTTTCGGTATCCGGCTACAAAGACGAACAGGTACTAGACATGGCACACAGGAGGCTCTCAACGGTTGCTATAGGAGGCTGCACTACTATTATAGTTTGTATCTGCATTTGCCCTGTGTGGATTGGAGTTGATCTCCACAATTTAATTGCTGGTAACATGGAAAAGCTTGGGGATTTTATGGAAGGATTTGGATTTGAATACTTTGGCATAACAGAGAATGGGTTGTCATTAAGTGATACTAAATCTTCGCTTCAGCGATATAAAAGTGTTCTTACATCAAAAGGCCTTGAAGAATTTACGGCTAACTTGGCACGATGGGAACCAGGTCATGGCGGGTTCAAGTTCTGTCACCCATGGGAGAAGTACTTGAATGTTGGAACCCAAAGTCGGCAGTGTGCCTATAAAATTGAAGCTCTTAATAACACTTACCTGAACACTGAAATTCAAGCGCCCGCTGAAATTCGAAGCAAAATTCAAGAACCATGCACAAATATTTGCAATGAATGCGGAAAAGCTTTGAAGGAATTAGCTGCAGCACTCAAGAAAATGACTCTGTCATCATCAGCTGATCAACACATTGCATACTCAAAAGCAGCAGCTGAGAGCCTCGACTCGTTACTCAAAAGTGGCATATGGGAAGATGCTAATGTGCTAGAAACAATACCATCCGCTGCGGTGGCGTTGCTTCTTATTGATGTTGTAGCTTGTGTAGAGAAGATTTCGGAAGCAGTTCATGAACTAGCATCCGCTGCAGACTTCAAGACTGAACAACCACAACTACTTCAGGAGCCAGTGCTTTCTGAAGAATCACATGTTGCTATGACAATTGATCATAATTCAACTGAGGGGCTACCAGAAAATGGAAGTTCAAATGGCATCACTACTAATTATAAAATTTATAATGTTTAA

Protein Analysis

480

Amino Acids

52.62

Weight (kDa)

5.71

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 46 - 388 3.4e-135 Aluminium activated malate transporter
FUSC_2 PF13515 84 - 210 7.6e-11 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1425, 1434
AccB7I CCANNNNNTGG 2 cut(s) 863, 1394
AclI AACGTT 1 cut(s) 341
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 5 cut(s) 827, 975, 993, 1005, 1428
AcuI CTGAAG 4 cut(s) 98, 770, 1301, 1356
AfaI GTAC 3 cut(s) 293, 567, 899
AfiI CCNNNNNNNGG 5 cut(s) 315, 316, 863, 921, 1394
AflIII ACRYGT 1 cut(s) 1345
AjnI CCWGG 1 cut(s) 856
Alw21I GWGCWC 1 cut(s) 358
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 1133
AoxI GGCC 4 cut(s) 50, 58, 276, 817
ApoI RAATTY 5 cut(s) 827, 975, 993, 1005, 1428
Asp700I GAANNNNTTC 1 cut(s) 1263
AspLEI GCGC 1 cut(s) 985
AspS9I GGNCC 2 cut(s) 50, 277
AsuHPI GGTGA 1 cut(s) 875
AsuII TTCGAA 1 cut(s) 997
BanII GRGCYC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 358
BccI CCATC 5 cut(s) 230, 328, 415, 843, 1207
BceAI ACGGC 2 cut(s) 45, 849
BciT130I CCWGG 1 cut(s) 858
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 2 cut(s) 1102, 1363
BfaI CTAG 6 cut(s) 311, 347, 359, 569, 1187, 1274
BfmI CTRYAG 4 cut(s) 9, 603, 1065, 1284
BfoI RGCGCY 1 cut(s) 986
BfuI GTATCC 1 cut(s) 553
BmcAI AGTACT 2 cut(s) 293, 899
Bme1390I CCNGG 1 cut(s) 858
BmgT120I GGNCC 2 cut(s) 50, 277
BmiI GGNNCC 5 cut(s) 307, 411, 855, 913, 1323
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 4 cut(s) 241, 1165, 1286, 1419
BplI GAGNNNNNCTC 2 cut(s) 651, 683
Bpu14I TTCGAA 1 cut(s) 997
BpuEI CTTGAG 1 cut(s) 1058
BsaJI CCNNGG 2 cut(s) 273, 887
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 5 cut(s) 315, 316, 863, 921, 1394
Bse1I ACTGG 1 cut(s) 1325
Bse3DI GCAATG 3 cut(s) 261, 1039, 1110
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 2 cut(s) 273, 887
BseGI GGATG 4 cut(s) 154, 336, 1199, 1277
BseLI CCNNNNNNNGG 5 cut(s) 315, 316, 863, 921, 1394
BseMI GCAATG 3 cut(s) 261, 1039, 1110
BseMII CTCAG 3 cut(s) 455, 1125, 1368
BseNI ACTGG 1 cut(s) 1325
BseX3I CGGCCG 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 598
Bsh1285I CGRYCG 2 cut(s) 61, 227
BshFI GGCC 4 cut(s) 52, 60, 278, 819
BsiEI CGRYCG 2 cut(s) 61, 227
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 546
BslI CCNNNNNNNGG 5 cut(s) 315, 316, 863, 921, 1394
BsmI GAATGC 2 cut(s) 169, 1043
BsnI GGCC 4 cut(s) 52, 60, 278, 819
Bsp119I TTCGAA 1 cut(s) 997
Bsp1286I GDGCHC 2 cut(s) 358, 414
Bsp143I GATC 4 cut(s) 151, 664, 1102, 1363
Bsp19I CCATGG 1 cut(s) 887
BspANI GGCC 4 cut(s) 52, 60, 278, 819
BspCNI CTCAG 3 cut(s) 456, 1126, 1369
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 5 cut(s) 307, 411, 855, 913, 1323
BspMAI CTGCAG 3 cut(s) 13, 1069, 1288
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 997
BsrDI GCAATG 3 cut(s) 261, 1039, 1110
BsrI ACTGG 1 cut(s) 1325
BssECI CCNNGG 2 cut(s) 273, 887
BssMI GATC 4 cut(s) 151, 664, 1102, 1363
BssT1I CCWWGG 1 cut(s) 887
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 274, 598
BstAPI GCANNNNNTGC 2 cut(s) 1038, 1283
BstBI TTCGAA 1 cut(s) 997
BstC8I GCNNGC 2 cut(s) 141, 987
BstDEI CTNAG 3 cut(s) 464, 1134, 1377
BstDSI CCRYGG 2 cut(s) 273, 887
BstF5I GGATG 4 cut(s) 154, 336, 1199, 1277
BstH2I RGCGCY 1 cut(s) 986
BstHHI GCGC 1 cut(s) 985
BstKTI GATC 4 cut(s) 154, 667, 1105, 1366
BstMBI GATC 4 cut(s) 151, 664, 1102, 1363
BstMCI CGRYCG 2 cut(s) 61, 227
BstMWI GCNNNNNNNGC 7 cut(s) 73, 89, 260, 842, 1038, 1211, 1283
BstNI CCWGG 1 cut(s) 858
BstNSI RCATGY 1 cut(s) 1349
BstSCI CCNGG 1 cut(s) 856
BstSFI CTRYAG 4 cut(s) 9, 603, 1065, 1284
BstXI CCANNNNNNTGG 1 cut(s) 421
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 4 cut(s) 52, 60, 278, 819
BtgI CCRYGG 2 cut(s) 273, 887
BtsCI GGATG 4 cut(s) 154, 336, 1199, 1277
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 3 cut(s) 932, 969, 1332
Cac8I GCNNGC 2 cut(s) 141, 987
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 1 cut(s) 985
Cfr13I GGNCC 2 cut(s) 50, 277
CsiI ACCWGGT 1 cut(s) 856
Csp6I GTAC 3 cut(s) 292, 566, 898
CviAII CATG 8 cut(s) 494, 574, 691, 863, 888, 1017, 1268, 1346
CviQI GTAC 3 cut(s) 292, 566, 898
DdeI CTNAG 3 cut(s) 464, 1134, 1377
DpnI GATC 4 cut(s) 153, 666, 1104, 1365
DpnII GATC 4 cut(s) 151, 664, 1102, 1363
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
EclXI CGGCCG 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 887
Eco147I AGGCCT 1 cut(s) 819
Eco24I GRGCYC 1 cut(s) 414
Eco52I CGGCCG 1 cut(s) 58
Eco57I CTGAAG 4 cut(s) 98, 770, 1301, 1356
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 887
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 887
FaeI CATG 8 cut(s) 497, 577, 694, 866, 891, 1020, 1271, 1349
FatI CATG 8 cut(s) 493, 573, 690, 862, 887, 1016, 1267, 1345
FauI CCCGC 2 cut(s) 860, 994
FauNDI CATATG 1 cut(s) 1166
FbaI TGATCA 2 cut(s) 1102, 1363
FokI GGATG 4 cut(s) 161, 343, 1186, 1264
FriOI GRGCYC 1 cut(s) 414
FspBI CTAG 6 cut(s) 311, 347, 359, 569, 1187, 1274
GlaI GCGC 1 cut(s) 984
HaeII RGCGCY 1 cut(s) 986
HaeIII GGCC 4 cut(s) 52, 60, 278, 819
HapII CCGG 1 cut(s) 546
HhaI GCGC 1 cut(s) 985
Hin1II CATG 8 cut(s) 497, 577, 694, 866, 891, 1020, 1271, 1349
Hin6I GCGC 1 cut(s) 983
HinP1I GCGC 1 cut(s) 983
HindIII AAGCTT 2 cut(s) 698, 1047
HinfI GANTC 4 cut(s) 468, 1084, 1145, 1340
HpaII CCGG 1 cut(s) 546
HphI GGTGA 1 cut(s) 875
Hpy188I TCNGA 3 cut(s) 156, 1258, 1336
Hpy188III TCNNGA 7 cut(s) 268, 463, 1010, 1075, 1268, 1294, 1319
HpyAV CCTTC 6 cut(s) 73, 153, 469, 535, 710, 1048
HpyCH4III ACNGT 2 cut(s) 274, 598
HpyCH4IV ACGT 2 cut(s) 197, 341
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 89, 260, 842, 1038, 1211, 1283
HpyF3I CTNAG 3 cut(s) 464, 1134, 1377
HpySE526I ACGT 2 cut(s) 197, 341
Hsp92II CATG 8 cut(s) 497, 577, 694, 866, 891, 1020, 1271, 1349
HspAI GCGC 1 cut(s) 983
Ksp22I TGATCA 2 cut(s) 1102, 1363
Kzo9I GATC 4 cut(s) 151, 664, 1102, 1363
LmnI GCTCC 2 cut(s) 409, 1321
LweI GCATC 4 cut(s) 241, 1165, 1286, 1419
MabI ACCWGGT 1 cut(s) 856
MaeI CTAG 6 cut(s) 311, 347, 359, 569, 1187, 1274
MaeII ACGT 2 cut(s) 197, 341
MaeIII GTNAC 4 cut(s) 342, 686, 881, 1149
MalI GATC 4 cut(s) 153, 666, 1104, 1365
MboI GATC 4 cut(s) 151, 664, 1102, 1363
MboII GAAGA 7 cut(s) 145, 463, 771, 836, 1184, 1261, 1349
MfeI CAATTG 1 cut(s) 1359
MhlI GDGCHC 2 cut(s) 358, 414
MlyI GAGTC 2 cut(s) 1078, 1139
MmeI TCCRAC 3 cut(s) 280, 346, 889
MroXI GAANNNNTTC 1 cut(s) 1263
MseI TTAA 5 cut(s) 482, 677, 764, 951, 1441
MslI CAYNNNNRTG 2 cut(s) 419, 498
MspA1I CMGCKG 5 cut(s) 989, 1100, 1133, 1205, 1283
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 1 cut(s) 858
MunI CAATTG 1 cut(s) 1359
Mva1269I GAATGC 2 cut(s) 169, 1043
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 7 cut(s) 73, 89, 260, 842, 1038, 1211, 1283
NcoI CCATGG 1 cut(s) 887
NdeI CATATG 1 cut(s) 1166
NdeII GATC 4 cut(s) 151, 664, 1102, 1363
NlaIII CATG 8 cut(s) 497, 577, 694, 866, 891, 1020, 1271, 1349
NlaIV GGNNCC 5 cut(s) 307, 411, 855, 913, 1323
NmuCI GTSAC 1 cut(s) 881
NspI RCATGY 1 cut(s) 1349
NspV TTCGAA 1 cut(s) 997
PagI TCATGA 1 cut(s) 1267
PceI AGGCCT 1 cut(s) 819
PciI ACATGT 1 cut(s) 1345
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 2 cut(s) 169, 1043
PdmI GAANNNNTTC 1 cut(s) 1263
PfeI GAWTC 2 cut(s) 468, 1340
PflFI GACNNNGTC 1 cut(s) 1087
PflMI CCANNNNNTGG 2 cut(s) 863, 1394
PleI GAGTC 2 cut(s) 1078, 1139
PpsI GAGTC 2 cut(s) 1078, 1139
PscI ACATGT 1 cut(s) 1345
PsiI TTATAA 2 cut(s) 1425, 1434
Psp1406I AACGTT 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 5 cut(s) 307, 411, 855, 913, 1323
PspPI GGNCC 2 cut(s) 50, 277
PstI CTGCAG 3 cut(s) 13, 1069, 1288
PstNI CAGNNNCTG 1 cut(s) 1133
PsyI GACNNNGTC 1 cut(s) 1087
PvuII CAGCTG 2 cut(s) 1100, 1133
RsaI GTAC 3 cut(s) 293, 567, 899
RsaNI GTAC 3 cut(s) 292, 566, 898
RseI CAYNNNNRTG 2 cut(s) 419, 498
SaqAI TTAA 5 cut(s) 482, 677, 764, 951, 1441
Sau3AI GATC 4 cut(s) 151, 664, 1102, 1363
Sau96I GGNCC 2 cut(s) 50, 277
ScaI AGTACT 2 cut(s) 293, 899
SchI GAGTC 2 cut(s) 1078, 1139
ScrFI CCNGG 1 cut(s) 858
SduI GDGCHC 2 cut(s) 358, 414
SexAI ACCWGGT 1 cut(s) 856
SfaNI GCATC 4 cut(s) 241, 1165, 1286, 1419
SfcI CTRYAG 4 cut(s) 9, 603, 1065, 1284
SfuI TTCGAA 1 cut(s) 997
SmiMI CAYNNNNRTG 2 cut(s) 419, 498
SmlI CTYRAG 1 cut(s) 1073
SmoI CTYRAG 1 cut(s) 1073
SseBI AGGCCT 1 cut(s) 819
SspI AATATT 1 cut(s) 1027
SspMI CTAG 6 cut(s) 311, 347, 359, 569, 1187, 1274
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 2 cut(s) 274, 598
TaiI ACGT 2 cut(s) 200, 344
TaqI TCGA 4 cut(s) 223, 249, 997, 1143
TatI WGTACW 2 cut(s) 291, 897
TauI GCSGC 2 cut(s) 45, 60
TfiI GAWTC 2 cut(s) 468, 1340
Tru1I TTAA 5 cut(s) 482, 677, 764, 951, 1441
Tru9I TTAA 5 cut(s) 482, 677, 764, 951, 1441
TscAI CASTG 3 cut(s) 932, 976, 1332
TseFI GTSAC 1 cut(s) 881
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 5 cut(s) 362, 505, 1050, 1256, 1284
TspGWI ACGGA 2 cut(s) 48, 421
TspRI CASTG 3 cut(s) 932, 976, 1332
Tth111I GACNNNGTC 1 cut(s) 1087
Van91I CCANNNNNTGG 2 cut(s) 863, 1394
XapI RAATTY 5 cut(s) 827, 975, 993, 1005, 1428
XceI RCATGY 1 cut(s) 1349
XmnI GAANNNNTTC 1 cut(s) 1263
XspI CTAG 6 cut(s) 311, 347, 359, 569, 1187, 1274
ZrmI AGTACT 2 cut(s) 293, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.