Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

9516638 .. 9517458

Gene Structure 821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1109300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAATCAGATGGCTCAATTGCGAAACCATGGAGCTTATGCACAACGCAACAGGTGGAAGATTTCAAGACCGTTATAAGAATTTTTCCACTATGGTCTACAGCTTTATTCTTAGCTACCCCAATAGCAATCCAATCCAGCATGTCAGTCCTGCAGGCTCTAACCATGGACCGTCACATTGGCCCCCATTTTACATTGCCATCTAGTTCTGTTATAGTCGTTGTTTTATTCTCCACATCCATTTTTCTAACCCTAATTGATAGGTTCTTATGCCCCATGTGGCAGAAGTTCACTGGTCAGTCTCTATCGCCCCTCCAGCGTGTAGGAGTAGGACACATCTTAACCATTCTCAGCATGGCTGTTTCAGCAGTGATGGAGTCCAAAAGGCTCAAAATAGTGCAAGAACACCACCTCCAAGACCAGCCCGGTACTATTGTTCCAATGTCGATCTTTTGGCTTTTCCCACAGTTAGTTTTGGTAGGCATTGGAGAAGCATTTCATTTTCCAGGACAAGTTGCATTGTATTATCAAGAATTTCCCATGTCGCTGCGAAGCACATCGACGGCCATGATCTCATTGATTATTGGGATTGCATATTATGTAAGCACAGGTGTGGTTAATGTGGTCCAAAGGGTTACTGGATGGTTACCAAACAATCTAAACAATGGGAAGCTGGACAATGTTTATTGGATGCTAGCTGTGCTGGGGGTGATAAACTTTGGCTATTATTTGGTGTGTAGTAAGTTGTACAAGTATCAAAATGTAAAGGGTGCAGAAGGTAGTCCTGACCCAGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

267

Amino Acids

29.58

Weight (kDa)

8.73

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	5 - 213	3.2e-35	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	81, 533
AfaI	GTAC	2 cut(s)	430, 749
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	505
AleI	CACNNNNGTG	1 cut(s)	611
AloI	GAACNNNNNNTCC	2 cut(s)	396, 428
AluBI	AGCT	6 cut(s)	36, 104, 116, 673, 698, 798
AluI	AGCT	6 cut(s)	36, 104, 116, 673, 698, 798
Alw26I	GTCTC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	181, 564
ApeKI	GCWGC	1 cut(s)	547
ApoI	RAATTY	2 cut(s)	81, 533
Asp700I	GAANNNNTTC	1 cut(s)	495
AspS9I	GGNCC	3 cut(s)	169, 182, 625
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	721
AsuNHI	GCTAGC	1 cut(s)	694
AvaII	GGWCC	2 cut(s)	169, 625
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	4 cut(s)	5, 208, 367, 636
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	3 cut(s)	204, 695, 799
BfmI	CTRYAG	2 cut(s)	99, 152
BisI	GCNGC	1 cut(s)	548
BlsI	GCNGC	1 cut(s)	549
Bme1390I	CCNGG	2 cut(s)	426, 507
Bme18I	GGWCC	2 cut(s)	169, 625
BmgT120I	GGNCC	3 cut(s)	169, 182, 625
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	426, 507
BmsI	GCATC	1 cut(s)	681
BmtI	GCTAGC	1 cut(s)	698
BpmI	CTGGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	29, 165
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bse1I	ACTGG	2 cut(s)	298, 643
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	29, 165
BseGI	GGATG	3 cut(s)	236, 647, 696
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	2 cut(s)	298, 643
BseXI	GCAGC	1 cut(s)	534
BseYI	CCCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	792
BshFI	GGCC	2 cut(s)	183, 566
BsiSI	CCGG	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	183, 566
Bsp1407I	TGTACA	1 cut(s)	747
Bsp143I	GATC	2 cut(s)	447, 570
Bsp19I	CCATGG	2 cut(s)	29, 165
BspANI	GGCC	2 cut(s)	183, 566
BspCNI	CTCAG	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	156
BspOI	GCTAGC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	298, 643
BssECI	CCNNGG	2 cut(s)	29, 165
BssMI	GATC	2 cut(s)	447, 570
BssT1I	CCWWGG	2 cut(s)	29, 165
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	73, 173, 468
BstAUI	TGTACA	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	156, 696
BstDEI	CTNAG	2 cut(s)	112, 350
BstDSI	CCRYGG	2 cut(s)	29, 165
BstEII	GGTNACC	1 cut(s)	645
BstF5I	GGATG	3 cut(s)	236, 647, 696
BstKTI	GATC	2 cut(s)	450, 573
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	447, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 365, 700
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	645
BstSCI	CCNGG	2 cut(s)	424, 505
BstSFI	CTRYAG	2 cut(s)	99, 152
BstV1I	GCAGC	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	183, 566
BtgI	CCRYGG	2 cut(s)	29, 165
BtsCI	GGATG	3 cut(s)	236, 647, 696
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	291, 375
Cac8I	GCNNGC	2 cut(s)	156, 696
Cfr13I	GGNCC	3 cut(s)	169, 182, 625
Csp6I	GTAC	2 cut(s)	429, 748
CviAII	CATG	7 cut(s)	30, 142, 166, 277, 355, 541, 568
CviQI	GTAC	2 cut(s)	429, 748
DdeI	CTNAG	2 cut(s)	112, 350
DpnI	GATC	2 cut(s)	449, 572
DpnII	GATC	2 cut(s)	447, 570
EaeI	YGGCCR	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	29, 165
Eco47I	GGWCC	2 cut(s)	169, 625
Eco91I	GGTNACC	1 cut(s)	645
EcoO65I	GGTNACC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	29, 165
ErhI	CCWWGG	2 cut(s)	29, 165
FaeI	CATG	7 cut(s)	33, 145, 169, 280, 358, 544, 571
FatI	CATG	7 cut(s)	29, 141, 165, 276, 354, 540, 567
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	548
FokI	GGATG	3 cut(s)	223, 654, 703
Fsp4HI	GCNGC	1 cut(s)	548
FspBI	CTAG	3 cut(s)	204, 695, 799
GluI	GCNGC	1 cut(s)	548
GsaI	CCCAGC	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	183, 566
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	7 cut(s)	33, 145, 169, 280, 358, 544, 571
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	2 cut(s)	99, 291
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	67, 530, 785
Hpy8I	GTNNAC	2 cut(s)	99, 291
Hpy99I	CGWCG	1 cut(s)	565
HpyAV	CCTTC	1 cut(s)	770
HpyCH4III	ACNGT	3 cut(s)	73, 173, 468
HpyCH4V	TGCA	6 cut(s)	42, 154, 400, 518, 593, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 365, 700
HpyF3I	CTNAG	2 cut(s)	112, 350
Hsp92II	CATG	7 cut(s)	33, 145, 169, 280, 358, 544, 571
Kzo9I	GATC	2 cut(s)	447, 570
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	1 cut(s)	681
MaeI	CTAG	3 cut(s)	204, 695, 799
MaeIII	GTNAC	3 cut(s)	173, 634, 645
MalI	GATC	2 cut(s)	449, 572
MboI	GATC	2 cut(s)	447, 570
MboII	GAAGA	1 cut(s)	71
MfeI	CAATTG	1 cut(s)	18
MluCI	AATT	4 cut(s)	18, 81, 255, 533
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	2 cut(s)	323, 422
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	2 cut(s)	341, 618
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	426, 507
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	316, 365, 700
NciI	CCSGG	1 cut(s)	426
NcoI	CCATGG	2 cut(s)	29, 165
NdeII	GATC	2 cut(s)	447, 570
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	7 cut(s)	33, 145, 169, 280, 358, 544, 571
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	611
PdmI	GAANNNNTTC	1 cut(s)	495
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	549
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	505
PspEI	GGTNACC	1 cut(s)	645
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	169, 182, 625
PstI	CTGCAG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	430, 749
RsaNI	GTAC	2 cut(s)	429, 748
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	2 cut(s)	341, 618
SatI	GCNGC	1 cut(s)	548
Sau3AI	GATC	2 cut(s)	447, 570
Sau96I	GGNCC	3 cut(s)	169, 182, 625
SbfI	CCTGCAGG	1 cut(s)	156
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	426, 507
SdaI	CCTGCAGG	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	681
SfcI	CTRYAG	2 cut(s)	99, 152
SinI	GGWCC	2 cut(s)	169, 625
SmiMI	CAYNNNNRTG	1 cut(s)	611
Sse8387I	CCTGCAGG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	18, 81, 255, 533
SspMI	CTAG	3 cut(s)	204, 695, 799
StyD4I	CCNGG	2 cut(s)	424, 505
StyI	CCWWGG	2 cut(s)	29, 165
TaaI	ACNGT	3 cut(s)	73, 173, 468
TaqI	TCGA	2 cut(s)	446, 560
TasI	AATT	4 cut(s)	18, 81, 255, 533
TatI	WGTACW	1 cut(s)	747
Tru1I	TTAA	2 cut(s)	341, 618
Tru9I	TTAA	2 cut(s)	341, 618
TscAI	CASTG	2 cut(s)	298, 375
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	17, 488
TspRI	CASTG	2 cut(s)	298, 375
VpaK11BI	GGWCC	2 cut(s)	169, 625
XapI	RAATTY	2 cut(s)	81, 533
XceI	RCATGY	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	2 cut(s)	352, 635
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	3 cut(s)	204, 695, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.