Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

67348252 .. 67351686

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCGGGTTCTGGTGGTAGACGAGGAGCTGTAATGTGCTTGACGCTTGCCGCTGGAGGATGGCAAGCAAATTTGATTACTCTTTCTTGGGCTGTTTTCCTGTCATCTTCATCTCTTCTGGGAATGGTCTTATTCACTTTGACTGCAACTGTTGACTCATTGAGGCCTCCAGCATGTGAGAATGGATCAATCTCATGCAGACCACCATCAAGAATTCAGTTTGCAGTCCTCTATGCCAGTATAGATCTGGCATCAATTGGGGTGGGAGGCGATTGCTTTACTATAGCAGCAATAGGAGCAAATCAATTTGATAAACTGAAATATCAAGGGATTTTCTTTAACTGGTTTTTCTTCACACTATATACAACTTCTGTCATAAGTGCTACTGCCATTGTCTATATTGAGGACAATCTTCCTGAACCATGCTGCGCTGAAACTGAAGGAGACTGCAATGCGGATGGCTCAATTGCAAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

160

Amino Acids

16.8

Weight (kDa)

4.55

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	31 - 137	1.4e-10	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	2 cut(s)	51, 455
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	70, 213
AcuI	CTGAAG	1 cut(s)	459
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	287, 426
ApoI	RAATTY	2 cut(s)	70, 213
AspLEI	GCGC	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	299, 413
BccI	CCATC	3 cut(s)	54, 214, 452
BcoDI	GTCTC	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	3 cut(s)	51, 288, 427
BlsI	GCNGC	3 cut(s)	52, 289, 428
BmsI	GCATC	1 cut(s)	260
BpmI	CTGGAG	2 cut(s)	75, 153
Bse1I	ACTGG	2 cut(s)	237, 347
Bse3DI	GCAATG	1 cut(s)	457
BseGI	GGATG	2 cut(s)	65, 463
BseMI	GCAATG	1 cut(s)	457
BseNI	ACTGG	2 cut(s)	237, 347
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	299, 413
BshFI	GGCC	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	185, 244
BspACI	CCGC	2 cut(s)	51, 455
BspANI	GGCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	237, 347
BssMI	GATC	2 cut(s)	185, 244
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	48, 66
BstF5I	GGATG	2 cut(s)	65, 463
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	2 cut(s)	188, 247
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	2 cut(s)	185, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	299, 413
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	65, 463
Cac8I	GCNNGC	2 cut(s)	48, 66
CfoI	GCGC	1 cut(s)	431
CseI	GACGC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	4 cut(s)	174, 195, 423, 477
CviJI	RGCY	5 cut(s)	29, 92, 166, 462, 475
CviKI_1	RGCY	5 cut(s)	29, 92, 166, 462, 475
DpnI	GATC	2 cut(s)	187, 246
DpnII	GATC	2 cut(s)	185, 244
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	213
FaeI	CATG	4 cut(s)	177, 198, 426, 480
FatI	CATG	4 cut(s)	173, 194, 422, 476
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	51, 288, 427
FokI	GGATG	2 cut(s)	72, 470
Fsp4HI	GCNGC	3 cut(s)	51, 288, 427
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	3 cut(s)	51, 288, 427
GsuI	CTGGAG	2 cut(s)	75, 153
HaeIII	GGCC	1 cut(s)	166
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	4 cut(s)	177, 198, 426, 480
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	20, 154
Hpy188III	TCNNGA	2 cut(s)	210, 416
Hpy8I	GTNNAC	2 cut(s)	20, 154
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	146, 198, 224, 450, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
Hsp92II	CATG	4 cut(s)	177, 198, 426, 480
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	185, 244
LmnI	GCTCC	2 cut(s)	26, 296
LpnPI	CCDG	8 cut(s)	39, 104, 113, 183, 233, 250, 328, 429
Lsp1109I	GCAGC	2 cut(s)	299, 413
LweI	GCATC	1 cut(s)	260
MalI	GATC	2 cut(s)	187, 246
MboI	GATC	2 cut(s)	185, 244
MboII	GAAGA	4 cut(s)	99, 107, 343, 404
MfeI	CAATTG	2 cut(s)	255, 465
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	5 cut(s)	70, 213, 255, 305, 465
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	17, 50, 156, 177, 239, 260, 397
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	255, 465
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	185, 244
NlaIII	CATG	4 cut(s)	177, 198, 426, 480
NspI	RCATGY	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	52, 289, 428
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	51, 288, 427
Sau3AI	GATC	2 cut(s)	185, 244
SchI	GAGTC	1 cut(s)	149
SetI	ASST	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	260
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	5 cut(s)	70, 213, 255, 305, 465
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	2 cut(s)	51, 455
StuI	AGGCCT	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	5 cut(s)	70, 213, 255, 305, 465
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	2 cut(s)	287, 426
TspDTI	ATGAA	1 cut(s)	99
XapI	RAATTY	2 cut(s)	70, 213
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.