Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

9514037 .. 9515238

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1109100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATGAGTCCCTCTCCCACACTGATGCACATATCCCATCAGATTCTGGTAAAAGACGCGGTGGTTGGGTCACTTTCCCGTTCATCATTGGGGCTTTGGGAGGCTTGACACTTGCAGCTGGGGGATGGATCTCAAATTTGATTGTATTTCTAATTAAAGAGTTCAATATAAACAGCATTGATGCAGCCCAGATCGCAAACGTGGTTAACGGTTCTTTCAGTTTTTTCCCAATCATTGGAGCAATCATAGCTGACTCTTTCTTTGGCTCATTCTCCGTTATCTCAATATCGTCATGCATTTCCTTGCTGGTAATAAGATGGCATCGTTCTCTTAGTTTTAACCGCAACGCTGAATTCGTTGAAGCCTCAACCTTGTGCTACCGGCTCAGAGTTATGCCAACCGACCTCGGCATTACAGTATGCAGTCTTGTACACCGGCGTAACTGTCGCATCTCTTGGCTTGGGAGGTACCCGCTATACCTTGGCAACACTGGGAGCCAATCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

170

Amino Acids

18.52

Weight (kDa)

8.86

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccII	CGCG	1 cut(s)	60
AciI	CCGC	3 cut(s)	60, 343, 473
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	136, 353
AfaI	GTAC	2 cut(s)	432, 470
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	166, 362
AluBI	AGCT	2 cut(s)	119, 251
AluI	AGCT	2 cut(s)	119, 251
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	116, 185
ApoI	RAATTY	2 cut(s)	136, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp718I	GGTACC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	128, 197
BccI	CCATC	3 cut(s)	46, 120, 312
BisI	GCNGC	2 cut(s)	117, 186
BlsI	GCNGC	2 cut(s)	118, 187
BmiI	GGNNCC	2 cut(s)	470, 497
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	4 cut(s)	16, 172, 331, 459
BmuI	ACTGGG	1 cut(s)	501
BplI	GAGNNNNNCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	406, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	2 cut(s)	381, 435
Bse1I	ACTGG	1 cut(s)	496
BseDI	CCNNGG	2 cut(s)	406, 481
BseGI	GGATG	2 cut(s)	10, 131
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	128, 197
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	382, 436
BslI	CCNNNNNNNGG	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	129, 192
BspACI	CCGC	3 cut(s)	60, 343, 473
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	470, 497
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	468
BsrFI	RCCGGY	2 cut(s)	381, 435
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	2 cut(s)	381, 435
BssECI	CCNNGG	2 cut(s)	406, 481
BssMI	GATC	2 cut(s)	129, 192
BssT1I	CCWWGG	1 cut(s)	481
Bst4CI	ACNGT	3 cut(s)	212, 418, 446
BstAUI	TGTACA	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	332, 386
BstF5I	GGATG	2 cut(s)	10, 131
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	132, 195
BstMBI	GATC	2 cut(s)	129, 192
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 248
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	128, 197
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	10, 131
BtsIMutI	CAGTG	2 cut(s)	21, 489
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr10I	RCCGGY	2 cut(s)	381, 435
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	431, 469
CviAII	CATG	1 cut(s)	294
CviQI	GTAC	2 cut(s)	431, 469
DdeI	CTNAG	2 cut(s)	332, 386
DpnI	GATC	2 cut(s)	131, 194
DpnII	GATC	2 cut(s)	129, 192
Eco130I	CCWWGG	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	481
EcoT22I	ATGCAT	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	1 cut(s)	297
FaiI	YATR	7 cut(s)	33, 170, 248, 295, 395, 421, 478
FatI	CATG	1 cut(s)	293
FauI	CCCGC	1 cut(s)	480
Fnu4HI	GCNGC	2 cut(s)	117, 186
FokI	GGATG	2 cut(s)	17, 138
Fsp4HI	GCNGC	2 cut(s)	117, 186
GluI	GCNGC	2 cut(s)	117, 186
GsaI	CCCAGC	1 cut(s)	123
HapII	CCGG	2 cut(s)	382, 436
HgaI	GACGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	8, 44, 254
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	2 cut(s)	382, 436
Hpy166II	GTNNAC	2 cut(s)	208, 433
Hpy188I	TCNGA	2 cut(s)	43, 389
Hpy8I	GTNNAC	2 cut(s)	208, 433
HpyCH4III	ACNGT	3 cut(s)	212, 418, 446
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	29, 116, 185, 297, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 248
HpyF3I	CTNAG	2 cut(s)	332, 386
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	297
KpnI	GGTACC	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	129, 192
LmnI	GCTCC	2 cut(s)	239, 495
LpnPI	CCDG	7 cut(s)	33, 105, 203, 293, 395, 449, 477
Lsp1109I	GCAGC	2 cut(s)	128, 197
LweI	GCATC	4 cut(s)	16, 172, 331, 459
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	70, 440
MalI	GATC	2 cut(s)	131, 194
MboI	GATC	2 cut(s)	129, 192
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	4 cut(s)	136, 153, 353, 504
MlyI	GAGTC	2 cut(s)	17, 248
MnlI	CCTC	5 cut(s)	23, 95, 376, 416, 459
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	3 cut(s)	156, 207, 339
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	2 cut(s)	382, 436
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	194, 248
NdeII	GATC	2 cut(s)	129, 192
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	2 cut(s)	470, 497
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	118, 187
PleI	GAGTC	2 cut(s)	16, 248
PpsI	GAGTC	2 cut(s)	16, 248
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	470, 497
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	432, 470
RsaNI	GTAC	2 cut(s)	431, 469
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	156, 207, 339
SatI	GCNGC	2 cut(s)	117, 186
Sau3AI	GATC	2 cut(s)	129, 192
SchI	GAGTC	2 cut(s)	17, 248
SetI	ASST	7 cut(s)	121, 204, 253, 374, 408, 470, 483
SfaNI	GCATC	4 cut(s)	16, 172, 331, 459
SgrAI	CRCCGGYG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	136, 153, 353, 504
SsiI	CCGC	3 cut(s)	60, 343, 473
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	3 cut(s)	212, 418, 446
TaiI	ACGT	1 cut(s)	204
TasI	AATT	4 cut(s)	136, 153, 353, 504
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	156, 207, 339
Tru9I	TTAA	3 cut(s)	156, 207, 339
TscAI	CASTG	2 cut(s)	28, 496
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	116, 185
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	2 cut(s)	28, 496
Van91I	CCANNNNNTGG	1 cut(s)	236
XapI	RAATTY	2 cut(s)	136, 353
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.