Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024335.1

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 742

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgtccgccctttggcttgtggcaccactgtcggttatgggaatcgctgaggcatttcatttcccaggacaagtttcattgtgctatcaagaatttccaaaatcattgagaagtacttccactgctatgatctcattgttgattggaatcgggtattatcttagcactgcagtcactgatttggtagacaagaccacaaagtggttaccagatgatataaatcaagggaggttggataatatgttttggatgttggtagtgattggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

89

Amino Acids

9.89

Weight (kDa)

4.94

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	92
AdeI	CACNNNGTG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	12, 201
AjnI	CCWGG	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	168
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	48
BsaBI	GATNNNNATC	2 cut(s)	146, 219
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 201
Bse8I	GATNNNNATC	2 cut(s)	146, 219
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	2 cut(s)	146, 219
BseLI	CCNNNNNNNGG	2 cut(s)	12, 201
BseMII	CTCAG	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	12, 201
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	48, 161
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	66
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	2 cut(s)	120, 165
BtsIMutI	CAGTG	4 cut(s)	26, 120, 165, 174
CaiI	CAGNNNCTG	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	1 cut(s)	16
CviKI_1	RGCY	1 cut(s)	16
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	48, 161
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	64
FaiI	YATR	4 cut(s)	38, 128, 218, 242
FblI	GTMKAC	1 cut(s)	186
FokI	GGATG	1 cut(s)	262
HinfI	GANTC	2 cut(s)	42, 147
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	48, 161
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	3 cut(s)	51, 78, 222
MaeIII	GTNAC	2 cut(s)	172, 204
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MluCI	AATT	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	2 cut(s)	43, 222
MroXI	GAANNNNTTC	1 cut(s)	115
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	42, 147
PflMI	CCANNNNNTGG	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	64
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	168
SgeI	CNNG	9 cut(s)	29, 77, 78, 83, 101, 163, 202, 221, 236
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	30
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	42, 147
TscAI	CASTG	4 cut(s)	33, 127, 172, 181
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	47, 66
TspRI	CASTG	4 cut(s)	33, 127, 172, 181
Van91I	CCANNNNNTGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	115
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.