Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

12752030 .. 12752801

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAAGTTGAAGGGAAGCTCTCTACCCACTCCACATCCAAAGAAGAAGAAGGTGAAGTTCATAGGGTTTGCGATGAGAATCAGGATTCTAAAGGAGGCTGGACCACCTTTCCCTTTGTTATTGCAACTGTGTTGGGTCTCTCAGTAGCAGTCGGCGGGTGGGGAGCAAATTTGATAGTGTTTCTGATAACAAAATTCAATGTGAAGACCATAACCGCTATACAGATCAATAACATCATCCTTGGTACGACCAACCTCCTCCCCATCGCTGGAGCCTTCATCGCTGATTCATTCTTCACCATATTTTCTGTCGTCAGTGCCTTTTCCTTCATTTCTTTACTGGTAATCAATCATAACTTCAGCTTACCGTGTGCCATTTTACATGTTGTGAGAATGATGGAGAAGGTCTTTAATTTATATGGCGCGATGGTAGGTCTTAACCTTACTCCAGCGAAAATGTTCTTCCTTATATTAAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

160

Amino Acids

17.5

Weight (kDa)

6.9

Isoelectric Point (pI)

25.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	425
AciI	CCGC	2 cut(s)	156, 216
AcsI	RAATTY	2 cut(s)	169, 194
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	11, 199
AluBI	AGCT	2 cut(s)	19, 363
AluI	AGCT	2 cut(s)	19, 363
Alw26I	GTCTC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	169, 194
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	65, 289
AvaII	GGWCC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	212
BccI	CCATC	3 cut(s)	272, 391, 421
BcoDI	GTCTC	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	2 cut(s)	291, 432
BsaBI	GATNNNNATC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	35, 237
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	156, 216
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	130, 369
BstDEI	CTNAG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	35, 237
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	386
BstUI	CGCG	1 cut(s)	425
BstV2I	GAAGAC	1 cut(s)	212
BtgZI	GCGATG	4 cut(s)	87, 250, 265, 440
BtsCI	GGATG	2 cut(s)	35, 237
BtsIMutI	CAGTG	1 cut(s)	322
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	4 cut(s)	19, 99, 275, 363
CviKI_1	RGCY	4 cut(s)	19, 99, 275, 363
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	386
FaiI	YATR	9 cut(s)	63, 212, 221, 302, 354, 384, 418, 420, 470
FatI	CATG	1 cut(s)	382
FauI	CCCGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	22, 224
GlaI	GCGC	1 cut(s)	424
GsuI	CTGGAG	2 cut(s)	291, 432
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	3 cut(s)	79, 86, 287
HphI	GGTGA	2 cut(s)	65, 289
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	83
HpyAV	CCTTC	5 cut(s)	5, 44, 286, 337, 397
HpyCH4III	ACNGT	2 cut(s)	130, 369
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	164, 272
LpnPI	CCDG	5 cut(s)	68, 85, 255, 326, 462
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	5 cut(s)	56, 59, 217, 286, 454
MluCI	AATT	3 cut(s)	169, 194, 412
MnlI	CCTC	3 cut(s)	89, 266, 269
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	3 cut(s)	411, 438, 473
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	386
PciI	ACATGT	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	79, 86, 287
PscI	ACATGT	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	411, 438, 473
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	102
SetI	ASST	8 cut(s)	21, 55, 110, 258, 365, 408, 436, 444
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	3 cut(s)	169, 194, 412
SsiI	CCGC	2 cut(s)	156, 216
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	130, 369
TasI	AATT	3 cut(s)	169, 194, 412
TfiI	GAWTC	3 cut(s)	79, 86, 287
Tru1I	TTAA	3 cut(s)	411, 438, 473
Tru9I	TTAA	3 cut(s)	411, 438, 473
TscAI	CASTG	1 cut(s)	322
TspDTI	ATGAA	4 cut(s)	50, 268, 279, 319
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	2 cut(s)	169, 194
XceI	RCATGY	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.