Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

60995560 .. 60997856

Gene Structure 2297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG439800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTCTTATTCACTTTGACTGCAACTGTTGACTCATTGAGGCCTCCAGCATGTGAGAATGGATCAATCTCATGCAGACCACCATCAAGAATTCAGTTTGCAGTCCTCTATGCCAGTATAGATCTAGCATCAAGTGGGGTGGGAGGCGATCGCTTTACTATAGCAACAATAGGAGCAAATCAATTTGATAAACTGAAATATCAAGGGATTTTCTTTAACTGGTTTTTCTTCACACTATATACAGCTTCTGTCATAAGTGCTACTGCCATTGTCTATATTGAGGACATTGTCAGTTGGGGATTAGGATTTGGCCTATGTGCTGTTGCTAATTTGATTGGTTTAATCATTTTCTTTATGGGGAGCCATTTATACCATCACGATAAGCCACAGTGTAGCCCATTCGATCATGAGTTTAGCTCGTGTTATGGTCGCAGTATCCAGAAAAGGAAGGTCCTACTCTCATCCGGGATAGATGATGACCACTACAGGAATGATGGAAAGGCAGAGATGGTGCATGCAACACCTAAAAAGAGTTTCGGGTGCAAATTTGACTTACCTCCCATGTCCATATACTTGCCTGTTTATAACCTTCATCTTCCTTGTATATTAAGAAACCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

207

Amino Acids

23.05

Weight (kDa)

7.03

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 169	9.1e-24	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	90, 545
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	2 cut(s)	245, 417
AluI	AGCT	2 cut(s)	245, 417
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	41, 310
ApoI	RAATTY	2 cut(s)	90, 545
AsiSI	GCGATCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	418
BccI	CCATC	4 cut(s)	91, 381, 488, 502
BciT130I	CCWGG	1 cut(s)	617
BciVI	GTATCC	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	466
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	2 cut(s)	159, 484
BfuI	GTATCC	1 cut(s)	446
BglII	AGATCT	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	466, 617
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	2 cut(s)	466, 617
BmsI	GCATC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	466
Bse1I	ACTGG	2 cut(s)	114, 224
BseBI	CCWGG	1 cut(s)	617
BseGI	GGATG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	114, 224
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	43, 312
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	465
BsnI	GGCC	2 cut(s)	43, 312
Bsp143I	GATC	4 cut(s)	62, 121, 148, 403
BspANI	GGCC	2 cut(s)	43, 312
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	114, 224
BssMI	GATC	4 cut(s)	62, 121, 148, 403
BssSI	CACGAG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	28, 390
BstC8I	GCNNGC	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	461
BstKTI	GATC	4 cut(s)	65, 124, 151, 406
BstMBI	GATC	4 cut(s)	62, 121, 148, 403
BstMCI	CGRYCG	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	2 cut(s)	54, 518
BstSCI	CCNGG	2 cut(s)	464, 615
BstSFI	CTRYAG	2 cut(s)	159, 484
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	43, 312
BtsCI	GGATG	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	516
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	451
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	5 cut(s)	51, 72, 407, 515, 562
CviJI	RGCY	7 cut(s)	43, 245, 312, 363, 385, 396, 417
CviKI_1	RGCY	7 cut(s)	43, 245, 312, 363, 385, 396, 417
DpnI	GATC	4 cut(s)	64, 123, 150, 405
DpnII	GATC	4 cut(s)	62, 121, 148, 403
Eco147I	AGGCCT	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	615
FaeI	CATG	5 cut(s)	54, 75, 410, 518, 565
FatI	CATG	5 cut(s)	50, 71, 406, 514, 561
FokI	GGATG	1 cut(s)	448
FspBI	CTAG	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	43, 312
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	5 cut(s)	54, 75, 410, 518, 565
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	465
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188III	TCNNGA	4 cut(s)	87, 377, 407, 439
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	442, 599
HpyCH4III	ACNGT	2 cut(s)	28, 390
HpyCH4V	TGCA	6 cut(s)	23, 75, 101, 514, 518, 543
Hsp92II	CATG	5 cut(s)	54, 75, 410, 518, 565
Kzo9I	GATC	4 cut(s)	62, 121, 148, 403
LmnI	GCTCC	2 cut(s)	173, 360
LpnPI	CCDG	8 cut(s)	60, 127, 205, 452, 472, 478, 591, 602
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	125
MalI	GATC	4 cut(s)	64, 123, 150, 405
MboI	GATC	4 cut(s)	62, 121, 148, 403
MboII	GAAGA	2 cut(s)	220, 587
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	4 cut(s)	90, 182, 328, 545
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	33, 54, 116, 137, 274, 567
MseI	TTAA	3 cut(s)	216, 341, 608
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	466, 617
MvaI	CCWGG	1 cut(s)	617
NciI	CCSGG	1 cut(s)	466
NdeII	GATC	4 cut(s)	62, 121, 148, 403
NlaIII	CATG	5 cut(s)	54, 75, 410, 518, 565
NlaIV	GGNNCC	1 cut(s)	362
NspI	RCATGY	2 cut(s)	54, 518
PaeI	GCATGC	1 cut(s)	518
PagI	TCATGA	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	43
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	464
Ple19I	CGATCG	1 cut(s)	151
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	451
PsiI	TTATAA	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	151
RgaI	GCGATCGC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	216, 341, 608
Sau3AI	GATC	4 cut(s)	62, 121, 148, 403
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	466, 617
SetI	ASST	7 cut(s)	247, 419, 453, 526, 559, 591, 618
SfaAI	GCGATCGC	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	2 cut(s)	159, 484
SgfI	GCGATCGC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	451
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	4 cut(s)	90, 182, 328, 545
SseBI	AGGCCT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	464, 615
TaaI	ACNGT	2 cut(s)	28, 390
TaqI	TCGA	1 cut(s)	402
TasI	AATT	4 cut(s)	90, 182, 328, 545
Tru1I	TTAA	3 cut(s)	216, 341, 608
Tru9I	TTAA	3 cut(s)	216, 341, 608
TscAI	CASTG	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	2 cut(s)	90, 545
XceI	RCATGY	2 cut(s)	54, 518
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.