Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

55643910 .. 55646147

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG322600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAGCCTCTGAGATTCAAAGAGGTTGTGATGAGAATACTGAGGACCCTAAACGAGGAGGCTGGACAACCTTCCCTTTTGTTATTGCCTTGAAAATTGAAGAAGACAAACAATTTGAAGGCTCGTATGGAAACCCATGGAGGCTATGCACTGTGGAAGAAGTGGAAGACCTCAAAACCCTAATTAAGATCATGCCACTGTGGTCTACTGGCATCTTCCTAAGCACACCAATAGGCATTTTCCGCAGCCTTACTATACTCCAAGCCCTAACCATGGATAGACACCTTGGTCCACACTTCAAAATCCCTGCTGCTTCATTTCTAGTGCTCAACCTCTTAGCCACAGCCATCTCCATCTTTATAATTGACCGCTTCATACTCCTCAAGTACAAGAATCTCACTGGACGGACTTTAACACCGATCCAGCGAATAGGGTTCGGTCACATCATCAACATTATTTCTGTAATTGGTTCTGCCCTAATCGAAAGAAGACGACTTGGAGTGGTAAGAGCACATAGCCTCACGAACCAACCTGGTTCAGAGGTGCCCATGTCCGCCCTTTGGCTTGTGGTACCACTGTCGGTTATGGGAATCGCTGAGGCATTTCATTTCCCAGGACAAGTTTCATTGTGCTATCAAGAATTTCCAAAATCATTGAGAAGTACTTCCACTGCTATGATCTCATTGTTGATTGGAATTGGGTATTATCTTAGCACTGCAGTCACTGATTTGGTAGACAAGACCACAAAGTGGTTACCAGATGATATAAATCAAGGGAGGTTGGATAATATGTTTTGGATGTTGGTAGTGATTGGGGTGGTGAATTTTGGTTACTTCATAACTTGTGCTAAGTTCTTTGTGTATCAAAACCAAAATGTAGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

295

Amino Acids

33.11

Weight (kDa)

8.31

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	36 - 250	4.8e-32	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AasI	GACNNNNNNGTC	1 cut(s)	288
Acc65I	GGTACC	1 cut(s)	571
AccB1I	GGYRCC	2 cut(s)	544, 571
AccB7I	CCANNNNNTGG	1 cut(s)	750
AccI	GTMKAC	2 cut(s)	206, 735
AciI	CCGC	3 cut(s)	244, 370, 555
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	641, 823
AdeI	CACNNNGTG	1 cut(s)	750
AfaI	GTAC	3 cut(s)	389, 573, 664
AfiI	CCNNNNNNNGG	4 cut(s)	56, 274, 561, 750
AgsI	TTSAA	5 cut(s)	20, 94, 101, 119, 301
AjnI	CCWGG	2 cut(s)	532, 613
Alw21I	GWGCWC	2 cut(s)	330, 514
AlwI	GGATC	1 cut(s)	415
AlwNI	CAGNNNCTG	1 cut(s)	725
ApeKI	GCWGC	2 cut(s)	246, 311
ApoI	RAATTY	2 cut(s)	641, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp700I	GAANNNNTTC	1 cut(s)	664
Asp718I	GGTACC	1 cut(s)	571
AspS9I	GGNCC	2 cut(s)	46, 290
AsuHPI	GGTGA	1 cut(s)	832
AvaII	GGWCC	2 cut(s)	46, 290
BaeGI	GKGCMC	1 cut(s)	549
BaeI	ACNNNNGTAYC	2 cut(s)	563, 596
BanI	GGYRCC	2 cut(s)	544, 571
BbsI	GAAGAC	3 cut(s)	111, 174, 496
Bbv12I	GWGCWC	2 cut(s)	330, 514
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	258, 298
BccI	CCATC	2 cut(s)	356, 362
BciT130I	CCWGG	2 cut(s)	534, 615
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	2 cut(s)	247, 312
BlsI	GCNGC	2 cut(s)	248, 313
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	2 cut(s)	534, 615
Bme18I	GGWCC	2 cut(s)	46, 290
BmgT120I	GGNCC	2 cut(s)	46, 290
BmiI	GGNNCC	3 cut(s)	48, 546, 573
BmrFI	CCNGG	2 cut(s)	534, 615
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	3 cut(s)	111, 174, 496
Bpu10I	CCTNAGC	2 cut(s)	221, 597
BpuEI	CTTGAG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	768
BsaJI	CCNNGG	4 cut(s)	137, 273, 286, 613
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 274, 561, 750
Bse1I	ACTGG	2 cut(s)	214, 406
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	2 cut(s)	534, 615
BseDI	CCNNGG	4 cut(s)	137, 273, 286, 613
BseGI	GGATG	1 cut(s)	804
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	4 cut(s)	56, 274, 561, 750
BseMII	CTCAG	2 cut(s)	33, 588
BseNI	ACTGG	2 cut(s)	214, 406
BseRI	GAGGAG	2 cut(s)	72, 371
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	2 cut(s)	258, 298
BshNI	GGYRCC	2 cut(s)	544, 571
BsiHKAI	GWGCWC	2 cut(s)	330, 514
BslI	CCNNNNNNNGG	4 cut(s)	56, 274, 561, 750
Bsp1286I	GDGCHC	3 cut(s)	330, 514, 549
Bsp143I	GATC	3 cut(s)	189, 420, 678
Bsp19I	CCATGG	2 cut(s)	137, 273
BspACI	CCGC	3 cut(s)	244, 370, 555
BspCNI	CTCAG	3 cut(s)	4, 34, 589
BspLI	GGNNCC	3 cut(s)	48, 546, 573
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	2 cut(s)	544, 571
BsrI	ACTGG	2 cut(s)	214, 406
BssECI	CCNNGG	4 cut(s)	137, 273, 286, 613
BssMI	GATC	3 cut(s)	189, 420, 678
BssT1I	CCWWGG	3 cut(s)	137, 273, 286
Bst2UI	CCWGG	2 cut(s)	534, 615
Bst4CI	ACNGT	3 cut(s)	154, 201, 579
BstDEI	CTNAG	7 cut(s)	12, 42, 221, 337, 597, 710, 849
BstDSI	CCRYGG	2 cut(s)	137, 273
BstEII	GGTNACC	1 cut(s)	753
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	804
BstKTI	GATC	3 cut(s)	192, 423, 681
BstMBI	GATC	3 cut(s)	189, 420, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	2 cut(s)	534, 615
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	2 cut(s)	532, 613
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	258, 298
BstV2I	GAAGAC	3 cut(s)	111, 174, 496
BtgI	CCRYGG	2 cut(s)	137, 273
BtsCI	GGATG	1 cut(s)	804
BtsI	GCAGTG	2 cut(s)	669, 714
BtsIMutI	CAGTG	7 cut(s)	150, 197, 399, 575, 669, 714, 723
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	46, 290
CsiI	ACCWGGT	1 cut(s)	532
Csp6I	GTAC	3 cut(s)	388, 572, 663
CviAII	CATG	4 cut(s)	138, 193, 274, 550
CviQI	GTAC	3 cut(s)	388, 572, 663
DdeI	CTNAG	7 cut(s)	12, 42, 221, 337, 597, 710, 849
DpnI	GATC	3 cut(s)	191, 422, 680
DpnII	GATC	3 cut(s)	189, 420, 678
DraIII	CACNNNGTG	1 cut(s)	750
DrdI	GACNNNNNNGTC	1 cut(s)	288
DseDI	GACNNNNNNGTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	544
Eco130I	CCWWGG	3 cut(s)	137, 273, 286
Eco47I	GGWCC	2 cut(s)	46, 290
Eco91I	GGTNACC	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	2 cut(s)	532, 613
EcoT14I	CCWWGG	3 cut(s)	137, 273, 286
ErhI	CCWWGG	3 cut(s)	137, 273, 286
FaeI	CATG	4 cut(s)	141, 196, 277, 553
FatI	CATG	4 cut(s)	137, 192, 273, 549
FblI	GTMKAC	2 cut(s)	206, 735
Fnu4HI	GCNGC	2 cut(s)	247, 312
FokI	GGATG	1 cut(s)	811
Fsp4HI	GCNGC	2 cut(s)	247, 312
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	2 cut(s)	247, 312
Hin1II	CATG	4 cut(s)	141, 196, 277, 553
HinfI	GANTC	3 cut(s)	16, 394, 591
HphI	GGTGA	1 cut(s)	832
Hpy166II	GTNNAC	3 cut(s)	207, 293, 736
Hpy188I	TCNGA	2 cut(s)	13, 541
Hpy188III	TCNNGA	2 cut(s)	523, 638
Hpy8I	GTNNAC	3 cut(s)	207, 293, 736
HpyAV	CCTTC	2 cut(s)	82, 113
HpyCH4III	ACNGT	3 cut(s)	154, 201, 579
HpyCH4V	TGCA	2 cut(s)	150, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	7 cut(s)	12, 42, 221, 337, 597, 710, 849
Hsp92II	CATG	4 cut(s)	141, 196, 277, 553
KpnI	GGTACC	1 cut(s)	575
Kzo9I	GATC	3 cut(s)	189, 420, 678
Lsp1109I	GCAGC	2 cut(s)	258, 298
LweI	GCATC	1 cut(s)	222
MabI	ACCWGGT	1 cut(s)	532
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	4 cut(s)	440, 721, 753, 830
MalI	GATC	3 cut(s)	191, 422, 680
MboI	GATC	3 cut(s)	189, 420, 678
MboII	GAAGA	6 cut(s)	113, 116, 170, 179, 208, 501
MhlI	GDGCHC	3 cut(s)	330, 514, 549
MluCI	AATT	8 cut(s)	96, 113, 183, 363, 465, 641, 696, 823
MmeI	TCCRAC	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	664
MseI	TTAA	2 cut(s)	186, 413
MslI	CAYNNNNRTG	1 cut(s)	674
MspR9I	CCNGG	2 cut(s)	534, 615
MvaI	CCWGG	2 cut(s)	534, 615
MwoI	GCNNNNNNNGC	1 cut(s)	243
NcoI	CCATGG	2 cut(s)	137, 273
NdeII	GATC	3 cut(s)	189, 420, 678
NlaIII	CATG	4 cut(s)	141, 196, 277, 553
NlaIV	GGNNCC	3 cut(s)	48, 546, 573
NmuCI	GTSAC	2 cut(s)	440, 721
PdmI	GAANNNNTTC	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	16, 394, 591
PflMI	CCANNNNNTGG	1 cut(s)	750
PkrI	GCNGC	2 cut(s)	248, 313
PpuMI	RGGWCCY	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	532, 613
PspEI	GGTNACC	1 cut(s)	753
PspGI	CCWGG	2 cut(s)	532, 613
PspN4I	GGNNCC	3 cut(s)	48, 546, 573
PspPI	GGNCC	2 cut(s)	46, 290
PspPPI	RGGWCCY	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	725
RsaI	GTAC	3 cut(s)	389, 573, 664
RsaNI	GTAC	3 cut(s)	388, 572, 663
RseI	CAYNNNNRTG	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	186, 413
SatI	GCNGC	2 cut(s)	247, 312
Sau3AI	GATC	3 cut(s)	189, 420, 678
Sau96I	GGNCC	2 cut(s)	46, 290
ScaI	AGTACT	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	534, 615
SduI	GDGCHC	3 cut(s)	330, 514, 549
SetI	ASST	8 cut(s)	28, 74, 174, 288, 336, 535, 546, 782
SexAI	ACCWGGT	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	2 cut(s)	46, 290
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	8 cut(s)	96, 113, 183, 363, 465, 641, 696, 823
SsiI	CCGC	3 cut(s)	244, 370, 555
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	532, 613
StyI	CCWWGG	3 cut(s)	137, 273, 286
TaaI	ACNGT	3 cut(s)	154, 201, 579
TaqI	TCGA	1 cut(s)	483
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	8 cut(s)	96, 113, 183, 363, 465, 641, 696, 823
TatI	WGTACW	2 cut(s)	387, 662
TfiI	GAWTC	3 cut(s)	16, 394, 591
Tru1I	TTAA	2 cut(s)	186, 413
Tru9I	TTAA	2 cut(s)	186, 413
TscAI	CASTG	7 cut(s)	157, 204, 406, 582, 676, 721, 730
TseFI	GTSAC	2 cut(s)	440, 721
TseI	GCWGC	2 cut(s)	246, 311
Tsp45I	GTSAC	2 cut(s)	440, 721
TspDTI	ATGAA	5 cut(s)	306, 364, 596, 615, 826
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	7 cut(s)	157, 204, 406, 582, 676, 721, 730
Van91I	CCANNNNNTGG	1 cut(s)	750
VpaK11BI	GGWCC	2 cut(s)	46, 290
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	641, 823
XmiI	GTMKAC	2 cut(s)	206, 735
XmnI	GAANNNNTTC	1 cut(s)	664
XspI	CTAG	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.