Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

12767681 .. 12769859

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTCAGTGTGAGAGGGAGCTGTAGAGAAAGAAAGAGAGAATGGAAGTTGAAGGGAAGCTCTCTCCCCAGTCCACATCCAAAGAAGGAGAAGAAGTTCATAGGGTTTGCGATGATCATGAAGCAAGGACCAAAATATCGAGTTTCGAGGAAATATCGATGGTCCCGGAAAAGGAAATTTCGACGGAAATATCGAGGATATATCGATTTTGCAAACAACAAAGTCACTTTCTTGAACCTTCATCATCAGGGTATGATCATGTTGACCCTAATAGCAACTATCCACTCATTGACACCCTCACCATGTTCAATTGGCTCACTTATTACATGTCAAGCTCCATCAAAGTTTCAATACTCAGTCCTATATGCAGCATTATCACTAGCTTCTCTAGGACTTGGAGGCACTCGCTTCACAATTGCAACCATGGGAGCAGACCAATTCAATAATCCAAACGATCAAGGGGTTTTCTTCAATTGGTATTTTCTGGCTTTGTATGTGGCCAATGTCTTCAGCTTCACAGCCATCATTTATATTCAGGACAACGTGGGATGGGGATTAGGGTTCGGAATATGTTGCATTGCAAATGGTATTGGATTGGGGGTGTTTTTGTTGGGGAAACGACTTTATAAGCAAGTTAAACCAAAGGGTAGCCCATTCTTAAGCGTAGCAAGAGTACTGGTTGCAGCAATTCGGAAGAGGAAGATTTCATCAGAAGCTTCTAGAGAGAATGATTATTATTATGGAGCAGGTGTTTTGGCCGACAGTGCTCCACCAACTAAAAGTTTCAGGTATTTATTAATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

268

Amino Acids

30.23

Weight (kDa)

10.29

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	83 - 238	1.5e-28	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	737
AcoI	YGGCCR	2 cut(s)	498, 756
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflII	CTTAAG	1 cut(s)	658
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	6 cut(s)	52, 235, 309, 350, 442, 472
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	6 cut(s)	21, 60, 335, 383, 513, 716
AluI	AGCT	6 cut(s)	21, 60, 335, 383, 513, 716
Alw21I	GWGCWC	1 cut(s)	769
AoxI	GGCC	2 cut(s)	498, 756
ApeKI	GCWGC	2 cut(s)	368, 683
ApoI	RAATTY	1 cut(s)	176
AseI	ATTAAT	2 cut(s)	797, 801
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	128, 162
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	128, 162
BalI	TGGCCA	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	2 cut(s)	380, 695
BccI	CCATC	4 cut(s)	153, 346, 530, 543
BclI	TGATCA	2 cut(s)	114, 255
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	3 cut(s)	380, 389, 720
BfmI	CTRYAG	1 cut(s)	22
BfrI	CTTAAG	1 cut(s)	658
BfuAI	ACCTGC	1 cut(s)	737
BisI	GCNGC	2 cut(s)	369, 684
BlsI	GCNGC	2 cut(s)	370, 685
BmcAI	AGTACT	1 cut(s)	675
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	128, 162
BmgT120I	GGNCC	2 cut(s)	128, 162
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	2 cut(s)	157, 204
BsaJI	CCNNGG	1 cut(s)	423
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 735, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	69, 681
Bse3DI	GCAATG	1 cut(s)	576
BseCI	ATCGAT	2 cut(s)	157, 204
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	2 cut(s)	76, 554
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	69, 681
BseXI	GCAGC	2 cut(s)	380, 695
BshFI	GGCC	2 cut(s)	500, 758
BshVI	ATCGAT	2 cut(s)	157, 204
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	500, 758
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp143I	GATC	3 cut(s)	114, 255, 454
Bsp19I	CCATGG	1 cut(s)	423
BspANI	GGCC	2 cut(s)	500, 758
BspCNI	CTCAG	1 cut(s)	368
BspDI	ATCGAT	2 cut(s)	157, 204
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	69, 681
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	3 cut(s)	114, 255, 454
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	1 cut(s)	689
BstAFI	CTTAAG	1 cut(s)	658
BstDEI	CTNAG	1 cut(s)	355
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	76, 554
BstKTI	GATC	3 cut(s)	117, 258, 457
BstMBI	GATC	3 cut(s)	114, 255, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	380, 695
BstV2I	GAAGAC	1 cut(s)	499
Bsu15I	ATCGAT	2 cut(s)	157, 204
BsuRI	GGCC	2 cut(s)	500, 758
BsuTUI	ATCGAT	2 cut(s)	157, 204
BtgI	CCRYGG	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	76, 554
BtsIMutI	CAGTG	2 cut(s)	13, 769
BveI	ACCTGC	1 cut(s)	737
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	128, 162
ClaI	ATCGAT	2 cut(s)	157, 204
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	5 cut(s)	118, 259, 303, 327, 424
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	3 cut(s)	116, 257, 456
DpnII	GATC	3 cut(s)	114, 255, 454
EaeI	YGGCCR	2 cut(s)	498, 756
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	128, 162
Eco57I	CTGAAG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	5 cut(s)	121, 262, 306, 330, 427
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	5 cut(s)	117, 258, 302, 326, 423
FbaI	TGATCA	2 cut(s)	114, 255
Fnu4HI	GCNGC	2 cut(s)	369, 684
FokI	GGATG	2 cut(s)	63, 561
Fsp4HI	GCNGC	2 cut(s)	369, 684
FspBI	CTAG	3 cut(s)	380, 389, 720
GluI	GCNGC	2 cut(s)	369, 684
HaeIII	GGCC	2 cut(s)	500, 758
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	5 cut(s)	121, 262, 306, 330, 427
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	714
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	74, 264
Hpy188I	TCNGA	3 cut(s)	566, 693, 712
Hpy188III	TCNNGA	4 cut(s)	118, 232, 536, 720
Hpy8I	GTNNAC	2 cut(s)	74, 264
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	3 cut(s)	46, 79, 248
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	6 cut(s)	212, 368, 419, 576, 581, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	121, 262, 306, 330, 427
Ksp22I	TGATCA	2 cut(s)	114, 255
Kzo9I	GATC	3 cut(s)	114, 255, 454
LmnI	GCTCC	5 cut(s)	18, 340, 428, 743, 772
LpnPI	CCDG	8 cut(s)	82, 179, 233, 470, 521, 662, 732, 772
Lsp1109I	GCAGC	2 cut(s)	380, 695
MaeI	CTAG	3 cut(s)	380, 389, 720
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	116, 257, 456
MboI	GATC	3 cut(s)	114, 255, 454
MboII	GAAGA	5 cut(s)	103, 460, 499, 706, 712
MfeI	CAATTG	3 cut(s)	309, 414, 472
MhlI	GDGCHC	1 cut(s)	769
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	8 cut(s)	176, 309, 414, 437, 472, 687, 798, 802
MluNI	TGGCCA	1 cut(s)	500
MnlI	CCTC	6 cut(s)	8, 141, 188, 307, 392, 690
Mox20I	TGGCCA	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	4 cut(s)	636, 659, 797, 801
Msp20I	TGGCCA	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	658
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	3 cut(s)	309, 414, 472
MwoI	GCNNNNNNNGC	1 cut(s)	764
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	3 cut(s)	114, 255, 454
NlaIII	CATG	5 cut(s)	121, 262, 306, 330, 427
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	330
PacI	TTAATTAA	1 cut(s)	801
PagI	TCATGA	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	737
PciI	ACATGT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	370, 685
PscI	ACATGT	1 cut(s)	326
PshBI	ATTAAT	2 cut(s)	797, 801
PsiI	TTATAA	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	128, 162
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SaqAI	TTAA	4 cut(s)	636, 659, 797, 801
SatI	GCNGC	2 cut(s)	369, 684
Sau3AI	GATC	3 cut(s)	114, 255, 454
Sau96I	GGNCC	2 cut(s)	128, 162
ScaI	AGTACT	1 cut(s)	675
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	2 cut(s)	128, 162
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	8 cut(s)	176, 309, 414, 437, 472, 687, 798, 802
SspMI	CTAG	3 cut(s)	380, 389, 720
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	764
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	6 cut(s)	139, 146, 157, 181, 193, 204
TasI	AATT	8 cut(s)	176, 309, 414, 437, 472, 687, 798, 802
TatI	WGTACW	1 cut(s)	673
Tru1I	TTAA	4 cut(s)	636, 659, 797, 801
Tru9I	TTAA	4 cut(s)	636, 659, 797, 801
TscAI	CASTG	2 cut(s)	13, 769
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	368, 683
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	88, 134, 230, 696
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	13, 769
Vha464I	CTTAAG	1 cut(s)	658
VpaK11BI	GGWCC	2 cut(s)	128, 162
VspI	ATTAAT	2 cut(s)	797, 801
XapI	RAATTY	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	719
XceI	RCATGY	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	380, 389, 720
ZrmI	AGTACT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.