Rorug05G0340200

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
41423471 .. 41426838
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0340200.1

Sequence Viewer

Length: 504 bp
ATGGCGAGGTCGTTGGTTGTAATTCATCTTTTCAATCTTCATATGCAGGCCATCTATGATTTGATTTGCTTTTTTGAAGATGTTACGTATGTGAAATGGCTGAATATTCCAAGTGAGGTGGTGGGTGCTTGTTGTCTCGATTTACGTTACAAGCTCTCAAGTATTGGGAGTGAAAACTTGGTGTACAATGCAACTTTGGGAGTAGAGAAGAAAAACTCTGGACATCAAGTAGCAGCTGTTTCATTGGTTACTGAAAGCTGTGCAGCTGTAGAGCCATTTCTTGCTAGAAATCCATCTCGAATCCTCCCTGCAATGCCTCAAGATCTTGTTAGAATTAATGGAAACCTTTTGGTATCAATATTAGATGTGTTTGTGGATGCGTTGATTGGTAGGTTTTTGCTAGATGCAATATCCAAAATCTACTCTAAGTTGTCTAGTGTCTTTTCTAGTGTTCATACAACAGGTTTGTTAGCTCTTACTCTTGTCCAAAATTTCTTCAGATGA

Protein Analysis

167

Amino Acids

18.45

Weight (kDa)

6.89

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 481
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 2 cut(s) 34, 77
AluBI AGCT 5 cut(s) 154, 236, 258, 266, 473
AluI AGCT 5 cut(s) 154, 236, 258, 266, 473
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 233, 263
ApoI RAATTY 1 cut(s) 490
AseI ATTAAT 1 cut(s) 336
BbvI GCAGC 2 cut(s) 245, 275
BccI CCATC 2 cut(s) 59, 301
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 4 cut(s) 285, 401, 435, 447
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 322
BisI GCNGC 2 cut(s) 234, 264
BlsI GCNGC 2 cut(s) 235, 265
BmsI GCATC 2 cut(s) 367, 394
BpuEI CTTGAG 2 cut(s) 142, 303
BsaAI YACGTR 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 318
BseGI GGATG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 318
BseXI GCAGC 2 cut(s) 245, 275
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 322
BspANI GGCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 183
BssMI GATC 1 cut(s) 322
BstAUI TGTACA 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 267
BstSNI TACGTA 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 245, 275
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviJI RGCY 8 cut(s) 50, 100, 154, 236, 258, 266, 274, 473
CviKI_1 RGCY 8 cut(s) 50, 100, 154, 236, 258, 266, 274, 473
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 426
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eco105I TACGTA 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 481
FaiI YATR 5 cut(s) 42, 44, 57, 90, 456
FauNDI CATATG 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 234, 264
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 234, 264
FspBI CTAG 4 cut(s) 285, 401, 435, 447
GluI GCNGC 2 cut(s) 234, 264
HaeIII GGCC 1 cut(s) 50
HinfI GANTC 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 4 cut(s) 137, 219, 297, 320
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4IV ACGT 2 cut(s) 86, 145
HpyCH4V TGCA 5 cut(s) 46, 191, 263, 311, 407
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 2 cut(s) 86, 145
Kzo9I GATC 1 cut(s) 322
LpnPI CCDG 4 cut(s) 32, 204, 321, 447
Lsp1109I GCAGC 2 cut(s) 245, 275
LweI GCATC 2 cut(s) 367, 394
MaeI CTAG 4 cut(s) 285, 401, 435, 447
MaeII ACGT 2 cut(s) 86, 145
MaeIII GTNAC 3 cut(s) 82, 146, 247
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 4 cut(s) 29, 89, 220, 487
MflI RGATCY 1 cut(s) 322
MluCI AATT 3 cut(s) 21, 333, 490
MnlI CCTC 3 cut(s) 109, 314, 327
MseI TTAA 1 cut(s) 336
MspA1I CMGCKG 2 cut(s) 236, 266
NdeI CATATG 1 cut(s) 42
NdeII GATC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 2 cut(s) 235, 265
Ppu21I YACGTR 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 336
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 2 cut(s) 236, 266
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 234, 264
Sau3AI GATC 1 cut(s) 322
SfaNI GCATC 2 cut(s) 367, 394
SfcI CTRYAG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 157, 318
SmoI CTYRAG 2 cut(s) 157, 318
SnaBI TACGTA 1 cut(s) 87
Sse9I AATT 3 cut(s) 21, 333, 490
SspI AATATT 2 cut(s) 106, 360
SspMI CTAG 4 cut(s) 285, 401, 435, 447
TaiI ACGT 2 cut(s) 89, 148
TaqI TCGA 2 cut(s) 138, 298
TasI AATT 3 cut(s) 21, 333, 490
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 2 cut(s) 233, 263
TspDTI ATGAA 4 cut(s) 14, 29, 231, 443
VspI ATTAAT 1 cut(s) 336
XapI RAATTY 1 cut(s) 490
XspI CTAG 4 cut(s) 285, 401, 435, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.