Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035434.1

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

1915 .. 2610

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035434.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgccactgtggtctacgggcatcttcctaagcacaccaataggcattttaagcagcctcactatactccaagccctaaccatggatagacaccttggtccacacttcaaaatccctgctgcttcattcctagtgttcgccctcttagccacagccatctccatctttataattgaccgattcatactcctcaagtacaagaatctcactggacgaactttaacaccgatccagcgaatagggatcggtcacatcatcaacattatttgtctaattggggctgccctaatcgaaagaagacgacttggagtggcaagatcacatagccttatgaaacaacctggttcagaggtgcccatgttctccttttggcttgtggcaccgttatctgttatgggaatcggtgaggcaattcatttccctggacaagtttcattttgctatcaagaatttccaaaatcattgagaagtacatccactgcaatgatctcattattacttggaatcaggtattatcttagcactgcagtcactgatttggtagacaagactacgaattggttgccagatgatataaatcaagggcggttggataatgtcttttggatgttggtagtgattggggtggtgaattttggttactacataacttgtgctaagttttttgtgtcccaaaaacaaaatgttgggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

231

Amino Acids

25.71

Weight (kDa)

9.67

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	96
AccB1I	GGYRCC	2 cut(s)	352, 379
AccI	GTMKAC	2 cut(s)	14, 543
AciI	CCGC	1 cut(s)	586
AclWI	GGATC	2 cut(s)	223, 251
AcsI	RAATTY	2 cut(s)	449, 631
AfaI	GTAC	2 cut(s)	197, 472
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	340, 421
AlwI	GGATC	2 cut(s)	223, 251
AlwNI	CAGNNNCTG	1 cut(s)	533
ApeKI	GCWGC	3 cut(s)	54, 119, 281
ApoI	RAATTY	2 cut(s)	449, 631
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	416, 640
AvaII	GGWCC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	2 cut(s)	352, 379
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	66, 106, 268
BccI	CCATC	2 cut(s)	164, 170
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	2 cut(s)	342, 423
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	3 cut(s)	55, 120, 282
BlsI	GCNGC	3 cut(s)	56, 121, 283
Bme1390I	CCNGG	2 cut(s)	342, 423
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	354, 381
BmrFI	CCNGG	2 cut(s)	342, 423
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	81, 94, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	342, 423
BseDI	CCNNGG	3 cut(s)	81, 94, 421
BseGI	GGATG	2 cut(s)	473, 612
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	489
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	66, 106, 268
BshNI	GGYRCC	2 cut(s)	352, 379
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	228, 243, 317, 486
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	354, 381
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	2 cut(s)	223, 251
BspT107I	GGYRCC	2 cut(s)	352, 379
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	81, 94, 421
BssMI	GATC	4 cut(s)	228, 243, 317, 486
BssT1I	CCWWGG	2 cut(s)	81, 94
Bst2UI	CCWGG	2 cut(s)	342, 423
Bst4CI	ACNGT	2 cut(s)	9, 384
BstDEI	CTNAG	4 cut(s)	29, 145, 518, 657
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	473, 612
BstKTI	GATC	4 cut(s)	231, 246, 320, 489
BstMBI	GATC	4 cut(s)	228, 243, 317, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 146
BstNI	CCWGG	2 cut(s)	342, 423
BstSCI	CCNGG	2 cut(s)	340, 421
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	66, 106, 268
BstV2I	GAAGAC	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	473, 612
BtsI	GCAGTG	2 cut(s)	477, 522
BtsIMutI	CAGTG	5 cut(s)	5, 207, 477, 522, 531
CaiI	CAGNNNCTG	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	98
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	196, 471
CviAII	CATG	2 cut(s)	82, 358
CviJI	RGCY	7 cut(s)	57, 74, 149, 155, 281, 327, 373
CviKI_1	RGCY	7 cut(s)	57, 74, 149, 155, 281, 327, 373
CviQI	GTAC	2 cut(s)	196, 471
DdeI	CTNAG	4 cut(s)	29, 145, 518, 657
DpnI	GATC	4 cut(s)	230, 245, 319, 488
DpnII	GATC	4 cut(s)	228, 243, 317, 486
DrdI	GACNNNNNNGTC	1 cut(s)	96
DseDI	GACNNNNNNGTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	81, 94
Eco47I	GGWCC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	340, 421
EcoT14I	CCWWGG	2 cut(s)	81, 94
ErhI	CCWWGG	2 cut(s)	81, 94
FaeI	CATG	2 cut(s)	85, 361
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	2 cut(s)	81, 357
FblI	GTMKAC	2 cut(s)	14, 543
Fnu4HI	GCNGC	3 cut(s)	55, 120, 282
FokI	GGATG	2 cut(s)	460, 619
Fsp4HI	GCNGC	3 cut(s)	55, 120, 282
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	3 cut(s)	55, 120, 282
Hin1II	CATG	2 cut(s)	85, 361
HinfI	GANTC	4 cut(s)	180, 202, 399, 504
HphI	GGTGA	2 cut(s)	416, 640
Hpy166II	GTNNAC	3 cut(s)	15, 101, 544
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	3 cut(s)	15, 101, 544
HpyCH4III	ACNGT	2 cut(s)	9, 384
HpyCH4V	TGCA	2 cut(s)	482, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 146
HpyF3I	CTNAG	4 cut(s)	29, 145, 518, 657
Hsp92II	CATG	2 cut(s)	85, 361
Kzo9I	GATC	4 cut(s)	228, 243, 317, 486
LpnPI	CCDG	9 cut(s)	129, 195, 245, 327, 354, 408, 435, 493, 579
Lsp1109I	GCAGC	3 cut(s)	66, 106, 268
LweI	GCATC	1 cut(s)	30
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	248, 529, 638
MalI	GATC	4 cut(s)	230, 245, 319, 488
MboI	GATC	4 cut(s)	228, 243, 317, 486
MboII	GAAGA	2 cut(s)	16, 309
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	6 cut(s)	171, 273, 411, 449, 556, 631
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	5 cut(s)	68, 152, 200, 343, 400
MseI	TTAA	2 cut(s)	50, 221
MslI	CAYNNNNRTG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	342, 423
MvaI	CCWGG	2 cut(s)	342, 423
MwoI	GCNNNNNNNGC	2 cut(s)	51, 146
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	228, 243, 317, 486
NlaIII	CATG	2 cut(s)	85, 361
NlaIV	GGNNCC	2 cut(s)	354, 381
NmuCI	GTSAC	2 cut(s)	248, 529
PfeI	GAWTC	4 cut(s)	180, 202, 399, 504
PkrI	GCNGC	3 cut(s)	56, 121, 283
PsiI	TTATAA	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	340, 421
PspGI	CCWGG	2 cut(s)	340, 421
PspN4I	GGNNCC	2 cut(s)	354, 381
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	197, 472
RsaNI	GTAC	2 cut(s)	196, 471
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	50, 221
SatI	GCNGC	3 cut(s)	55, 120, 282
Sau3AI	GATC	4 cut(s)	228, 243, 317, 486
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	342, 423
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	4 cut(s)	96, 343, 354, 512
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	6 cut(s)	171, 273, 411, 449, 556, 631
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	340, 421
StyI	CCWWGG	2 cut(s)	81, 94
TaaI	ACNGT	2 cut(s)	9, 384
TaqI	TCGA	1 cut(s)	291
TaqII	GACCGA	2 cut(s)	192, 236
TasI	AATT	6 cut(s)	171, 273, 411, 449, 556, 631
TatI	WGTACW	2 cut(s)	195, 470
TfiI	GAWTC	4 cut(s)	180, 202, 399, 504
Tru1I	TTAA	2 cut(s)	50, 221
Tru9I	TTAA	2 cut(s)	50, 221
TscAI	CASTG	5 cut(s)	12, 214, 484, 529, 538
TseFI	GTSAC	2 cut(s)	248, 529
TseI	GCWGC	3 cut(s)	54, 119, 281
Tsp45I	GTSAC	2 cut(s)	248, 529
TspDTI	ATGAA	5 cut(s)	114, 172, 347, 404, 423
TspRI	CASTG	5 cut(s)	12, 214, 484, 529, 538
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	2 cut(s)	449, 631
XmiI	GTMKAC	2 cut(s)	14, 543
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.