Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

11240400 .. 11241732

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1122000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGCATCACTCTCTGTGGACAGAGAAGGACAAATGGTGGATGATGGTGGTAAACGCGGTGGTTGGATCATCTTTTTATTCATGATAGGAGCTTTAATGTGCTTGACACTTGCTGCTGGAGGATGGCAAGCAAATCTGATTCTGTGTCAAATGTTGTCAATGGTTGCACTAGGATTGGTCCTATTCACTTTGACTGCAACTCTTGATTCCTTGAGGCCCTCTTCATGTGAGAATGGATCTAGCTTGTGCAAAACACCATCAAAAATTCAGTTTGCGGTCCTATATGCTAGTATAACTCTGGCATCAATTGGACTCAGAGGCACTCGCTTTACTATAGCAACAATGGGAGCAAACCAATTTGACAAGCCTAAAAATCAAGGGATTTTCTTTAACTGGTTTTTCTTTGCCATGTATACAGCAACTGTTGTAAGTTCTACTGTCGTTTGTGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

153

Amino Acids

16.44

Weight (kDa)

8.33

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	52 - 148	6.2e-08	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	416
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	60, 278
AclWI	GGATC	2 cut(s)	77, 247
AcsI	RAATTY	1 cut(s)	267
AluBI	AGCT	2 cut(s)	95, 246
AluI	AGCT	2 cut(s)	95, 246
AlwI	GGATC	2 cut(s)	77, 247
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	181, 219, 280
AvaII	GGWCC	2 cut(s)	181, 280
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	3 cut(s)	41, 120, 268
BfaI	CTAG	3 cut(s)	173, 243, 291
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	181, 280
BmgT120I	GGNCC	3 cut(s)	181, 219, 280
BmsI	GCATC	2 cut(s)	17, 314
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	401
BseGI	GGATG	3 cut(s)	10, 49, 131
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	69, 239
BspACI	CCGC	2 cut(s)	60, 278
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	84
BspPI	GGATC	2 cut(s)	77, 247
BsrI	ACTGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	69, 239
BssNAI	GTATAC	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	427, 442
Bst6I	CTCTTC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	10, 49, 131
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	72, 242
BstMBI	GATC	2 cut(s)	69, 239
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	10, 49, 131
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	181, 219, 280
CviAII	CATG	3 cut(s)	85, 228, 412
CviJI	RGCY	4 cut(s)	95, 220, 246, 370
CviKI_1	RGCY	4 cut(s)	95, 220, 246, 370
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	2 cut(s)	71, 241
DpnII	GATC	2 cut(s)	69, 239
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	181, 280
EcoO109I	RGGNCCY	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	3 cut(s)	88, 231, 415
FaiI	YATR	9 cut(s)	86, 229, 286, 288, 296, 338, 413, 417, 454
FatI	CATG	3 cut(s)	84, 227, 411
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	3 cut(s)	17, 56, 138
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	3 cut(s)	173, 243, 291
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	88, 231, 415
HinfI	GANTC	3 cut(s)	142, 209, 315
Hpy166II	GTNNAC	3 cut(s)	22, 56, 417
Hpy188I	TCNGA	2 cut(s)	141, 320
Hpy188III	TCNNGA	2 cut(s)	85, 206
Hpy8I	GTNNAC	3 cut(s)	22, 56, 417
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	427, 442
HpyCH4V	TGCA	4 cut(s)	8, 170, 200, 252
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	88, 231, 415
Kzo9I	GATC	2 cut(s)	69, 239
LmnI	GCTCC	2 cut(s)	92, 350
LpnPI	CCDG	3 cut(s)	105, 287, 382
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	17, 314
MaeI	CTAG	3 cut(s)	173, 243, 291
MalI	GATC	2 cut(s)	71, 241
MboI	GATC	2 cut(s)	69, 239
MboII	GAAGA	1 cut(s)	216
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	239
MluCI	AATT	3 cut(s)	267, 309, 359
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	116, 210, 232, 314
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	2 cut(s)	98, 393
MunI	CAATTG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	60
NdeII	GATC	2 cut(s)	69, 239
NlaIII	CATG	3 cut(s)	88, 231, 415
NsiI	ATGCAT	1 cut(s)	10
PagI	TCATGA	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	142, 209
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PspPI	GGNCC	3 cut(s)	181, 219, 280
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	98, 393
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	69, 239
Sau96I	GGNCC	3 cut(s)	181, 219, 280
SchI	GAGTC	1 cut(s)	309
SetI	ASST	2 cut(s)	97, 248
SfaNI	GCATC	2 cut(s)	17, 314
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	181, 280
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	3 cut(s)	267, 309, 359
SsiI	CCGC	2 cut(s)	60, 278
SspMI	CTAG	3 cut(s)	173, 243, 291
TaaI	ACNGT	2 cut(s)	427, 442
TasI	AATT	3 cut(s)	267, 309, 359
TfiI	GAWTC	2 cut(s)	142, 209
Tru1I	TTAA	2 cut(s)	98, 393
Tru9I	TTAA	2 cut(s)	98, 393
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	73, 216
VpaK11BI	GGWCC	2 cut(s)	181, 280
XapI	RAATTY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	416
XspI	CTAG	3 cut(s)	173, 243, 291
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.