Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

29291583 .. 29294170

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCAATGTTTTAAAAGGCTAAGGCGTAACCGAGGCAATGGCACGAGAGCCTCACCAACCCTCACCAAGGCACTTGCCTTGAGGCGCGCACGCCTTTCGCGCCTTATGTGCGCCTTTTGCGCTTTTCAAGCCTTGTTCTGCGTTTTTTGCGCCTCTGCGCCTAACCCATCAAGGCTGACTCAGTTGCAGCACCGCCTCGCGCTTTTTGAGCCTCAAGGCGCGCCCGAGGCGCGGGCTACATTAGGCTTGACACTTGCGGTGGGAGGATGGCTCTCAAATTTGATAGTATTTCTGATTCAAGAATTCAATGAAAAGAGCATCGATGCTGCTCAGATTGCAAACGTGGTTGACGGTTCTTCTAGCTTTTTCCCAGTCCTTGGAGCTATCATAGCCGACTCTTTCTTCGGTCCTTTCCTGGTCATCTCCATATCTTCCTGCATTTCCTTGCTGCCTCAACCTTGTGTTATGGGATCAGAAATATGCCAATCAACCTCATTTTGGCAATACACAATCTTGTATACGGGTGTAACTTTGGCATCACTTGGCATTGGAGGTACACGTTTTACCCTAGCAACATTCGGAGCAAATCAATTCGATAATCCTAAACATCAAGCAACTTTCTTTAACTGGTTCTTCATTAGCATATACTCTACCTCAACGTTGGCTATAACCGTCATCGTGTACATGGAGGACAATTTGGGTTTTAAATGGGGTTTTGGCCTAGCTGTCGCTGCCAACGTTATTGGCATGGTCATTTTCTTATCTGGAACCCGATACTACCGTCATAGTAAGCCTCAGGGGAGTCCATTTGCCGGTCTAACTCGTGTCGTTGTTGCTACTACTCGAAAATGGAATCTCCAGCTCTCATCTGAAAGCAAAGATTATTGTTACTATGGGGAAGAGGGAGAGACAAACGGGGTCGCTACAACACCTAGCGGGAGCTTCAGGTATAGGATGCTCCAATTGGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

325

Amino Acids

35.58

Weight (kDa)

9.39

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	140 - 291	8e-25	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	5 cut(s)	87, 100, 200, 221, 232
AciI	CCGC	4 cut(s)	193, 232, 257, 936
AclI	AACGTT	2 cut(s)	659, 738
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	277, 302
AcuI	CTGAAG	1 cut(s)	928
AfaI	GTAC	2 cut(s)	556, 683
AfiI	CCNNNNNNNGG	5 cut(s)	67, 231, 377, 498, 812
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	128, 299, 307
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	5 cut(s)	363, 383, 725, 862, 942
AluI	AGCT	5 cut(s)	363, 383, 725, 862, 942
Alw26I	GTCTC	1 cut(s)	902
AlwI	GGATC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	718
ApeKI	GCWGC	4 cut(s)	187, 326, 448, 731
ApoI	RAATTY	2 cut(s)	277, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AscI	GGCGCGCC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	45, 55
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	407
AxyI	CCTNAGG	1 cut(s)	795
BaeI	ACNNNNGTAYC	2 cut(s)	766, 799
BauI	CACGAG	2 cut(s)	43, 822
BbvI	GCAGC	4 cut(s)	199, 313, 435, 718
BccI	CCATC	2 cut(s)	175, 261
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	902
BfaI	CTAG	4 cut(s)	360, 569, 722, 933
BisI	GCNGC	4 cut(s)	188, 327, 449, 732
BlsI	GCNGC	4 cut(s)	189, 328, 450, 733
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	407
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	769
BmrFI	CCNGG	1 cut(s)	416
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	4 cut(s)	313, 327, 545, 945
BmuI	ACTGGG	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	100, 198
Bsa29I	ATCGAT	1 cut(s)	321
BsaJI	CCNNGG	4 cut(s)	31, 66, 225, 376
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 231, 377, 498, 812
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	2 cut(s)	371, 632
Bse21I	CCTNAGG	1 cut(s)	795
Bse3DI	GCAATG	2 cut(s)	11, 43
BseBI	CCWGG	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	4 cut(s)	31, 66, 225, 376
BseGI	GGATG	2 cut(s)	272, 960
BseLI	CCNNNNNNNGG	5 cut(s)	67, 231, 377, 498, 812
BseMI	GCAATG	2 cut(s)	11, 43
BseMII	CTCAG	3 cut(s)	194, 344, 809
BseNI	ACTGG	2 cut(s)	371, 632
BsePI	GCGCGC	2 cut(s)	85, 219
BseXI	GCAGC	4 cut(s)	199, 313, 435, 718
Bsh1236I	CGCG	5 cut(s)	87, 100, 200, 221, 232
BshFI	GGCC	1 cut(s)	720
BshVI	ATCGAT	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	813
BslI	CCNNNNNNNGG	5 cut(s)	67, 231, 377, 498, 812
BsmAI	GTCTC	1 cut(s)	902
BsnI	GGCC	1 cut(s)	720
BsoBI	CYCGRG	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	470
BspACI	CCGC	4 cut(s)	193, 232, 257, 936
BspANI	GGCC	1 cut(s)	720
BspCNI	CTCAG	3 cut(s)	193, 343, 808
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	5 cut(s)	87, 100, 200, 221, 232
BspLI	GGNNCC	1 cut(s)	769
BspPI	GGATC	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	11, 43
BsrFI	RCCGGY	1 cut(s)	812
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	371, 632
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	4 cut(s)	31, 66, 225, 376
BssHII	GCGCGC	2 cut(s)	85, 219
BssMI	GATC	1 cut(s)	470
BssNAI	GTATAC	1 cut(s)	519
BssSI	CACGAG	2 cut(s)	43, 822
BssT1I	CCWWGG	2 cut(s)	66, 376
Bst1107I	GTATAC	1 cut(s)	519
Bst2BI	CACGAG	2 cut(s)	43, 822
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	3 cut(s)	353, 673, 782
Bst6I	CTCTTC	1 cut(s)	894
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	4 cut(s)	87, 91, 221, 234
BstDEI	CTNAG	4 cut(s)	20, 180, 330, 795
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	272, 960
BstFNI	CGCG	5 cut(s)	87, 100, 200, 221, 232
BstKTI	GATC	1 cut(s)	473
BstMAI	GTCTC	1 cut(s)	902
BstMBI	GATC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	414
BstUI	CGCG	5 cut(s)	87, 100, 200, 221, 232
BstV1I	GCAGC	4 cut(s)	199, 313, 435, 718
BstZ17I	GTATAC	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	795
BsuRI	GGCC	1 cut(s)	720
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	272, 960
Cac8I	GCNNGC	4 cut(s)	87, 91, 221, 234
Cfr10I	RCCGGY	1 cut(s)	812
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	555, 682
CviAII	CATG	2 cut(s)	685, 748
CviQI	GTAC	2 cut(s)	555, 682
DdeI	CTNAG	4 cut(s)	20, 180, 330, 795
DpnI	GATC	1 cut(s)	472
DpnII	GATC	1 cut(s)	470
DraI	TTTAAA	2 cut(s)	13, 706
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	2 cut(s)	66, 376
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	928
Eco81I	CCTNAGG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	66, 376
ErhI	CCWWGG	2 cut(s)	66, 376
FaeI	CATG	2 cut(s)	688, 751
FatI	CATG	2 cut(s)	684, 747
FauI	CCCGC	2 cut(s)	225, 929
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	4 cut(s)	188, 327, 449, 732
FokI	GGATG	2 cut(s)	279, 967
Fsp4HI	GCNGC	4 cut(s)	188, 327, 449, 732
FspBI	CTAG	4 cut(s)	360, 569, 722, 933
GluI	GCNGC	4 cut(s)	188, 327, 449, 732
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	1 cut(s)	720
HapII	CCGG	1 cut(s)	813
Hin1II	CATG	2 cut(s)	688, 751
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	5 cut(s)	178, 295, 395, 802, 853
HpaII	CCGG	1 cut(s)	813
HphI	GGTGA	2 cut(s)	45, 55
Hpy166II	GTNNAC	4 cut(s)	349, 519, 557, 682
Hpy188I	TCNGA	5 cut(s)	294, 333, 475, 581, 871
Hpy188III	TCNNGA	2 cut(s)	299, 765
Hpy8I	GTNNAC	4 cut(s)	349, 519, 557, 682
HpyCH4III	ACNGT	3 cut(s)	353, 673, 782
HpyCH4IV	ACGT	4 cut(s)	342, 559, 659, 738
HpyCH4V	TGCA	4 cut(s)	4, 187, 338, 438
HpyF3I	CTNAG	4 cut(s)	20, 180, 330, 795
HpySE526I	ACGT	4 cut(s)	342, 559, 659, 738
Hsp92II	CATG	2 cut(s)	688, 751
Kzo9I	GATC	1 cut(s)	470
LmnI	GCTCC	4 cut(s)	380, 581, 939, 963
Lsp1109I	GCAGC	4 cut(s)	199, 313, 435, 718
LweI	GCATC	4 cut(s)	313, 327, 545, 945
MaeI	CTAG	4 cut(s)	360, 569, 722, 933
MaeII	ACGT	4 cut(s)	342, 559, 659, 738
MaeIII	GTNAC	3 cut(s)	26, 526, 887
MalI	GATC	1 cut(s)	472
MboI	GATC	1 cut(s)	470
MboII	GAAGA	5 cut(s)	348, 394, 423, 625, 911
MfeI	CAATTG	1 cut(s)	962
MluCI	AATT	5 cut(s)	277, 302, 590, 694, 962
MlyI	GAGTC	3 cut(s)	172, 389, 811
MseI	TTAA	3 cut(s)	12, 624, 705
MspI	CCGG	1 cut(s)	813
MspR9I	CCNGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	962
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	5 cut(s)	87, 100, 200, 221, 232
NdeII	GATC	1 cut(s)	470
NlaIII	CATG	2 cut(s)	688, 751
NlaIV	GGNNCC	1 cut(s)	769
PalAI	GGCGCGCC	1 cut(s)	219
PauI	GCGCGC	2 cut(s)	85, 219
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	295, 853
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	4 cut(s)	189, 328, 450, 733
PleI	GAGTC	3 cut(s)	172, 389, 810
PpsI	GAGTC	3 cut(s)	172, 389, 810
Psp1406I	AACGTT	2 cut(s)	659, 738
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	1 cut(s)	407
PteI	GCGCGC	2 cut(s)	85, 219
RsaI	GTAC	2 cut(s)	556, 683
RsaNI	GTAC	2 cut(s)	555, 682
SaqAI	TTAA	3 cut(s)	12, 624, 705
SatI	GCNGC	4 cut(s)	188, 327, 449, 732
Sau3AI	GATC	1 cut(s)	470
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	3 cut(s)	172, 389, 811
ScrFI	CCNGG	1 cut(s)	416
SfaNI	GCATC	4 cut(s)	313, 327, 545, 945
SgsI	GGCGCGCC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	79, 213
SmoI	CTYRAG	2 cut(s)	79, 213
Sse9I	AATT	5 cut(s)	277, 302, 590, 694, 962
SsiI	CCGC	4 cut(s)	193, 232, 257, 936
SspMI	CTAG	4 cut(s)	360, 569, 722, 933
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	66, 376
TaaI	ACNGT	3 cut(s)	353, 673, 782
TaiI	ACGT	4 cut(s)	345, 562, 662, 741
TaqI	TCGA	3 cut(s)	321, 594, 844
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	5 cut(s)	277, 302, 590, 694, 962
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	2 cut(s)	295, 853
Tru1I	TTAA	3 cut(s)	12, 624, 705
Tru9I	TTAA	3 cut(s)	12, 624, 705
TseI	GCWGC	4 cut(s)	187, 326, 448, 731
TspDTI	ATGAA	2 cut(s)	324, 625
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	407
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	2 cut(s)	277, 302
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	4 cut(s)	360, 569, 722, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.