Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

67203901 .. 67218944

Gene Structure 15044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG414600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAGTTTCAGCACTGGTAGAGTCTAAAAGGCTTAAAATTTCCCAAGACCATCCTGGTGCAACTACTGTCCCCATGTTGGCATTGTGGCTCTTCCCACAATTGGTTTTGGTTGGCGTTGGAGAGGCATTTCATTTTCCAGGACAAGTTTCTTTGTATTACCAAGAATTTCCTTCGTCGCTGAAAAGCACAGCAACAGCGATGATCTCGTTGGTTATCGGGATTGCATTTTATTTAGGGACAGGTTTGATTAATCTGGTTCAGAGGGTTACAAGATGGCTACCAGACAACATAAACAATGGGAGGCTAGAGAACGTGTATTGGATGCTAGTTGTAATTGGAGTGGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACAGGCGATATACTCAACTACCTTAAGCGTGCTGAGAGTATTGCTGCACAAAATGTTGATCAGAATGTACACAGCTACTCTGACAAGTTTCTAGGCAAGAAAGAGCTCATCTCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

172

Amino Acids

19.17

Weight (kDa)

8.69

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 92	1.9e-11	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	370
AclWI	GGATC	2 cut(s)	371, 394
AcsI	RAATTY	3 cut(s)	39, 167, 351
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	79, 103
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	315
AjnI	CCWGG	2 cut(s)	55, 139
AluBI	AGCT	2 cut(s)	474, 505
AluI	AGCT	2 cut(s)	474, 505
Alw21I	GWGCWC	1 cut(s)	507
AlwI	GGATC	2 cut(s)	371, 394
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	39, 167, 351
AseI	ATTAAT	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	60, 270
BciT130I	CCWGG	2 cut(s)	57, 141
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	4 cut(s)	308, 329, 390, 491
BfmI	CTRYAG	1 cut(s)	367
BfrI	CTTAAG	1 cut(s)	422
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	57, 141
BmrFI	CCNGG	2 cut(s)	57, 141
BmsI	GCATC	1 cut(s)	315
BplI	GAGNNNNNCTC	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 103
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	57, 141
BseGI	GGATG	2 cut(s)	52, 330
BseLI	CCNNNNNNNGG	2 cut(s)	79, 103
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	507
BslFI	GGGAC	2 cut(s)	56, 253
BslI	CCNNNNNNNGG	2 cut(s)	79, 103
BsmFI	GGGAC	2 cut(s)	56, 253
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp1407I	TGTACA	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	204, 363, 386, 457
BspCNI	CTCAG	1 cut(s)	424
BspPI	GGATC	2 cut(s)	371, 394
BspQI	GCTCTTC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	422
BsrGI	TGTACA	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	204, 363, 386, 457
Bst2UI	CCWGG	2 cut(s)	57, 141
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	52, 330
BstKTI	GATC	4 cut(s)	207, 366, 389, 460
BstMBI	GATC	4 cut(s)	204, 363, 386, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	57, 141
BstSCI	CCNGG	2 cut(s)	55, 139
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	430
BstX2I	RGATCY	2 cut(s)	363, 386
BstYI	RGATCY	2 cut(s)	363, 386
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	52, 330
BtsIMutI	CAGTG	2 cut(s)	14, 365
Cac8I	GCNNGC	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	6 cut(s)	34, 91, 280, 307, 474, 505
CviKI_1	RGCY	6 cut(s)	34, 91, 280, 307, 474, 505
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	4 cut(s)	206, 365, 388, 459
DpnII	GATC	4 cut(s)	204, 363, 386, 457
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	55, 139
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 293, 410
FaqI	GGGAC	2 cut(s)	56, 253
FatI	CATG	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	39, 337
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	4 cut(s)	308, 329, 390, 491
GluI	GCNGC	1 cut(s)	444
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	371, 469
Hpy188I	TCNGA	3 cut(s)	264, 462, 481
Hpy188III	TCNNGA	2 cut(s)	220, 390
Hpy8I	GTNNAC	2 cut(s)	371, 469
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	183, 374
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	62, 227, 398, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	204, 363, 386, 457
LguI	GCTCTTC	1 cut(s)	98
LpnPI	CCDG	9 cut(s)	2, 42, 69, 126, 153, 228, 242, 297, 387
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	4 cut(s)	308, 329, 390, 491
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	4 cut(s)	206, 365, 388, 459
MboI	GATC	4 cut(s)	204, 363, 386, 457
MboII	GAAGA	1 cut(s)	85
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	2 cut(s)	363, 386
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	5 cut(s)	39, 101, 167, 336, 351
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	118, 258, 297
MseI	TTAA	3 cut(s)	36, 252, 423
MslI	CAYNNNNRTG	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	57, 141
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	57, 141
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	204, 363, 386, 457
NlaIII	CATG	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	55, 139
PspGI	CCWGG	2 cut(s)	55, 139
PsuI	RGATCY	2 cut(s)	363, 386
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	36, 252, 423
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	204, 363, 386, 457
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	57, 141
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	5 cut(s)	247, 318, 423, 476, 507
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	5 cut(s)	39, 101, 167, 336, 351
SspMI	CTAG	4 cut(s)	308, 329, 390, 491
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	55, 139
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	318
TasI	AATT	5 cut(s)	39, 101, 167, 336, 351
TatI	WGTACW	1 cut(s)	466
Tru1I	TTAA	3 cut(s)	36, 252, 423
Tru9I	TTAA	3 cut(s)	36, 252, 423
TscAI	CASTG	2 cut(s)	21, 365
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	21, 365
Vha464I	CTTAAG	1 cut(s)	422
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	3 cut(s)	39, 167, 351
XbaI	TCTAGA	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	4 cut(s)	308, 329, 390, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.