Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

54329901 .. 54331491

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG317100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCATCAAAAACTTCAACAGAGCCTGATTACTATTATGGCGCAGGAGCAATGACTGACAATCCACCAACTAAAAGTATCAGATTCCTGAACTGTGCAGCCTTGAAAAGTGAAGAAGACAAACAATTTGTAGGCTCGTATGGAAACAGATGGAGGCTATGCACTGTGAAAGAAGTAGAAGACCTCAAAACCCTAATTAAGATCATGCCACTGTGGTCTACTGGCATCTTCCTAAGCACACCAATAGGCATTTTAAGCAGCCTCACTATACTCCAAGCCCTAACCATGGATAGACACCTTGGTCCACACTTCAAAATCCCTGCTGCTTCATTCCTAGTGTTCGCCCTCTTAGCCACAGCCATCTCCATCTTTATAATTGACCGCTTCATACTCCTCAAGTACAAGAATCTCACTGGACGAACTTTAACACCGATCCAGCGAATAGGGATCGGTCACATCATCAACATTATTTGTCTAATTGGGGCTGCCCTAATCGAAAGAAGACGACTTGGAGTGGCAAGATCACATAGCCTTATGAACCAACCTGGTTCAGAGGTGCCCATGTCCGCCTTTTGGCTTGTGGCACCGTTATCTATTATGGGAATTTGTGAGGCATTTCATTTCCCTGGACAAGTTTCATTGTGCTATCAAGAATTTCCAAAATCATTGAGAAGTACATCCACTGCAATGATCTCATTATTACTTGGAATCGGGTATTATCTTAGCACTGCAGTCACTGATTTGGTAGACAAGACTACGAATTGGTTGCCAGATGATATAAATCAAGGGCGGTTGGATAATGTCTTTTGGATGTTGGTAGTGATTGGGGTGGTGAATTTTGGTTACTACATAACTTGTGCCAAGTTTTTTGTGTCCCAAAAACAAAATGTTGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

299

Amino Acids

33.26

Weight (kDa)

9.1

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	41 - 254	5.3e-32	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AasI	GACNNNNNNGTC	1 cut(s)	300
AccB1I	GGYRCC	2 cut(s)	556, 583
AccI	GTMKAC	2 cut(s)	218, 747
AciI	CCGC	3 cut(s)	382, 567, 790
AclWI	GGATC	2 cut(s)	427, 455
AcsI	RAATTY	3 cut(s)	603, 653, 835
AfaI	GTAC	2 cut(s)	401, 676
AfiI	CCNNNNNNNGG	2 cut(s)	286, 573
AgsI	TTSAA	3 cut(s)	18, 106, 313
AjnI	CCWGG	2 cut(s)	544, 625
AlwI	GGATC	2 cut(s)	427, 455
AlwNI	CAGNNNCTG	2 cut(s)	26, 737
ApeKI	GCWGC	4 cut(s)	98, 258, 323, 485
ApoI	RAATTY	3 cut(s)	603, 653, 835
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	561
BanI	GGYRCC	2 cut(s)	556, 583
BbsI	GAAGAC	3 cut(s)	123, 186, 508
BbvI	GCAGC	4 cut(s)	110, 270, 310, 472
BccI	CCATC	3 cut(s)	144, 368, 374
BcgI	CGANNNNNNTGC	2 cut(s)	748, 782
BciT130I	CCWGG	2 cut(s)	546, 627
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	729
BisI	GCNGC	4 cut(s)	99, 259, 324, 486
BlsI	GCNGC	4 cut(s)	100, 260, 325, 487
Bme1390I	CCNGG	2 cut(s)	546, 627
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	558, 585
BmrFI	CCNGG	2 cut(s)	546, 627
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	3 cut(s)	123, 186, 508
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	3 cut(s)	285, 298, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 573
Bse1I	ACTGG	2 cut(s)	226, 418
Bse3DI	GCAATG	2 cut(s)	57, 693
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	2 cut(s)	546, 627
BseDI	CCNNGG	3 cut(s)	285, 298, 625
BseGI	GGATG	2 cut(s)	677, 816
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	286, 573
BseMI	GCAATG	2 cut(s)	57, 693
BseNI	ACTGG	2 cut(s)	226, 418
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	4 cut(s)	110, 270, 310, 472
BsgI	GTGCAG	1 cut(s)	117
BshNI	GGYRCC	2 cut(s)	556, 583
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	2 cut(s)	286, 573
BsmFI	GGGAC	1 cut(s)	859
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	5 cut(s)	201, 432, 447, 521, 690
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	3 cut(s)	382, 567, 790
BspLI	GGNNCC	2 cut(s)	558, 585
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	2 cut(s)	427, 455
BspT107I	GGYRCC	2 cut(s)	556, 583
BsrDI	GCAATG	2 cut(s)	57, 693
BsrI	ACTGG	2 cut(s)	226, 418
BssECI	CCNNGG	3 cut(s)	285, 298, 625
BssMI	GATC	5 cut(s)	201, 432, 447, 521, 690
BssT1I	CCWWGG	2 cut(s)	285, 298
Bst2UI	CCWGG	2 cut(s)	546, 627
Bst4CI	ACNGT	4 cut(s)	95, 166, 213, 588
BstDEI	CTNAG	3 cut(s)	233, 349, 722
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	677, 816
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	5 cut(s)	204, 435, 450, 524, 693
BstMBI	GATC	5 cut(s)	201, 432, 447, 521, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 350
BstNI	CCWGG	2 cut(s)	546, 627
BstSCI	CCNGG	2 cut(s)	544, 625
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	110, 270, 310, 472
BstV2I	GAAGAC	3 cut(s)	123, 186, 508
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	677, 816
BtsI	GCAGTG	2 cut(s)	681, 726
BtsIMutI	CAGTG	6 cut(s)	162, 209, 411, 681, 726, 735
CaiI	CAGNNNCTG	2 cut(s)	26, 737
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	400, 675
CviAII	CATG	3 cut(s)	205, 286, 562
CviQI	GTAC	2 cut(s)	400, 675
DdeI	CTNAG	3 cut(s)	233, 349, 722
DpnI	GATC	5 cut(s)	203, 434, 449, 523, 692
DpnII	GATC	5 cut(s)	201, 432, 447, 521, 690
DrdI	GACNNNNNNGTC	1 cut(s)	300
DseDI	GACNNNNNNGTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	285, 298
Eco47I	GGWCC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	544, 625
EcoT14I	CCWWGG	2 cut(s)	285, 298
ErhI	CCWWGG	2 cut(s)	285, 298
FaeI	CATG	3 cut(s)	208, 289, 565
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	3 cut(s)	204, 285, 561
FblI	GTMKAC	2 cut(s)	218, 747
Fnu4HI	GCNGC	4 cut(s)	99, 259, 324, 486
FokI	GGATG	2 cut(s)	664, 823
Fsp4HI	GCNGC	4 cut(s)	99, 259, 324, 486
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	99, 259, 324, 486
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	208, 289, 565
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	84, 406, 708
HphI	GGTGA	1 cut(s)	844
Hpy166II	GTNNAC	3 cut(s)	219, 305, 748
Hpy188I	TCNGA	2 cut(s)	83, 553
Hpy188III	TCNNGA	2 cut(s)	88, 650
Hpy8I	GTNNAC	3 cut(s)	219, 305, 748
HpyCH4III	ACNGT	4 cut(s)	95, 166, 213, 588
HpyCH4V	TGCA	4 cut(s)	98, 162, 686, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 350
HpyF3I	CTNAG	3 cut(s)	233, 349, 722
Hsp92II	CATG	3 cut(s)	208, 289, 565
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	5 cut(s)	201, 432, 447, 521, 690
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	4 cut(s)	110, 270, 310, 472
LweI	GCATC	1 cut(s)	234
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	452, 733, 842
MalI	GATC	5 cut(s)	203, 434, 449, 523, 692
MboI	GATC	5 cut(s)	201, 432, 447, 521, 690
MboII	GAAGA	5 cut(s)	125, 128, 191, 220, 513
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	8 cut(s)	125, 195, 375, 477, 603, 653, 760, 835
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	7 cut(s)	147, 194, 272, 356, 404, 547, 604
MseI	TTAA	3 cut(s)	198, 254, 425
MslI	CAYNNNNRTG	1 cut(s)	686
MspR9I	CCNGG	2 cut(s)	546, 627
MvaI	CCWGG	2 cut(s)	546, 627
MwoI	GCNNNNNNNGC	2 cut(s)	255, 350
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	201, 432, 447, 521, 690
NlaIII	CATG	3 cut(s)	208, 289, 565
NlaIV	GGNNCC	2 cut(s)	558, 585
NmuCI	GTSAC	2 cut(s)	452, 733
PfeI	GAWTC	3 cut(s)	84, 406, 708
PkrI	GCNGC	4 cut(s)	100, 260, 325, 487
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	544, 625
PspGI	CCWGG	2 cut(s)	544, 625
PspN4I	GGNNCC	2 cut(s)	558, 585
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	733
PstNI	CAGNNNCTG	2 cut(s)	26, 737
RsaI	GTAC	2 cut(s)	401, 676
RsaNI	GTAC	2 cut(s)	400, 675
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	198, 254, 425
SatI	GCNGC	4 cut(s)	99, 259, 324, 486
Sau3AI	GATC	5 cut(s)	201, 432, 447, 521, 690
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	546, 627
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	4 cut(s)	186, 300, 547, 558
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	8 cut(s)	125, 195, 375, 477, 603, 653, 760, 835
SsiI	CCGC	3 cut(s)	382, 567, 790
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	544, 625
StyI	CCWWGG	2 cut(s)	285, 298
TaaI	ACNGT	4 cut(s)	95, 166, 213, 588
TaqI	TCGA	1 cut(s)	495
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	8 cut(s)	125, 195, 375, 477, 603, 653, 760, 835
TatI	WGTACW	2 cut(s)	399, 674
TfiI	GAWTC	3 cut(s)	84, 406, 708
Tru1I	TTAA	3 cut(s)	198, 254, 425
Tru9I	TTAA	3 cut(s)	198, 254, 425
TscAI	CASTG	6 cut(s)	169, 216, 418, 688, 733, 742
TseFI	GTSAC	2 cut(s)	452, 733
TseI	GCWGC	4 cut(s)	98, 258, 323, 485
Tsp45I	GTSAC	2 cut(s)	452, 733
TspDTI	ATGAA	5 cut(s)	318, 376, 551, 608, 627
TspRI	CASTG	6 cut(s)	169, 216, 418, 688, 733, 742
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	3 cut(s)	603, 653, 835
XmiI	GTMKAC	2 cut(s)	218, 747
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.