Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

69599514 .. 69609396

Gene Structure 9883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG402200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAGTTTCAGCACTGGTAGAGTCTAAAAGGCTTAAAATTTCCCAAGACCATCCTGGTGCAACTACTGTCCCCATGTTGGCATTGTGGCTCTTCCCACAATTGGTTTTGGTTGGCGTTGGAGAGGCATTTCATTTTCCAGGACAAGTTTCTTTGTATTACCAAGAATTTCCTTCGTCGCTGAAAAGCACAGCAACAGCGATGATCTCGTTGGTTATCGGGATTGCATTTTATTTAGGGACAGGTTTGATTAATTTGGTTCAGAGGGTTACAAGATGGCTACCGGACGACATAAACGATGGGAAGCTAGAGAATGTGTATTGGATGCTAGTTGTAATTGGAGTGTCAATGAATATGCCAACAAGGGCAAGCCCTGAGAGCACAAAGGTTCTACAAGCACAAGCTAACAACCAAAGGCCAACCAATGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

144

Amino Acids

15.79

Weight (kDa)

8.05

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 92	1.2e-11	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	425
AcsI	RAATTY	2 cut(s)	39, 167
AfiI	CCNNNNNNNGG	3 cut(s)	79, 103, 425
AjnI	CCWGG	2 cut(s)	55, 139
AluBI	AGCT	2 cut(s)	307, 404
AluI	AGCT	2 cut(s)	307, 404
Alw21I	GWGCWC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	416
ApoI	RAATTY	2 cut(s)	39, 167
AseI	ATTAAT	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	383
BccI	CCATC	3 cut(s)	60, 270, 293
BciT130I	CCWGG	2 cut(s)	57, 141
BfaI	CTAG	2 cut(s)	308, 329
Bme1390I	CCNGG	2 cut(s)	57, 141
BmrFI	CCNGG	2 cut(s)	57, 141
BmsI	GCATC	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 103, 425
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	57, 141
BseGI	GGATG	2 cut(s)	52, 330
BseLI	CCNNNNNNNGG	3 cut(s)	79, 103, 425
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	56, 253
BslI	CCNNNNNNNGG	3 cut(s)	79, 103, 425
BsmFI	GGGAC	2 cut(s)	56, 253
BsnI	GGCC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	367
BspQI	GCTCTTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	57, 141
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	52, 330
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 378
BstNI	CCWGG	2 cut(s)	57, 141
BstSCI	CCNGG	2 cut(s)	55, 139
BsuRI	GGCC	1 cut(s)	418
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	52, 330
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	370
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	7 cut(s)	34, 91, 280, 307, 372, 404, 418
CviKI_1	RGCY	7 cut(s)	34, 91, 280, 307, 372, 404, 418
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	55, 139
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 293, 356
FaqI	GGGAC	2 cut(s)	56, 253
FatI	CATG	1 cut(s)	75
FokI	GGATG	2 cut(s)	39, 337
FspBI	CTAG	2 cut(s)	308, 329
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	62, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 378
HpyF3I	CTNAG	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	204
LguI	GCTCTTC	1 cut(s)	98
LpnPI	CCDG	8 cut(s)	2, 42, 69, 126, 153, 228, 297, 387
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	308, 329
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	85
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	6 cut(s)	39, 101, 167, 253, 336, 430
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	118, 258
MseI	TTAA	2 cut(s)	36, 252
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	57, 141
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	57, 141
MwoI	GCNNNNNNNGC	2 cut(s)	11, 378
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PflMI	CCANNNNNTGG	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	139
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	55, 139
PspGI	CCWGG	2 cut(s)	55, 139
RseI	CAYNNNNRTG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	36, 252
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	57, 141
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	4 cut(s)	247, 309, 390, 406
SfaNI	GCATC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	6 cut(s)	39, 101, 167, 253, 336, 430
SspMI	CTAG	2 cut(s)	308, 329
StyD4I	CCNGG	2 cut(s)	55, 139
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	6 cut(s)	39, 101, 167, 253, 336, 430
Tru1I	TTAA	2 cut(s)	36, 252
Tru9I	TTAA	2 cut(s)	36, 252
TscAI	CASTG	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	122, 365
TspRI	CASTG	1 cut(s)	21
Van91I	CCANNNNNTGG	1 cut(s)	425
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	2 cut(s)	39, 167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XspI	CTAG	2 cut(s)	308, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.