Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

11257010 .. 11257706

Gene Structure 697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1122300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTGCTTGACACTTGCTGCTGGAGGGTGGCAAGCAAATCTGATTGTGTATCTGATTCAGGAGTTTAATGTGAAGAGCATTGATGCTACTCAGGTGTCAAATGTTGTCAATGGTTGCACTAGTTTGTTTCCTATCATTGGAGCAATTATTGCAGACTCTTTCTTTGGCTGTTTCCCTGTCTTCCTGATCTCGTCTTATATCTCTTTTCTGGTAATAGCCTCGCTCGCGACTGTTACAAGTTCTACTGCCGTTGTCTATATTGAGGACAGTGTCAGTTGGGGGTTGGGATTTGGCCTAACGGCTCTTGTTAATATGATTGGTCTGGTCATATTCTCATCTGGAATCCATTTCTATCATCGTGATAAGCCACAAGGTAGCCCATTTGTGAATATAGCTCGTGTTATTGTTGCTAGTATCCGGAAATGGAACGTTAAGCTCTCATCCAAAAGGGAGGATTACCAGTACCGCAATGATGGAGAGACCAAGACGACTCCTGCAGCACCTAAAAAGAGTTTCATGTACCAGAATTTCCACACGTTCTGCATCCTCACATTGATTTTACGTTGGTGTCTTCTTTATTGCACGCCTCTTGTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

200

Amino Acids

22.08

Weight (kDa)

8.75

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	79 - 150	2.6e-11	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	417
AciI	CCGC	1 cut(s)	466
AclI	AACGTT	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	526
AfaI	GTAC	2 cut(s)	464, 521
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	534
AhlI	ACTAGT	1 cut(s)	119
AluBI	AGCT	2 cut(s)	395, 436
AluI	AGCT	2 cut(s)	395, 436
Alw26I	GTCTC	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	17, 497
ApoI	RAATTY	1 cut(s)	526
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	172, 563
BbvI	GCAGC	2 cut(s)	4, 509
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	233, 315
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	473
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	2 cut(s)	120, 411
BfmI	CTRYAG	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	425
BisI	GCNGC	2 cut(s)	18, 498
BlsI	GCNGC	2 cut(s)	19, 499
BmsI	GCATC	2 cut(s)	73, 552
BpiI	GAAGAC	2 cut(s)	172, 563
BpmI	CTGGAG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	475
BseAI	TCCGGA	1 cut(s)	417
BseGI	GGATG	2 cut(s)	440, 543
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	4, 509
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	473
Bsp13I	TCCGGA	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	186
Bsp68I	TCGCGA	1 cut(s)	227
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	227
BspMAI	CTGCAG	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	460
BssMI	GATC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	232, 269
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	33, 225, 584
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	440, 543
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 224
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	4, 509
BstV2I	GAAGAC	2 cut(s)	172, 563
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	440, 543
BtsIMutI	CAGTG	1 cut(s)	274
BtuMI	TCGCGA	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	33, 225, 584
Csp6I	GTAC	2 cut(s)	463, 520
CviAII	CATG	1 cut(s)	517
CviJI	RGCY	8 cut(s)	168, 218, 294, 302, 367, 378, 395, 436
CviKI_1	RGCY	8 cut(s)	168, 218, 294, 302, 367, 378, 395, 436
CviQI	GTAC	2 cut(s)	463, 520
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	473
FaeI	CATG	1 cut(s)	520
FaiI	YATR	6 cut(s)	198, 258, 314, 329, 392, 518
FatI	CATG	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	18, 498
FokI	GGATG	2 cut(s)	427, 530
Fsp4HI	GCNGC	2 cut(s)	18, 498
FspBI	CTAG	2 cut(s)	120, 411
GluI	GCNGC	2 cut(s)	18, 498
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	418
Hin1II	CATG	1 cut(s)	520
HinfI	GANTC	4 cut(s)	55, 155, 342, 490
HpaII	CCGG	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	42, 54
Hpy188III	TCNNGA	6 cut(s)	59, 184, 226, 339, 359, 418
HpyCH4III	ACNGT	2 cut(s)	232, 269
HpyCH4IV	ACGT	3 cut(s)	429, 536, 562
HpyCH4V	TGCA	5 cut(s)	117, 152, 497, 543, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 224
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	3 cut(s)	429, 536, 562
Hsp92II	CATG	1 cut(s)	520
Kpn2I	TCCGGA	1 cut(s)	417
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	2 cut(s)	4, 509
LweI	GCATC	2 cut(s)	73, 552
MaeI	CTAG	2 cut(s)	120, 411
MaeII	ACGT	3 cut(s)	429, 536, 562
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	3 cut(s)	85, 172, 563
MluCI	AATT	2 cut(s)	144, 526
MlyI	GAGTC	2 cut(s)	149, 484
MnlI	CCTC	6 cut(s)	17, 229, 256, 445, 557, 597
MroI	TCCGGA	1 cut(s)	417
MseI	TTAA	3 cut(s)	66, 309, 432
MspI	CCGG	1 cut(s)	418
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	149, 224
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	520
NruI	TCGCGA	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	55, 342
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	19, 499
PleI	GAGTC	2 cut(s)	149, 484
PpsI	GAGTC	2 cut(s)	149, 484
Psp1406I	AACGTT	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	269
RruI	TCGCGA	1 cut(s)	227
RsaI	GTAC	2 cut(s)	464, 521
RsaNI	GTAC	2 cut(s)	463, 520
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	66, 309, 432
SatI	GCNGC	2 cut(s)	18, 498
Sau3AI	GATC	1 cut(s)	186
SchI	GAGTC	2 cut(s)	149, 484
SetI	ASST	8 cut(s)	96, 376, 397, 432, 438, 505, 539, 565
SfaNI	GCATC	2 cut(s)	73, 552
SfcI	CTRYAG	1 cut(s)	495
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	2 cut(s)	144, 526
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	120, 411
TaaI	ACNGT	2 cut(s)	232, 269
TaiI	ACGT	3 cut(s)	432, 539, 565
TasI	AATT	2 cut(s)	144, 526
TfiI	GAWTC	2 cut(s)	55, 342
Tru1I	TTAA	3 cut(s)	66, 309, 432
Tru9I	TTAA	3 cut(s)	66, 309, 432
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	2 cut(s)	17, 497
TspDTI	ATGAA	1 cut(s)	505
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	526
XspI	CTAG	2 cut(s)	120, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.