Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Forward (+)

7300317 .. 7301280

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAACTTGATGTTCTTAGTACCATTCCCTCTCCCTCACCATCGCTATGGTACAAAAAATAAAATAAAAAGATTCCTTAACCGTGCAGCACAGAAAATTGAAGGAGACGTGAAATCAGATGGCTCAATTGCGAAACCATGGAGCTTATGCACAACGCAACAGGTGGAAGATTTCAAGACCGTTCTAAGAATTTTTCCACTATGGTCTACAGCTTTATTCTTAGCTACCCCAATAGCAATCCAATCCAGCATGTCAGTCCTGCAGGCTCTAACCATGGACCGTCACATTGGCCCCCATTTTAAATTGCCTTCTAGTTCTGTTGTAGTCATTGTTCTATTCTCCACATCCATCTTTCTAACCCTAATTGATAGATTCTTATGCCCCATCTGGCAGAAGTTCACTGGTCAGTTACCGTCGCCCCTCCAGCGTGTAGGAGTAGGACACGTGTTAACCATTCTCAGCATGGCTGTTTCAGCAGTGATGGAGTCCAAAAGGCTCAAAATAGTGCAAGAACACCACCTCCAAGACCAGCCTGGTACTATTGTTCCAATGTCGATCTTTTGGCTTTTCCCACAGTTAGTTTTGGTAGGCATTGGAGAAGCATTTCATTTTCCAGGACAGGTTGCATTGTTTTATCAAGAATTTCCCATGTCACTGCGAAGCACATCGACGGCCTTGATCTCATTGATTATTGGGATTGCATATTATGTAAGCACAGGTGTGGTTAATATGGTCCAAAGGGTTACTGGATGGTTACCAAACAATCTAAACAATGGGAAGCTGGACAATGTTTATTGGATGCTAGCTGTGCTGGGGGTGATAAACTTCGGCTATTATTTGTTGTGTGCTAAGTTGTACAGGTATCAAAATGTAAAGGGTGCAGATGGTAGTCCTGACCCAGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

303

Amino Acids

33.83

Weight (kDa)

9.51

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	39 - 249	2.8e-36	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	189, 641
AcvI	CACGTG	1 cut(s)	445
AfaI	GTAC	4 cut(s)	21, 52, 538, 857
AflIII	ACRYGT	2 cut(s)	442, 444
AgsI	TTSAA	2 cut(s)	101, 175
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	532, 613
AleI	CACNNNNGTG	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
AluBI	AGCT	6 cut(s)	144, 212, 224, 781, 806, 906
AluI	AGCT	6 cut(s)	144, 212, 224, 781, 806, 906
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	289, 672
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	189, 641
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	3 cut(s)	277, 290, 733
AsuHPI	GGTGA	2 cut(s)	29, 829
AsuNHI	GCTAGC	1 cut(s)	802
AvaII	GGWCC	2 cut(s)	277, 733
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BbrPI	CACGTG	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	7 cut(s)	48, 113, 356, 392, 475, 744, 878
BceAI	ACGGC	1 cut(s)	687
BciT130I	CCWGG	2 cut(s)	534, 615
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	3 cut(s)	312, 803, 907
BfmI	CTRYAG	2 cut(s)	207, 260
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	534, 615
Bme18I	GGWCC	2 cut(s)	277, 733
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	277, 290, 733
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	534, 615
BmsI	GCATC	1 cut(s)	789
BmtI	GCTAGC	1 cut(s)	806
BpmI	CTGGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	137, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse1I	ACTGG	2 cut(s)	406, 751
BseBI	CCWGG	2 cut(s)	534, 615
BseDI	CCNNGG	2 cut(s)	137, 273
BseGI	GGATG	3 cut(s)	344, 755, 804
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	2 cut(s)	406, 751
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	811
BsgI	GTGCAG	2 cut(s)	105, 900
BshFI	GGCC	2 cut(s)	291, 674
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	291, 674
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	2 cut(s)	555, 678
Bsp19I	CCATGG	2 cut(s)	137, 273
BspANI	GGCC	2 cut(s)	291, 674
BspCNI	CTCAG	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	264
BspOI	GCTAGC	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	2 cut(s)	406, 751
BssECI	CCNNGG	2 cut(s)	137, 273
BssMI	GATC	2 cut(s)	555, 678
BssT1I	CCWWGG	2 cut(s)	137, 273
Bst2UI	CCWGG	2 cut(s)	534, 615
Bst4CI	ACNGT	5 cut(s)	83, 181, 281, 414, 576
BstAUI	TGTACA	1 cut(s)	855
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	264, 804
BstDEI	CTNAG	5 cut(s)	16, 185, 220, 458, 849
BstDSI	CCRYGG	2 cut(s)	137, 273
BstEII	GGTNACC	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	344, 755, 804
BstKTI	GATC	2 cut(s)	558, 681
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	555, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	424, 473, 808
BstNI	CCWGG	2 cut(s)	534, 615
BstNSI	RCATGY	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	2 cut(s)	532, 613
BstSFI	CTRYAG	2 cut(s)	207, 260
BstV1I	GCAGC	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	291, 674
BtgI	CCRYGG	2 cut(s)	137, 273
BtgZI	GCGATG	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	344, 755, 804
BtsI	GCAGTG	2 cut(s)	483, 653
BtsIMutI	CAGTG	3 cut(s)	399, 483, 653
Cac8I	GCNNGC	2 cut(s)	264, 804
Cfr13I	GGNCC	3 cut(s)	277, 290, 733
Csp6I	GTAC	4 cut(s)	20, 51, 537, 856
CviAII	CATG	5 cut(s)	138, 250, 274, 463, 649
CviQI	GTAC	4 cut(s)	20, 51, 537, 856
DdeI	CTNAG	5 cut(s)	16, 185, 220, 458, 849
DpnI	GATC	2 cut(s)	557, 680
DpnII	GATC	2 cut(s)	555, 678
DraI	TTTAAA	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	137, 273
Eco47I	GGWCC	2 cut(s)	277, 733
Eco72I	CACGTG	1 cut(s)	445
Eco91I	GGTNACC	1 cut(s)	753
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	2 cut(s)	532, 613
EcoT14I	CCWWGG	2 cut(s)	137, 273
ErhI	CCWWGG	2 cut(s)	137, 273
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	5 cut(s)	141, 253, 277, 466, 652
FatI	CATG	5 cut(s)	137, 249, 273, 462, 648
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	3 cut(s)	331, 762, 811
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	3 cut(s)	312, 803, 907
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	815
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	291, 674
Hin1II	CATG	5 cut(s)	141, 253, 277, 466, 652
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	3 cut(s)	72, 372, 485
HpaI	GTTAAC	1 cut(s)	450
HphI	GGTGA	2 cut(s)	29, 829
Hpy166II	GTNNAC	3 cut(s)	207, 399, 450
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	175, 638, 893
Hpy8I	GTNNAC	3 cut(s)	207, 399, 450
Hpy99I	CGWCG	2 cut(s)	418, 673
HpyAV	CCTTC	2 cut(s)	95, 318
HpyCH4III	ACNGT	5 cut(s)	83, 181, 281, 414, 576
HpyCH4IV	ACGT	2 cut(s)	108, 444
HpyCH4V	TGCA	7 cut(s)	86, 150, 262, 508, 626, 701, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	424, 473, 808
HpyF3I	CTNAG	5 cut(s)	16, 185, 220, 458, 849
HpySE526I	ACGT	2 cut(s)	108, 444
Hsp92II	CATG	5 cut(s)	141, 253, 277, 466, 652
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	555, 678
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	3 cut(s)	312, 803, 907
MaeII	ACGT	2 cut(s)	108, 444
MaeIII	GTNAC	5 cut(s)	281, 408, 651, 742, 753
MalI	GATC	2 cut(s)	557, 680
MboI	GATC	2 cut(s)	555, 678
MboII	GAAGA	1 cut(s)	179
MfeI	CAATTG	1 cut(s)	126
MluCI	AATT	6 cut(s)	96, 126, 189, 302, 363, 641
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	4 cut(s)	39, 45, 431, 530
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	4 cut(s)	78, 300, 449, 726
MslI	CAYNNNNRTG	2 cut(s)	45, 719
MspR9I	CCNGG	2 cut(s)	534, 615
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	2 cut(s)	534, 615
MwoI	GCNNNNNNNGC	3 cut(s)	424, 473, 808
NcoI	CCATGG	2 cut(s)	137, 273
NdeII	GATC	2 cut(s)	555, 678
NheI	GCTAGC	1 cut(s)	802
NlaIII	CATG	5 cut(s)	141, 253, 277, 466, 652
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	281, 651
NspI	RCATGY	1 cut(s)	253
OliI	CACNNNNGTG	1 cut(s)	719
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	72, 372
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	493
PmaCI	CACGTG	1 cut(s)	445
PmlI	CACGTG	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	532, 613
PspCI	CACGTG	1 cut(s)	445
PspEI	GGTNACC	1 cut(s)	753
PspFI	CCCAGC	1 cut(s)	811
PspGI	CCWGG	2 cut(s)	532, 613
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	3 cut(s)	277, 290, 733
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PstI	CTGCAG	1 cut(s)	264
RsaI	GTAC	4 cut(s)	21, 52, 538, 857
RsaNI	GTAC	4 cut(s)	20, 51, 537, 856
RseI	CAYNNNNRTG	2 cut(s)	45, 719
SaqAI	TTAA	4 cut(s)	78, 300, 449, 726
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	555, 678
Sau96I	GGNCC	3 cut(s)	277, 290, 733
SbfI	CCTGCAGG	1 cut(s)	264
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	534, 615
SdaI	CCTGCAGG	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	789
SfcI	CTRYAG	2 cut(s)	207, 260
SinI	GGWCC	2 cut(s)	277, 733
SmiMI	CAYNNNNRTG	2 cut(s)	45, 719
Sse8387I	CCTGCAGG	1 cut(s)	264
Sse9I	AATT	6 cut(s)	96, 126, 189, 302, 363, 641
SspMI	CTAG	3 cut(s)	312, 803, 907
StyD4I	CCNGG	2 cut(s)	532, 613
StyI	CCWWGG	2 cut(s)	137, 273
TaaI	ACNGT	5 cut(s)	83, 181, 281, 414, 576
TaiI	ACGT	2 cut(s)	111, 447
TaqI	TCGA	2 cut(s)	554, 668
TasI	AATT	6 cut(s)	96, 126, 189, 302, 363, 641
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	2 cut(s)	72, 372
Tru1I	TTAA	4 cut(s)	78, 300, 449, 726
Tru9I	TTAA	4 cut(s)	78, 300, 449, 726
TscAI	CASTG	3 cut(s)	406, 483, 660
TseFI	GTSAC	2 cut(s)	281, 651
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	281, 651
TspDTI	ATGAA	2 cut(s)	17, 596
TspRI	CASTG	3 cut(s)	406, 483, 660
VpaK11BI	GGWCC	2 cut(s)	277, 733
XapI	RAATTY	2 cut(s)	189, 641
XceI	RCATGY	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	3 cut(s)	460, 530, 743
XmiI	GTMKAC	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	3 cut(s)	312, 803, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.