Rroxscaffold_1G00019240

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
23479676 .. 23481772
2097 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00019240.1

Sequence Viewer

Length: 348 bp
ATGGATGCATCACTCTCTGTAAACACAGGAGCAGAAATGTCGGGTTCTGGTGGTAGACGAGGTGGTTGGATCATCTCTTTAATTGTCATAGGAACTGTAATGTGCTTGATGCTTGCCGCTGGAGGATGGCAAGCAAATTTGATTGCATATCTGATTCGGGAATATAACGTGAAGAGCTGCTGCTCGGATAGTCAGATTTCAAATGTGATCAATGGTTGCACTAATTTATTTCCCGTCATTGGATCAATTATTGCACTCTTTCTTGGGCTGTTTCCCTGTCATCTTCATCTCTTCTGGTATCTCTTTGCTGCAGGGAATGGTCTTATTCACTTTGACTGCAACTGTTGA

Protein Analysis

115

Amino Acids

12.32

Weight (kDa)

6.22

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 55
AciI CCGC 1 cut(s) 117
AclWI GGATC 2 cut(s) 77, 250
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 201
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
AlwI GGATC 2 cut(s) 77, 250
ApeKI GCWGC 3 cut(s) 177, 180, 308
ApoI RAATTY 1 cut(s) 136
BbvI GCAGC 3 cut(s) 164, 167, 295
BccI CCATC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BclI TGATCA 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 4 cut(s) 117, 178, 181, 309
BlsI GCNGC 4 cut(s) 118, 179, 182, 310
BmsI GCATC 2 cut(s) 17, 99
BpmI CTGGAG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 239
BseGI GGATG 2 cut(s) 10, 131
BseLI CCNNNNNNNGG 1 cut(s) 239
BseXI GCAGC 3 cut(s) 164, 167, 295
BslI CCNNNNNNNGG 1 cut(s) 239
Bsp143I GATC 3 cut(s) 69, 207, 242
BspACI CCGC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 2 cut(s) 77, 250
BspQI GCTCTTC 1 cut(s) 167
BssMI GATC 3 cut(s) 69, 207, 242
Bst4CI ACNGT 2 cut(s) 97, 344
Bst6I CTCTTC 2 cut(s) 167, 296
BstC8I GCNNGC 2 cut(s) 114, 132
BstF5I GGATG 2 cut(s) 10, 131
BstKTI GATC 3 cut(s) 72, 210, 245
BstMBI GATC 3 cut(s) 69, 207, 242
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 164, 167, 295
BtsCI GGATG 2 cut(s) 10, 131
Cac8I GCNNGC 2 cut(s) 114, 132
CviJI RGCY 2 cut(s) 177, 268
CviKI_1 RGCY 2 cut(s) 177, 268
DpnI GATC 3 cut(s) 71, 209, 244
DpnII GATC 3 cut(s) 69, 207, 242
Eam1104I CTCTTC 2 cut(s) 167, 296
EarI CTCTTC 2 cut(s) 167, 296
EcoT22I ATGCAT 1 cut(s) 10
FaiI YATR 3 cut(s) 89, 148, 165
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 117, 178, 181, 309
FokI GGATG 2 cut(s) 17, 138
Fsp4HI GCNGC 4 cut(s) 117, 178, 181, 309
GluI GCNGC 4 cut(s) 117, 178, 181, 309
GsuI CTGGAG 1 cut(s) 141
HinfI GANTC 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 22, 56
Hpy188I TCNGA 3 cut(s) 153, 187, 195
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 22, 56
HpyCH4III ACNGT 2 cut(s) 97, 344
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 8, 146, 219, 254, 311, 339
HpySE526I ACGT 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 69, 207, 242
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 6 cut(s) 12, 33, 105, 280, 289, 297
Lsp1109I GCAGC 3 cut(s) 164, 167, 295
LweI GCATC 2 cut(s) 17, 99
MaeII ACGT 1 cut(s) 168
MalI GATC 3 cut(s) 71, 209, 244
MboI GATC 3 cut(s) 69, 207, 242
MboII GAAGA 3 cut(s) 184, 275, 283
MluCI AATT 4 cut(s) 81, 136, 223, 246
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 2 cut(s) 53, 116
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 119
NdeII GATC 3 cut(s) 69, 207, 242
NsiI ATGCAT 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 4 cut(s) 118, 179, 182, 310
PstI CTGCAG 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 4 cut(s) 117, 178, 181, 309
Sau3AI GATC 3 cut(s) 69, 207, 242
SetI ASST 3 cut(s) 64, 171, 179
SfaNI GCATC 2 cut(s) 17, 99
SfcI CTRYAG 1 cut(s) 309
Sse9I AATT 4 cut(s) 81, 136, 223, 246
SsiI CCGC 1 cut(s) 117
TaaI ACNGT 2 cut(s) 97, 344
TaiI ACGT 1 cut(s) 171
TasI AATT 4 cut(s) 81, 136, 223, 246
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseI GCWGC 3 cut(s) 177, 180, 308
TspDTI ATGAA 1 cut(s) 275
XapI RAATTY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.