Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

55650832 .. 55669028

Gene Structure 18197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG322800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTATCTACTGTGCCTAGTGTACTTGGTGATGATAGCAAACCTGTCGCCACAGAAAGCAAGGCTCAGCAAGCTACACAAACATCACATGTTCTCCAGGCCCAACTCTTGCAAAGAATGCCTAGTGATGAAGCTACAACTGTGTTGGGTCTCTCAGTAGCGGCAGGCGGGTGGGCATCGAATTTGATAGTGTTTCTGATAACAAAATTCAATGTGAAGACCATAACGGCTACACAGATCAATAACATCATCCTTGGTACCAACAATCTCTTCCCCATCGCCGGAGCCTTCATCGCTGATTCCTTTTTCACCTCCTTCTCCATCGTCGGCACCTTTTCCTTCATTTCTTTATTGTTGATCTCGAGTCTTGAGGACTACATGGAATTTTTGGGAATGGTCTTTAATAAAGCTTGGGATTCGGGTAGAAGTTCGAGTATTTGTAACAGGCCAACCCTTTTTAGTGTTAATCTTAAACTCAAAGCTTCTGCAGAACATTGGTTTTCGAAAATAAAGCTGAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008509 GO:0009987 GO:0015075 GO:0015103 GO:0015108 GO:0015318 GO:0015698 GO:0022857 GO:0034220 GO:0042221 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0098656 GO:0098660 GO:0098661 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

174

Amino Acids

18.82

Weight (kDa)

7.88

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	2 cut(s)	257, 329
AciI	CCGC	2 cut(s)	161, 168
AcsI	RAATTY	3 cut(s)	181, 206, 383
AfaI	GTAC	2 cut(s)	24, 259
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	74, 134, 410, 482, 514
AluI	AGCT	5 cut(s)	74, 134, 410, 482, 514
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	2 cut(s)	99, 446
ApoI	RAATTY	3 cut(s)	181, 206, 383
Asp718I	GGTACC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	41, 301
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	361
BanI	GGYRCC	2 cut(s)	257, 329
BbsI	GAAGAC	1 cut(s)	224
BccI	CCATC	2 cut(s)	284, 329
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	18, 123
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	259, 286, 331
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	80, 168
BshFI	GGCC	2 cut(s)	101, 448
BshNI	GGYRCC	2 cut(s)	257, 329
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	101, 448
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	237, 357
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	161, 168
BspANI	GGCC	2 cut(s)	101, 448
BspCNI	CTCAG	2 cut(s)	79, 167
BspLI	GGNNCC	3 cut(s)	259, 286, 331
BspMAI	CTGCAG	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	2 cut(s)	257, 329
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	237, 357
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	13, 142
Bst6I	CTCTTC	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	72, 166
BstDEI	CTNAG	2 cut(s)	66, 154
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	240, 360
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	237, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 118, 293
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	486
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	101, 448
BtgZI	GCGATG	2 cut(s)	262, 277
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	72, 166
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	23, 258
CviAII	CATG	2 cut(s)	89, 379
CviQI	GTAC	2 cut(s)	23, 258
DdeI	CTNAG	2 cut(s)	66, 154
DpnI	GATC	2 cut(s)	239, 359
DpnII	GATC	2 cut(s)	237, 357
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	92, 382
FaiI	YATR	3 cut(s)	90, 224, 380
FatI	CATG	2 cut(s)	88, 378
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	18, 123
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	101, 448
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	2 cut(s)	92, 382
HindIII	AAGCTT	2 cut(s)	408, 480
HinfI	GANTC	3 cut(s)	299, 364, 416
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	41, 301
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	361, 368
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	3 cut(s)	298, 325, 349
HpyCH4III	ACNGT	2 cut(s)	13, 142
HpyCH4V	TGCA	2 cut(s)	112, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 118, 293
HpyF3I	CTNAG	2 cut(s)	66, 154
Hsp92II	CATG	2 cut(s)	92, 382
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	237, 357
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	6 cut(s)	57, 83, 110, 150, 295, 430
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	18, 123
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	2 cut(s)	239, 359
MboI	GATC	2 cut(s)	237, 357
MboII	GAAGA	2 cut(s)	229, 262
MluCI	AATT	3 cut(s)	181, 206, 383
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	2 cut(s)	322, 364
MseI	TTAA	3 cut(s)	402, 465, 471
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	71, 118, 293
NdeII	GATC	2 cut(s)	237, 357
NlaIII	CATG	2 cut(s)	92, 382
NlaIV	GGNNCC	3 cut(s)	259, 286, 331
NspI	RCATGY	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	361
PciI	ACATGT	1 cut(s)	88
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	299, 416
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	259, 286, 331
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	2 cut(s)	24, 259
RsaNI	GTAC	2 cut(s)	23, 258
SaqAI	TTAA	3 cut(s)	402, 465, 471
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	237, 357
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	8 cut(s)	46, 76, 136, 314, 335, 412, 484, 516
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	486
Sfr274I	CTCGAG	1 cut(s)	361
SfuI	TTCGAA	1 cut(s)	503
SlaI	CTCGAG	1 cut(s)	361
SmlI	CTYRAG	2 cut(s)	361, 368
SmoI	CTYRAG	2 cut(s)	361, 368
Sse9I	AATT	3 cut(s)	181, 206, 383
SsiI	CCGC	2 cut(s)	161, 168
SspMI	CTAG	2 cut(s)	18, 123
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	13, 142
TaqI	TCGA	4 cut(s)	179, 362, 431, 503
TasI	AATT	3 cut(s)	181, 206, 383
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	299, 416
Tru1I	TTAA	3 cut(s)	402, 465, 471
Tru9I	TTAA	3 cut(s)	402, 465, 471
TspDTI	ATGAA	3 cut(s)	144, 280, 331
XapI	RAATTY	3 cut(s)	181, 206, 383
XceI	RCATGY	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	361
XspI	CTAG	2 cut(s)	18, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.