Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

29280137 .. 29280643

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGGCAGAAGTTAACCGGCCATTTTCCAACACCCCTCCAACGTATCGGATTAGGGCATGTGCTAAAGGTGTTGGCCATGGCGGTTTCAGCTCTGGTGGAGTCTAAAAGGCTCAAAATTTCCCAAGACCATCCTGGTGCAACTACTGTCCCTATGTTGGCAATGTGGCTCTTCCCACAATTGGCTTTGGCAGGCATTGGAGAGGCATTCCATTTTCCAGGACAAGTCACGTTGTATTACCAAGAATTTCCTTCGTCGCTGAAAAGCACAGCAACAGTGATGATCTCGTTGGTCATTGGGATTTCATTTTATTTAGGAACAGGTTTGATTAAAATGGTTCAGAGGGTTACAAGATGGCTACCAGACAACATAAACGATGGGAAGCTAGAGAATGTGTACTGGATGCTAGTTATAATTGGAGTGGTAAACTTTGGTTATTATTTAGTGTGTGCCAGGTTGTACAGGTATCAAAATGTGAAGGATACAAATGATAGTTCGGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

169

Amino Acids

18.81

Weight (kDa)

9.24

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	4 - 118	1.3e-17	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AciI	CCGC	1 cut(s)	83
AcoI	YGGCCR	2 cut(s)	19, 75
AcsI	RAATTY	2 cut(s)	117, 245
AfaI	GTAC	2 cut(s)	398, 461
AfiI	CCNNNNNNNGG	2 cut(s)	157, 181
AjnI	CCWGG	3 cut(s)	133, 217, 452
AluBI	AGCT	2 cut(s)	92, 385
AluI	AGCT	2 cut(s)	92, 385
AoxI	GGCC	2 cut(s)	19, 75
ApoI	RAATTY	2 cut(s)	117, 245
BalI	TGGCCA	1 cut(s)	77
BccI	CCATC	4 cut(s)	138, 348, 371, 494
BciT130I	CCWGG	3 cut(s)	135, 219, 454
BciVI	GTATCC	1 cut(s)	475
BfaI	CTAG	2 cut(s)	386, 407
BfuI	GTATCC	1 cut(s)	475
Bme1390I	CCNGG	3 cut(s)	135, 219, 454
BmrFI	CCNGG	3 cut(s)	135, 219, 454
BmsI	GCATC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 181
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	3 cut(s)	135, 219, 454
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	3 cut(s)	130, 408, 505
BseLI	CCNNNNNNNGG	2 cut(s)	157, 181
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	21, 77
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	157, 181
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	21, 77
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	21, 77
BspQI	GCTCTTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	3 cut(s)	135, 219, 454
Bst4CI	ACNGT	2 cut(s)	148, 277
Bst6I	CTCTTC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	130, 408, 505
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	3 cut(s)	135, 219, 454
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	3 cut(s)	133, 217, 452
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	21, 77
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	130, 408, 505
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	397, 460
CviAII	CATG	2 cut(s)	59, 79
CviJI	RGCY	8 cut(s)	21, 77, 92, 112, 169, 185, 358, 385
CviKI_1	RGCY	8 cut(s)	21, 77, 92, 112, 169, 185, 358, 385
CviQI	GTAC	2 cut(s)	397, 460
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	2 cut(s)	19, 75
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	133, 217, 452
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	62, 82
FaiI	YATR	5 cut(s)	60, 80, 155, 371, 413
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	58, 78
FokI	GGATG	2 cut(s)	117, 415
FspBI	CTAG	2 cut(s)	386, 407
HaeIII	GGCC	2 cut(s)	21, 77
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	62, 82
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	101
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	3 cut(s)	15, 397, 427
Hpy188I	TCNGA	3 cut(s)	50, 342, 499
Hpy8I	GTNNAC	3 cut(s)	15, 397, 427
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	261, 472
HpyCH4III	ACNGT	2 cut(s)	148, 277
HpyCH4IV	ACGT	2 cut(s)	43, 230
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpySE526I	ACGT	2 cut(s)	43, 230
Hsp92II	CATG	2 cut(s)	62, 82
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	282
LguI	GCTCTTC	1 cut(s)	176
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	386, 407
MaeII	ACGT	2 cut(s)	43, 230
MaeIII	GTNAC	2 cut(s)	226, 346
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	163
MfeI	CAATTG	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	4 cut(s)	117, 179, 245, 414
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	53, 64
MnlI	CCTC	3 cut(s)	47, 196, 336
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	2 cut(s)	14, 330
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	3 cut(s)	135, 219, 454
MunI	CAATTG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	3 cut(s)	135, 219, 454
MwoI	GCNNNNNNNGC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	62, 82
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	176
PctI	GAATGC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	217
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	133, 217, 452
PspGI	CCWGG	3 cut(s)	133, 217, 452
RsaI	GTAC	2 cut(s)	398, 461
RsaNI	GTAC	2 cut(s)	397, 460
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	14, 330
Sau3AI	GATC	1 cut(s)	282
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	3 cut(s)	135, 219, 454
SetI	ASST	8 cut(s)	46, 72, 94, 233, 325, 387, 458, 467
SfaNI	GCATC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	4 cut(s)	117, 179, 245, 414
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	386, 407
StyD4I	CCNGG	3 cut(s)	133, 217, 452
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	148, 277
TaiI	ACGT	2 cut(s)	46, 233
TasI	AATT	4 cut(s)	117, 179, 245, 414
TatI	WGTACW	2 cut(s)	396, 459
Tru1I	TTAA	2 cut(s)	14, 330
Tru9I	TTAA	2 cut(s)	14, 330
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	2 cut(s)	117, 245
XceI	RCATGY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	386, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.